Wall clock time and date at job start Tue Mar 31 2020 13:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48495 * 109.46940 * 239.99843 * 3 2 1 5 5 H 1.48496 * 109.46753 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47017 * 119.99567 * 3 2 1 7 7 C 1.37878 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47093 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99764 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00015 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99771 * 0.02562 * 13 11 10 15 15 C 1.50700 * 109.46920 * 270.00043 * 14 13 11 16 16 C 1.33385 * 125.20501 * 90.00457 * 15 14 13 17 17 C 1.38422 * 114.92261 * 179.97438 * 16 15 14 18 18 C 1.33389 * 114.92059 * 359.97438 * 17 16 15 19 19 S 1.75881 * 109.59352 * 359.75851 * 18 17 16 20 20 C 1.46500 * 120.00167 * 179.97438 * 13 11 10 21 21 C 1.52997 * 109.46790 * 89.99675 * 20 13 11 22 22 H 1.09007 * 110.27295 * 57.91433 * 21 20 13 23 23 C 1.54947 * 110.30872 * 179.97438 * 21 20 13 24 24 C 1.55306 * 100.97824 * 155.44022 * 23 21 20 25 25 C 1.54429 * 102.23000 * 325.92130 * 24 23 21 26 26 O 1.43234 * 107.60919 * 21.29662 * 25 24 23 27 27 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47466 * 59.99772 * 9 7 2 29 29 H 1.08997 * 109.47075 * 299.99462 * 9 7 2 30 30 H 1.09001 * 109.46833 * 60.00229 * 10 9 7 31 31 H 1.08999 * 109.47470 * 300.00368 * 10 9 7 32 32 H 1.08998 * 109.47464 * 30.00300 * 14 13 11 33 33 H 1.08996 * 109.47062 * 150.00412 * 14 13 11 34 34 H 1.08006 * 122.53813 * 359.97438 * 16 15 14 35 35 H 1.07999 * 122.54121 * 179.97438 * 17 16 15 36 36 H 1.08003 * 125.20288 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47142 * 330.00239 * 20 13 11 38 38 H 1.08998 * 109.47282 * 210.00002 * 20 13 11 39 39 H 1.09002 * 111.12777 * 273.38292 * 23 21 20 40 40 H 1.08995 * 111.12300 * 37.50185 * 23 21 20 41 41 H 1.09001 * 110.84858 * 84.08537 * 24 23 21 42 42 H 1.09006 * 110.84549 * 207.69503 * 24 23 21 43 43 H 1.09007 * 109.79290 * 261.79697 * 25 24 23 44 44 H 1.08999 * 109.92783 * 140.87682 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0021 13 7 2.1655 -6.1344 0.0018 14 6 3.6305 -6.1344 0.0024 15 6 4.1334 -6.1348 -1.4182 16 6 4.3901 -5.0451 -2.1433 17 6 4.8451 -5.2926 -3.4270 18 6 4.9584 -6.5833 -3.7441 19 16 4.4800 -7.5723 -2.3707 20 6 1.4330 -7.4032 0.0030 21 6 1.1774 -7.8458 -1.4391 22 1 2.1206 -7.9448 -1.9765 23 6 0.4033 -9.1878 -1.4606 24 6 -0.2839 -9.1106 -2.8512 25 6 -0.5685 -7.5994 -2.9920 26 8 0.3191 -6.9069 -2.1063 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 3.9936 -5.2443 0.5162 33 1 3.9936 -7.0242 0.5166 34 1 4.2532 -4.0454 -1.7581 35 1 5.0898 -4.5007 -4.1194 36 1 5.2960 -6.9629 -4.6972 37 1 0.4807 -7.2724 0.5170 38 1 2.0222 -8.1624 0.5172 39 1 1.0859 -10.0360 -1.4062 40 1 -0.3345 -9.2285 -0.6594 41 1 0.3900 -9.4531 -3.6365 42 1 -1.2115 -9.6831 -2.8577 43 1 -1.6024 -7.3912 -2.7165 44 1 -0.3884 -7.2815 -4.0189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292702479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:45 Heat of formation + Delta-G solvation = -49.596364 kcal Electronic energy + Delta-G solvation = -26012.287948 eV Core-core repulsion = 22442.369814 eV Total energy + Delta-G solvation = -3569.918133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.90098 -38.77698 -37.66611 -35.28731 -33.44016 -32.14462 -31.58902 -30.54457 -29.61548 -26.35777 -26.22633 -24.60292 -23.02686 -21.90363 -21.50782 -20.80073 -19.34890 -18.60948 -17.26464 -16.97970 -16.49029 -15.99346 -15.86565 -15.52211 -15.34009 -14.58169 -14.42591 -14.37894 -13.50072 -13.34502 -13.14806 -13.12498 -12.88275 -12.67503 -12.48049 -12.17051 -11.98028 -11.82074 -11.72154 -11.58747 -11.27544 -11.12980 -11.05666 -10.90247 -10.86763 -10.75513 -10.55018 -9.82225 -9.52458 -9.40430 -9.10108 -8.88114 -8.69197 -8.43164 -8.27833 -8.22108 -5.90058 -3.94273 0.96627 1.62122 1.96561 2.76689 3.37063 3.37718 3.42143 3.43353 3.46463 3.96624 4.42832 4.51566 4.66825 4.80232 4.85144 4.97492 5.09305 5.13421 5.19504 5.25542 5.44596 5.48362 5.50818 5.56623 5.58838 5.61220 5.63405 5.65052 5.76697 5.85226 6.00848 6.11645 6.18212 6.28506 6.32179 6.39166 6.55944 6.79147 6.98985 7.28955 7.80355 7.84407 7.95823 8.15219 8.45520 8.92669 9.14703 9.68724 11.20878 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004193 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.192263 B = 6676.154074 C = 7911.069233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.039 3.961 10 C -0.133 4.133 11 C 0.517 3.483 12 O -0.512 6.512 13 N -0.618 5.618 14 C 0.182 3.818 15 C -0.189 4.189 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.215 4.215 19 S 0.079 5.921 20 C 0.116 3.884 21 C 0.055 3.945 22 H 0.078 0.922 23 C -0.151 4.151 24 C -0.153 4.153 25 C 0.050 3.950 26 O -0.352 6.352 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 -21.844 -5.013 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.173 4.173 11 C 0.307 3.693 12 O -0.384 6.384 13 N -0.353 5.353 14 C 0.056 3.944 15 C -0.308 4.308 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.351 4.351 19 S 0.341 5.659 20 C -0.008 4.008 21 C -0.005 4.005 22 H 0.096 0.904 23 C -0.189 4.189 24 C -0.191 4.191 25 C -0.027 4.027 26 O -0.270 6.270 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.068 -23.019 -4.699 24.840 hybrid contribution 0.596 2.100 -0.675 2.285 sum 8.664 -20.918 -5.374 23.271 Atomic orbital electron populations 1.69991 1.06036 1.26568 1.50201 1.25006 0.94777 0.99088 0.95391 0.86691 0.79577 0.83387 0.78500 1.20289 1.21333 1.20278 1.21176 0.92786 0.91055 1.51346 0.92767 1.18876 0.93159 0.89277 0.98547 1.22032 1.00849 0.92342 1.02048 1.21418 0.88456 0.85136 0.74273 1.90667 1.14165 1.86805 1.46785 1.48118 1.04997 1.06126 1.76095 1.19955 0.80641 1.04251 0.89528 1.24999 1.08618 0.95411 1.01740 1.20472 1.00587 1.00173 0.94006 1.20251 1.01952 0.96392 0.97098 1.25545 1.10121 0.96830 1.02573 1.83936 1.64810 1.10744 1.06377 1.21580 0.98479 0.85748 0.94967 1.23709 0.94607 0.87681 0.94457 0.90402 1.23271 0.99919 0.97902 0.97801 1.23096 1.01345 0.97218 0.97403 1.23084 0.94786 0.90553 0.94324 1.88671 1.49707 1.30624 1.58040 0.92970 0.95828 0.95969 0.90620 0.90127 0.87757 0.89793 0.83136 0.84190 0.82238 0.89279 0.90153 0.90178 0.90238 0.90854 0.90287 0.91571 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 1.07 4.26 -27.88 -0.12 0.96 16 10 C -0.13 -2.81 4.19 -27.88 -0.12 -2.92 16 11 C 0.52 10.58 7.31 -10.98 -0.08 10.50 16 12 O -0.51 -12.66 14.83 -0.19 0.00 -12.66 16 13 N -0.62 -9.50 2.44 -175.06 -0.43 -9.93 16 14 C 0.18 2.18 5.75 -5.19 -0.03 2.15 16 15 C -0.19 -2.37 5.86 -36.00 -0.21 -2.58 16 16 C -0.12 -1.65 9.36 -41.21 -0.39 -2.03 16 17 C -0.13 -1.53 10.18 -41.21 -0.42 -1.95 16 18 C -0.22 -2.33 11.23 29.04 0.33 -2.00 16 19 S 0.08 0.84 20.94 -107.50 -2.25 -1.41 16 20 C 0.12 1.55 5.22 -4.04 -0.02 1.53 16 21 C 0.05 0.72 3.69 -25.70 -0.09 0.63 16 22 H 0.08 0.99 5.21 -51.93 -0.27 0.72 16 23 C -0.15 -1.49 6.57 -24.48 -0.16 -1.65 16 24 C -0.15 -1.49 7.02 -24.76 -0.17 -1.66 16 25 C 0.05 0.66 7.79 37.91 0.30 0.96 16 26 O -0.35 -6.10 9.91 -40.98 -0.41 -6.51 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.02 0.67 8.10 -51.93 -0.42 0.24 16 30 H 0.08 1.44 7.40 -51.93 -0.38 1.05 16 31 H 0.08 1.58 4.96 -51.93 -0.26 1.33 16 32 H 0.10 1.21 6.44 -51.93 -0.33 0.88 16 33 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 34 H 0.15 2.16 5.86 -52.48 -0.31 1.85 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.09 1.37 7.42 -51.93 -0.39 0.99 16 38 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -35.89 365.50 -9.99 -45.88 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.52 Total: 1.16 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.60 Total: -11.79 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.31 Total: -37.01 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.41 Total: -19.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.25 Total: -1.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.89 -9.99 -45.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292702479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.721 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds