Wall clock time and date at job start Tue Mar 31 2020 13:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48494 * 109.47213 * 239.99906 * 3 2 1 5 5 H 1.48505 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47052 * 119.99434 * 3 2 1 7 7 C 1.37879 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47278 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47091 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00257 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99775 * 180.02562 * 11 10 9 14 14 C 1.47746 * 125.82447 * 4.92223 * 13 11 10 15 15 C 1.54916 * 104.84001 * 204.24987 * 14 13 11 16 16 C 1.55156 * 101.58195 * 322.90564 * 15 14 13 17 17 C 1.47027 * 125.64908 * 184.92467 * 13 11 10 18 18 H 1.08995 * 109.88051 * 59.31832 * 17 13 11 19 19 C 1.53008 * 109.87965 * 298.31094 * 17 13 11 20 20 C 1.52998 * 109.46907 * 176.50710 * 19 17 13 21 21 H 1.08999 * 109.47505 * 55.89813 * 20 19 17 22 22 O 1.42903 * 109.47122 * 295.89683 * 20 19 17 23 23 C 1.50705 * 109.47029 * 175.89885 * 20 19 17 24 24 C 1.33386 * 125.20232 * 264.99827 * 23 20 19 25 25 C 1.38417 * 114.91827 * 179.75405 * 24 23 20 26 26 C 1.33385 * 114.92482 * 0.24777 * 25 24 23 27 27 S 1.75879 * 109.59195 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00137 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46374 * 60.00199 * 9 7 2 30 30 H 1.08993 * 109.47162 * 300.00707 * 9 7 2 31 31 H 1.08999 * 109.46873 * 60.00108 * 10 9 7 32 32 H 1.09005 * 109.46997 * 300.00192 * 10 9 7 33 33 H 1.08998 * 110.43738 * 85.37363 * 14 13 11 34 34 H 1.09001 * 110.29340 * 323.05412 * 14 13 11 35 35 H 1.09005 * 110.99975 * 204.82792 * 15 14 13 36 36 H 1.08996 * 111.03349 * 80.99695 * 15 14 13 37 37 H 1.08997 * 110.71813 * 277.13717 * 16 15 14 38 38 H 1.08995 * 110.86948 * 153.94207 * 16 15 14 39 39 H 1.09003 * 109.46859 * 56.50541 * 19 17 13 40 40 H 1.08998 * 109.47125 * 296.50719 * 19 17 13 41 41 H 0.96703 * 114.00076 * 300.00219 * 22 20 19 42 42 H 1.07998 * 122.53481 * 0.02755 * 24 23 20 43 43 H 1.08010 * 122.53807 * 180.27118 * 25 24 23 44 44 H 1.08008 * 125.20419 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0033 12 8 0.2789 -4.9672 0.0033 13 7 2.1656 -6.1343 0.0047 14 6 3.6315 -6.2864 0.1087 15 6 3.9354 -7.6582 -0.5437 16 6 2.7149 -8.4988 -0.0843 17 6 1.5633 -7.4717 -0.0972 18 1 1.0021 -7.5555 -1.0278 19 6 0.6346 -7.7162 1.0940 20 6 -0.0533 -9.0734 0.9341 21 1 0.7009 -9.8520 0.8202 22 8 -0.8915 -9.0492 -0.2230 23 6 -0.8900 -9.3594 2.1545 24 6 -0.4935 -10.0745 3.2084 25 6 -1.4344 -10.1994 4.2158 26 6 -2.5969 -9.5901 3.9780 27 16 -2.5402 -8.8047 2.4053 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6246 -2.5563 0.8918 31 1 2.8718 -3.6036 0.8927 32 1 2.8719 -3.6052 -0.8873 33 1 3.9410 -6.2865 1.1538 34 1 4.1341 -5.4874 -0.4365 35 1 4.8653 -8.0766 -0.1584 36 1 3.9668 -7.5764 -1.6301 37 1 2.8721 -8.8894 0.9211 38 1 2.5162 -9.3099 -0.7848 39 1 -0.1188 -6.9295 1.1349 40 1 1.2165 -7.7102 2.0156 41 1 -1.5875 -8.3786 -0.1906 42 1 0.4889 -10.5184 3.2726 43 1 -1.2417 -10.7483 5.1259 44 1 -3.4435 -9.5805 4.6486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291937057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:43 Heat of formation + Delta-G solvation = -64.930744 kcal Electronic energy + Delta-G solvation = -24962.312612 eV Core-core repulsion = 21391.729530 eV Total energy + Delta-G solvation = -3570.583082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09003 -38.57226 -37.34683 -36.68535 -33.48628 -32.43564 -31.50882 -30.71303 -29.95920 -26.85741 -25.82440 -24.53377 -23.14344 -22.30559 -21.54691 -20.31345 -19.66552 -18.58213 -17.90726 -16.98534 -16.63340 -16.00414 -15.77171 -15.42321 -15.07224 -14.80811 -14.45223 -14.25600 -13.90031 -13.55243 -13.38797 -13.11993 -12.93086 -12.89232 -12.38588 -12.26966 -12.17424 -12.07661 -11.86956 -11.49187 -11.34614 -11.08523 -10.94815 -10.91759 -10.85312 -10.71937 -10.60329 -10.46360 -9.93644 -9.62843 -9.15996 -9.00790 -8.86190 -8.65199 -8.36326 -8.28911 -5.95078 -3.99497 0.77137 1.40464 1.80026 2.51016 3.23471 3.27946 3.34808 3.39573 3.41489 4.20546 4.33835 4.44129 4.48693 4.50357 4.79824 4.83882 4.94846 5.06143 5.14568 5.25547 5.29501 5.32544 5.39681 5.41451 5.52806 5.62253 5.63433 5.73707 5.75873 5.84458 5.98769 6.04449 6.10382 6.20529 6.23876 6.26564 6.28305 6.64489 6.92020 7.34511 7.74956 7.87470 7.89305 8.08219 8.39632 8.77046 9.08683 9.63824 11.15829 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002983 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.482345 B = 9385.612431 C =10783.589322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.125 4.125 11 C 0.527 3.473 12 O -0.531 6.531 13 N -0.628 5.628 14 C 0.101 3.899 15 C -0.133 4.133 16 C -0.130 4.130 17 C 0.142 3.858 18 H 0.080 0.920 19 C -0.160 4.160 20 C 0.183 3.817 21 H 0.115 0.885 22 O -0.551 6.551 23 C -0.206 4.206 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.217 4.217 27 S 0.117 5.883 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.378 0.622 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -24.251 4.908 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.165 4.165 11 C 0.318 3.682 12 O -0.406 6.406 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.171 4.171 16 C -0.168 4.168 17 C 0.038 3.962 18 H 0.098 0.902 19 C -0.199 4.199 20 C 0.121 3.879 21 H 0.133 0.867 22 O -0.357 6.357 23 C -0.324 4.324 24 C -0.167 4.167 25 C -0.166 4.166 26 C -0.352 4.352 27 S 0.381 5.619 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.226 0.774 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.645 -23.637 3.886 24.011 hybrid contribution 1.131 0.530 1.303 1.805 sum 2.776 -23.108 5.189 23.845 Atomic orbital electron populations 1.69986 1.06041 1.26676 1.50107 1.25019 0.94825 0.99187 0.95309 0.86656 0.79556 0.83204 0.78535 1.20254 1.21277 1.20258 1.21180 0.92864 0.91030 1.51503 0.92710 1.18892 0.93152 0.89329 0.98560 1.21854 1.00663 0.91713 1.02240 1.21292 0.88146 0.84416 0.74344 1.90641 1.14228 1.86947 1.48813 1.48888 1.07137 1.05242 1.75215 1.22319 0.81460 0.97878 1.00563 1.22768 0.98126 0.94933 1.01263 1.22747 0.94419 0.97494 1.02145 1.21389 0.93808 0.82658 0.98329 0.90226 1.22727 1.00800 0.97199 0.99132 1.20357 0.89759 0.97696 0.80080 0.86715 1.86569 1.47512 1.61079 1.40524 1.25540 0.99139 1.05521 1.02236 1.20033 1.01325 1.01807 0.93582 1.20153 0.93129 1.02625 1.00725 1.25658 1.02940 1.05885 1.00745 1.84401 1.10290 1.52773 1.14396 0.92903 0.95836 0.95889 0.90483 0.90364 0.91627 0.90203 0.90037 0.90549 0.90730 0.90105 0.89207 0.90711 0.77401 0.84315 0.84308 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.12 -2.60 4.59 -27.88 -0.13 -2.73 16 11 C 0.53 10.44 7.67 -10.99 -0.08 10.36 16 12 O -0.53 -12.46 14.79 5.56 0.08 -12.38 16 13 N -0.63 -9.38 3.07 -162.76 -0.50 -9.88 16 14 C 0.10 1.12 6.76 -2.35 -0.02 1.10 16 15 C -0.13 -1.11 7.09 -24.58 -0.17 -1.28 16 16 C -0.13 -1.14 5.46 -24.90 -0.14 -1.28 16 17 C 0.14 1.80 2.87 -66.95 -0.19 1.60 16 18 H 0.08 1.14 7.70 -51.93 -0.40 0.74 16 19 C -0.16 -2.01 4.33 -26.73 -0.12 -2.12 16 20 C 0.18 1.96 3.30 -27.88 -0.09 1.87 16 21 H 0.12 1.04 7.29 -51.93 -0.38 0.66 16 22 O -0.55 -6.61 12.68 -35.23 -0.45 -7.06 16 23 C -0.21 -2.25 5.52 -36.00 -0.20 -2.44 16 24 C -0.14 -1.33 10.05 -41.21 -0.41 -1.74 16 25 C -0.14 -1.24 10.18 -41.21 -0.42 -1.66 16 26 C -0.22 -2.06 11.23 29.04 0.33 -1.73 16 27 S 0.12 1.28 22.53 -107.50 -2.42 -1.14 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.51 7.97 -51.93 -0.41 1.09 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.87 7.49 -51.93 -0.39 0.48 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.45 6.60 -51.93 -0.34 1.10 16 40 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.38 4.24 8.39 45.56 0.38 4.62 16 42 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -34.54 373.50 -10.25 -44.79 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.13 Total: 3.05 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.17 Total: -12.93 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.24 Total: -36.71 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.36 Total: -19.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.42 Total: -1.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.54 -10.25 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291937057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds