Wall clock time and date at job start Tue Mar 31 2020 13:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48495 * 109.46940 * 239.99843 * 3 2 1 5 5 H 1.48496 * 109.46753 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47017 * 119.99567 * 3 2 1 7 7 C 1.37878 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47093 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99764 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00015 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99771 * 0.02562 * 13 11 10 15 15 C 1.50700 * 109.46920 * 270.00043 * 14 13 11 16 16 C 1.33385 * 125.20501 * 90.00457 * 15 14 13 17 17 C 1.38422 * 114.92261 * 179.97438 * 16 15 14 18 18 C 1.33389 * 114.92059 * 359.97438 * 17 16 15 19 19 S 1.75881 * 109.59352 * 359.75851 * 18 17 16 20 20 C 1.46500 * 120.00167 * 179.97438 * 13 11 10 21 21 C 1.52997 * 109.46790 * 89.99675 * 20 13 11 22 22 H 1.09007 * 110.27295 * 57.91433 * 21 20 13 23 23 C 1.54947 * 110.30872 * 179.97438 * 21 20 13 24 24 C 1.55306 * 100.97824 * 155.44022 * 23 21 20 25 25 C 1.54429 * 102.23000 * 325.92130 * 24 23 21 26 26 O 1.43234 * 107.60919 * 21.29662 * 25 24 23 27 27 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47466 * 59.99772 * 9 7 2 29 29 H 1.08997 * 109.47075 * 299.99462 * 9 7 2 30 30 H 1.09001 * 109.46833 * 60.00229 * 10 9 7 31 31 H 1.08999 * 109.47470 * 300.00368 * 10 9 7 32 32 H 1.08998 * 109.47464 * 30.00300 * 14 13 11 33 33 H 1.08996 * 109.47062 * 150.00412 * 14 13 11 34 34 H 1.08006 * 122.53813 * 359.97438 * 16 15 14 35 35 H 1.07999 * 122.54121 * 179.97438 * 17 16 15 36 36 H 1.08003 * 125.20288 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47142 * 330.00239 * 20 13 11 38 38 H 1.08998 * 109.47282 * 210.00002 * 20 13 11 39 39 H 1.09002 * 111.12777 * 273.38292 * 23 21 20 40 40 H 1.08995 * 111.12300 * 37.50185 * 23 21 20 41 41 H 1.09001 * 110.84858 * 84.08537 * 24 23 21 42 42 H 1.09006 * 110.84549 * 207.69503 * 24 23 21 43 43 H 1.09007 * 109.79290 * 261.79697 * 25 24 23 44 44 H 1.08999 * 109.92783 * 140.87682 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0021 13 7 2.1655 -6.1344 0.0018 14 6 3.6305 -6.1344 0.0024 15 6 4.1334 -6.1348 -1.4182 16 6 4.3901 -5.0451 -2.1433 17 6 4.8451 -5.2926 -3.4270 18 6 4.9584 -6.5833 -3.7441 19 16 4.4800 -7.5723 -2.3707 20 6 1.4330 -7.4032 0.0030 21 6 1.1774 -7.8458 -1.4391 22 1 2.1206 -7.9448 -1.9765 23 6 0.4033 -9.1878 -1.4606 24 6 -0.2839 -9.1106 -2.8512 25 6 -0.5685 -7.5994 -2.9920 26 8 0.3191 -6.9069 -2.1063 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 3.9936 -5.2443 0.5162 33 1 3.9936 -7.0242 0.5166 34 1 4.2532 -4.0454 -1.7581 35 1 5.0898 -4.5007 -4.1194 36 1 5.2960 -6.9629 -4.6972 37 1 0.4807 -7.2724 0.5170 38 1 2.0222 -8.1624 0.5172 39 1 1.0859 -10.0360 -1.4062 40 1 -0.3345 -9.2285 -0.6594 41 1 0.3900 -9.4531 -3.6365 42 1 -1.2115 -9.6831 -2.8577 43 1 -1.6024 -7.3912 -2.7165 44 1 -0.3884 -7.2815 -4.0189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292702479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:45 Heat of formation + Delta-G solvation = -72.228037 kcal Electronic energy + Delta-G solvation = -26013.269331 eV Core-core repulsion = 22442.369814 eV Total energy + Delta-G solvation = -3570.899516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18936 -39.96433 -38.72000 -36.61616 -35.57821 -33.34298 -32.97256 -31.99880 -30.71439 -28.10592 -27.22804 -26.11413 -24.02015 -23.50768 -22.46117 -22.10013 -20.45651 -19.87266 -18.85679 -18.13249 -17.87870 -17.26114 -17.10661 -16.87773 -16.48851 -16.36194 -15.91996 -15.58243 -14.72204 -14.66161 -14.32271 -14.18811 -14.09240 -13.91804 -13.78494 -13.58251 -13.42359 -13.10889 -12.90337 -12.73727 -12.61661 -12.55332 -12.42876 -12.25131 -12.05722 -11.87804 -11.76408 -11.64853 -11.49860 -11.30791 -10.60585 -10.55366 -10.47688 -9.76510 -9.54484 -9.16046 -8.16666 -6.31213 0.03994 0.75160 1.07023 1.41191 1.46325 1.53888 1.73885 1.85218 2.22522 2.44063 2.98890 3.15911 3.58396 3.76846 3.83821 3.93050 3.99437 4.09367 4.21745 4.22581 4.31079 4.40414 4.43985 4.50192 4.58743 4.62893 4.69116 4.71926 4.79684 4.81203 4.87184 4.97361 5.04552 5.09676 5.25058 5.27718 5.40631 5.48362 5.56614 5.63946 5.66621 5.85792 6.18272 6.26904 6.42463 6.86707 7.37541 7.40411 8.96065 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004193 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.192263 B = 6676.154074 C = 7911.069233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.049 3.951 10 C -0.122 4.122 11 C 0.516 3.484 12 O -0.569 6.569 13 N -0.605 5.605 14 C 0.174 3.826 15 C -0.206 4.206 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.213 4.213 19 S 0.126 5.874 20 C 0.110 3.890 21 C 0.047 3.953 22 H 0.086 0.914 23 C -0.142 4.142 24 C -0.141 4.141 25 C 0.037 3.963 26 O -0.401 6.401 27 H 0.262 0.738 28 H -0.026 1.026 29 H -0.019 1.019 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.186 0.814 37 H 0.062 0.938 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.148 -24.163 -5.311 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.011 3.989 10 C -0.161 4.161 11 C 0.306 3.694 12 O -0.447 6.447 13 N -0.337 5.337 14 C 0.050 3.950 15 C -0.324 4.324 16 C -0.174 4.174 17 C -0.180 4.180 18 C -0.348 4.348 19 S 0.389 5.611 20 C -0.013 4.013 21 C -0.012 4.012 22 H 0.103 0.897 23 C -0.180 4.180 24 C -0.179 4.179 25 C -0.039 4.039 26 O -0.321 6.321 27 H 0.071 0.929 28 H -0.008 1.008 29 H -0.001 1.001 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.203 0.797 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.282 -25.399 -4.998 28.237 hybrid contribution -0.377 2.739 -0.627 2.835 sum 10.905 -22.660 -5.625 25.768 Atomic orbital electron populations 1.70186 1.08398 1.27807 1.51434 1.26136 0.95672 1.03910 0.94566 0.85386 0.78085 0.77320 0.79538 1.18735 1.21310 1.18460 1.21646 0.93880 0.91488 1.50889 0.90643 1.18619 0.93520 0.92535 0.94198 1.21796 0.99438 0.90840 1.04027 1.21188 0.87653 0.86475 0.74110 1.90644 1.16431 1.87754 1.49859 1.47979 1.06589 1.05310 1.73848 1.20307 0.78124 1.06537 0.90052 1.25068 1.08778 0.96488 1.02082 1.20523 1.01915 0.99884 0.95111 1.20368 1.03178 0.97521 0.96927 1.25947 1.08642 0.96468 1.03756 1.83679 1.63542 1.08717 1.05120 1.21883 0.98015 0.85543 0.95833 1.23913 0.94851 0.88794 0.93631 0.89689 1.23284 1.00085 0.96970 0.97693 1.23076 1.02681 0.94223 0.97906 1.23241 0.93702 0.93386 0.93618 1.88641 1.50856 1.33520 1.59088 0.92907 1.00774 1.00107 0.88049 0.88549 0.87531 0.85644 0.84918 0.83538 0.79661 0.91964 0.85317 0.86734 0.90420 0.89193 0.88413 0.92933 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.32 13.29 21.45 0.28 -61.03 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.05 2.88 4.26 29.85 0.13 3.01 16 10 C -0.12 -5.32 4.19 29.85 0.13 -5.19 16 11 C 0.52 22.00 7.31 87.66 0.64 22.64 16 12 O -0.57 -30.30 14.83 2.47 0.04 -30.26 16 13 N -0.60 -18.19 2.44 -826.17 -2.02 -20.21 16 14 C 0.17 3.77 5.75 85.63 0.49 4.26 16 15 C -0.21 -4.76 5.86 24.59 0.14 -4.62 16 16 C -0.14 -3.79 9.36 21.21 0.20 -3.60 16 17 C -0.15 -3.47 10.18 21.22 0.22 -3.26 16 18 C -0.21 -4.04 11.23 66.72 0.75 -3.29 16 19 S 0.13 2.26 20.94 -56.49 -1.18 1.08 16 20 C 0.11 2.78 5.22 86.38 0.45 3.24 16 21 C 0.05 1.16 3.69 31.26 0.12 1.27 16 22 H 0.09 1.94 5.21 -2.38 -0.01 1.93 16 23 C -0.14 -2.40 6.57 32.05 0.21 -2.19 16 24 C -0.14 -2.43 7.02 31.87 0.22 -2.20 16 25 C 0.04 1.01 7.79 72.47 0.56 1.58 16 26 O -0.40 -14.32 9.91 -143.49 -1.42 -15.74 16 27 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 28 H -0.03 -1.78 8.10 -2.39 -0.02 -1.79 16 29 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 30 H 0.10 3.86 7.40 -2.39 -0.02 3.84 16 31 H 0.10 3.91 4.96 -2.39 -0.01 3.89 16 32 H 0.11 2.27 6.44 -2.39 -0.02 2.25 16 33 H 0.13 1.71 7.89 -2.39 -0.02 1.70 16 34 H 0.13 3.88 5.86 -2.91 -0.02 3.87 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.06 1.95 7.42 -2.39 -0.02 1.93 16 38 H 0.13 1.98 7.89 -2.39 -0.02 1.96 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -85.30 365.50 3.68 -81.62 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.00 Total: 17.04 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 4.95 Total: -19.81 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.73 Total: -81.24 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -1.39 Total: -46.00 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.18 Total: 1.08 kcal Total: -85.30 3.68 -81.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292702479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.397 kcal (2) G-P(sol) polarization free energy of solvation -85.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds