Wall clock time and date at job start Tue Mar 31 2020 14:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00057 * 2 1 4 4 N 1.46495 * 109.47435 * 124.99620 * 3 2 1 5 5 C 1.46499 * 120.00349 * 275.00459 * 4 3 2 6 6 C 1.50699 * 109.47184 * 274.99857 * 5 4 3 7 7 H 1.07997 * 119.99703 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99937 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99904 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00179 * 359.97438 * 8 6 5 11 11 H 1.48492 * 109.47364 * 90.00525 * 10 8 6 12 12 H 1.48501 * 109.47044 * 210.00649 * 10 8 6 13 13 H 1.48508 * 109.47218 * 330.00195 * 10 8 6 14 14 S 1.65604 * 119.99857 * 95.00190 * 4 3 2 15 15 O 1.42101 * 104.27394 * 333.93134 * 14 4 3 16 16 O 1.42104 * 104.27983 * 206.07600 * 14 4 3 17 17 C 1.81398 * 104.44779 * 90.00187 * 14 4 3 18 18 C 1.50706 * 109.47020 * 180.02562 * 17 14 4 19 19 C 1.38228 * 119.99983 * 270.21421 * 18 17 14 20 20 C 1.50698 * 120.00340 * 0.02562 * 19 18 17 21 21 C 1.38238 * 120.00110 * 180.21781 * 19 18 17 22 22 C 1.38234 * 119.99675 * 359.52133 * 21 19 18 23 23 C 1.38235 * 120.00220 * 0.28720 * 22 21 19 24 24 C 1.38234 * 119.99892 * 89.99641 * 18 17 14 25 25 C 1.50706 * 120.00223 * 0.02562 * 24 18 17 26 26 H 1.08004 * 119.99149 * 180.02562 * 1 2 3 27 27 H 1.07992 * 120.00304 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99979 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46887 * 5.00154 * 3 2 1 30 30 H 1.08995 * 109.47161 * 245.00501 * 3 2 1 31 31 H 1.09005 * 109.47150 * 34.99629 * 5 4 3 32 32 H 1.09002 * 109.47426 * 154.99641 * 5 4 3 33 33 H 0.96997 * 119.99942 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47168 * 60.00349 * 17 14 4 35 35 H 1.08992 * 109.47119 * 299.99613 * 17 14 4 36 36 H 1.09000 * 109.47366 * 270.19898 * 20 19 18 37 37 H 1.09000 * 109.46813 * 30.19557 * 20 19 18 38 38 H 1.09001 * 109.47363 * 150.20060 * 20 19 18 39 39 H 1.08002 * 120.00519 * 179.80752 * 21 19 18 40 40 H 1.07999 * 120.00009 * 180.25939 * 22 21 19 41 41 H 1.07996 * 120.00471 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46845 * 270.01942 * 25 24 18 43 43 H 1.08998 * 109.46732 * 30.01367 * 25 24 18 44 44 H 1.08993 * 109.47519 * 150.01860 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5284 1.7622 2.4523 6 6 2.5990 3.2647 2.5450 7 1 2.9553 3.8413 1.7042 8 6 2.2098 3.9029 3.7035 9 7 2.2709 5.2142 3.7842 10 14 1.5943 2.9053 5.1579 11 1 2.7392 2.5488 6.0337 12 1 0.6124 3.7091 5.9293 13 1 0.9417 1.6650 4.6668 14 16 4.5713 0.8760 0.9173 15 8 4.5315 -0.0148 -0.1891 16 8 4.9849 0.4307 2.2019 17 6 5.4289 2.4102 0.4688 18 6 6.8910 2.1214 0.2448 19 6 7.7806 2.1999 1.2999 20 6 7.2884 2.5738 2.6743 21 6 9.1224 1.9393 1.0935 22 6 9.5730 1.5906 -0.1659 23 6 8.6827 1.5081 -1.2202 24 6 7.3417 1.7735 -1.0148 25 6 6.3712 1.6836 -2.1642 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 1.4982 1.4372 2.5982 32 1 3.1613 1.3205 3.2221 33 1 1.9967 5.6632 4.5990 34 1 5.3210 3.1359 1.2749 35 1 4.9949 2.8152 -0.4453 36 1 7.3296 3.6566 2.7929 37 1 6.2601 2.2339 2.7969 38 1 7.9195 2.1016 3.4272 39 1 9.8180 2.0037 1.9172 40 1 10.6206 1.3829 -0.3263 41 1 9.0348 1.2361 -2.2043 42 1 5.9736 0.6705 -2.2257 43 1 5.5530 2.3858 -2.0046 44 1 6.8848 1.9293 -3.0936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293024959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:54 Heat of formation + Delta-G solvation = -31.091697 kcal Electronic energy + Delta-G solvation = -26414.033996 eV Core-core repulsion = 22844.918285 eV Total energy + Delta-G solvation = -3569.115711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.71963 -36.73968 -36.48288 -35.40065 -33.50436 -33.40814 -33.21663 -32.03283 -28.57202 -28.13218 -26.56780 -26.31418 -25.02027 -22.02621 -20.92371 -20.64037 -19.77283 -18.24262 -17.07496 -17.01135 -16.36343 -16.28597 -15.72355 -15.60784 -14.66525 -14.52593 -14.25579 -13.98030 -13.66727 -13.11984 -13.05621 -13.00220 -12.87480 -12.68555 -12.57764 -12.52648 -12.20202 -11.95741 -11.67762 -11.55344 -11.53755 -11.38079 -11.32464 -11.03346 -10.87341 -10.86420 -10.79929 -10.65200 -10.39365 -10.21781 -9.68204 -9.14042 -8.70666 -8.55797 -8.47962 -8.09584 -6.22330 -4.24122 0.63319 1.41070 1.47998 2.52838 3.23005 3.28760 3.34072 3.35875 3.74340 4.25465 4.30947 4.54769 4.66720 4.85988 4.93443 5.00364 5.09962 5.18797 5.24196 5.33140 5.38050 5.55628 5.59596 5.60899 5.70738 5.72436 5.89865 5.94902 5.97426 6.04135 6.08338 6.20065 6.28872 6.32496 6.48229 6.49226 6.57353 6.71553 6.84011 6.90826 6.95004 7.05292 7.10341 7.33389 7.48929 8.32997 8.78038 9.38499 10.89670 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.005517 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.171163 B = 5074.184479 C = 6500.296287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.155 3.845 4 N -0.976 5.976 5 C 0.211 3.789 6 C -0.550 4.550 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.892 5.892 10 Si 0.867 3.133 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.608 3.392 15 O -0.966 6.966 16 O -0.952 6.952 17 C -0.593 4.593 18 C -0.088 4.088 19 C -0.059 4.059 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.067 4.067 25 C -0.131 4.131 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 -6.211 -9.225 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.179 4.179 3 C 0.029 3.971 4 N -0.813 5.813 5 C 0.088 3.912 6 C -0.589 4.589 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.529 5.529 10 Si 0.693 3.307 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.701 3.299 15 O -0.957 6.957 16 O -0.942 6.942 17 C -0.719 4.719 18 C -0.090 4.090 19 C -0.060 4.060 20 C -0.191 4.191 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.068 4.068 25 C -0.187 4.187 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.165 -6.897 -8.977 13.957 hybrid contribution -0.358 0.521 0.745 0.977 sum 7.807 -6.376 -8.231 13.013 Atomic orbital electron populations 1.23806 0.95815 1.01647 1.01517 1.23458 0.96266 0.99398 0.98825 1.20238 0.93225 0.95681 0.87958 1.57242 1.24376 1.82776 1.16884 1.19642 0.96770 0.96034 0.78750 1.21464 1.45870 0.89879 1.01638 0.90194 1.24830 0.94609 0.94738 0.98299 1.69889 1.47233 1.07731 1.28061 0.86971 0.79634 0.80816 0.83251 1.19567 1.20954 1.18623 1.05087 0.73902 0.76560 0.74307 1.93514 1.86108 1.60614 1.55441 1.93535 1.81846 1.79089 1.39760 1.29859 1.03367 1.24917 1.13727 1.18821 0.92573 1.03914 0.93661 1.19946 0.93263 0.96998 0.95767 1.21077 1.03655 1.02176 0.92143 1.21015 0.94804 1.01495 0.97420 1.21137 0.99472 0.99270 0.92939 1.20945 0.92484 1.02242 0.99264 1.19828 0.94909 0.97901 0.94183 1.21049 0.98153 1.03928 0.95557 0.88855 0.88308 0.87361 0.89217 0.90542 0.94213 0.93553 0.92381 0.82636 0.84488 0.90390 0.89552 0.91057 0.85715 0.85951 0.85849 0.89226 0.91254 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.52 9.84 -36.03 -0.35 -2.87 16 3 C 0.15 2.59 5.69 -5.20 -0.03 2.57 16 4 N -0.98 -19.20 2.68 -116.95 -0.31 -19.51 16 5 C 0.21 4.83 4.48 -5.19 -0.02 4.80 16 6 C -0.55 -14.08 9.94 -34.44 -0.34 -14.42 16 7 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 10 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 S 2.61 49.89 5.33 -107.50 -0.57 49.31 16 15 O -0.97 -18.51 16.32 -57.54 -0.94 -19.45 16 16 O -0.95 -20.84 14.84 -57.54 -0.85 -21.70 16 17 C -0.59 -9.96 5.16 36.01 0.19 -9.78 16 18 C -0.09 -1.43 5.14 -104.62 -0.54 -1.97 16 19 C -0.06 -0.93 5.88 -104.63 -0.62 -1.54 16 20 C -0.13 -2.14 9.19 36.00 0.33 -1.80 16 21 C -0.13 -1.72 9.70 -39.58 -0.38 -2.11 16 22 C -0.11 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.13 -1.65 9.70 -39.58 -0.38 -2.03 16 24 C -0.07 -0.97 5.88 -104.62 -0.62 -1.58 16 25 C -0.13 -1.62 9.48 36.01 0.34 -1.28 16 26 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 30 H 0.08 1.10 7.61 -51.93 -0.40 0.71 16 31 H 0.04 0.90 7.17 -51.93 -0.37 0.53 16 32 H 0.05 1.10 6.24 -51.93 -0.32 0.78 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.16 2.78 6.72 -51.92 -0.35 2.43 16 35 H 0.14 1.98 5.95 -51.93 -0.31 1.67 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.58 4.93 -51.93 -0.26 1.32 16 38 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.09 1.17 7.59 -51.93 -0.39 0.77 16 43 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -31.09 369.99 -10.00 -41.09 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.49 Total: 7.49 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -2.51 Total: -33.92 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.46 Total: -44.15 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.79 Total: -41.14 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -0.57 Total: 49.31 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.09 -10.00 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293024959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.999 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds