Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00207 * 2 1 4 4 C 1.52996 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47381 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46705 * 304.68371 * 5 4 3 7 7 O 1.42898 * 109.47137 * 64.68006 * 5 4 3 8 8 C 1.50700 * 109.47215 * 184.68624 * 5 4 3 9 9 O 1.21294 * 119.99703 * 252.61872 * 8 5 4 10 10 N 1.34777 * 120.00115 * 72.61432 * 8 5 4 11 11 C 1.46493 * 119.99901 * 4.99130 * 10 8 5 12 12 C 1.50709 * 109.47023 * 264.11562 * 11 10 8 13 13 H 1.07999 * 119.99614 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99817 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00312 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46895 * 90.00477 * 16 14 12 18 18 H 1.48493 * 109.47529 * 210.00294 * 16 14 12 19 19 H 1.48494 * 109.47148 * 330.00791 * 16 14 12 20 20 C 1.39923 * 119.99840 * 184.99080 * 10 8 5 21 21 C 1.38878 * 120.07170 * 353.18069 * 20 10 8 22 22 C 1.38111 * 119.93065 * 179.97438 * 21 20 10 23 23 C 1.38282 * 120.06991 * 0.25660 * 22 21 20 24 24 C 1.50694 * 119.92958 * 179.74624 * 23 22 21 25 25 C 1.38287 * 120.13808 * 359.48698 * 23 22 21 26 26 C 1.38110 * 120.07081 * 0.50938 * 25 23 22 27 27 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47351 * 300.00002 * 1 2 3 29 29 H 1.09002 * 109.47111 * 60.00349 * 1 2 3 30 30 H 1.09004 * 109.47124 * 59.99574 * 3 2 1 31 31 H 1.09009 * 109.46820 * 299.99941 * 3 2 1 32 32 H 1.08996 * 109.47066 * 59.99543 * 4 3 2 33 33 H 1.09003 * 109.46784 * 300.00164 * 4 3 2 34 34 H 0.96707 * 113.99612 * 60.00250 * 7 5 4 35 35 H 1.08993 * 109.47270 * 24.11363 * 11 10 8 36 36 H 1.08995 * 109.46977 * 144.11992 * 11 10 8 37 37 H 0.97000 * 119.99751 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.03186 * 359.96251 * 21 20 10 39 39 H 1.08001 * 119.96233 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47377 * 90.00135 * 24 23 22 41 41 H 1.08998 * 109.47105 * 209.99631 * 24 23 22 42 42 H 1.09007 * 109.46997 * 329.99703 * 24 23 22 43 43 H 1.08001 * 119.96164 * 180.23830 * 25 23 22 44 44 H 1.07998 * 120.03446 * 179.76315 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0865 3.4307 0.0000 6 1 3.5980 3.9166 -0.8446 7 8 3.6329 4.0238 1.2184 8 6 5.5793 3.6016 -0.1167 9 8 6.2252 3.9632 0.8442 10 7 6.1965 3.3527 -1.2887 11 6 5.4061 3.0224 -2.4771 12 6 5.3331 1.5250 -2.6315 13 1 5.8264 0.8837 -1.9161 14 6 4.6373 0.9740 -3.6865 15 7 4.5731 -0.3328 -3.8209 16 14 3.7846 2.0832 -4.9242 17 1 4.7214 2.4012 -6.0317 18 1 2.5902 1.3899 -5.4699 19 1 3.3644 3.3405 -4.2550 20 6 7.5922 3.4099 -1.3703 21 6 8.3348 3.8594 -0.2863 22 6 9.7123 3.9141 -0.3698 23 6 10.3518 3.5269 -1.5331 24 6 11.8546 3.5933 -1.6228 25 6 9.6155 3.0738 -2.6124 26 6 8.2378 3.0166 -2.5352 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8901 32 1 4.1609 1.4704 -0.8908 33 1 4.1616 1.4702 0.8891 34 1 4.0271 3.6395 2.0135 35 1 4.3996 3.4259 -2.3677 36 1 5.8776 3.4559 -3.3590 37 1 4.0832 -0.7204 -4.5630 38 1 7.8356 4.1661 0.6210 39 1 10.2903 4.2640 0.4727 40 1 12.2807 2.6471 -1.2891 41 1 12.1491 3.7801 -2.6555 42 1 12.2211 4.4006 -0.9887 43 1 10.1182 2.7684 -3.5182 44 1 7.6631 2.6663 -3.3798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294606367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = -50.432344 kcal Electronic energy + Delta-G solvation = -25893.283010 eV Core-core repulsion = 22323.328626 eV Total energy + Delta-G solvation = -3569.954384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58279 -38.45760 -36.56256 -35.73492 -32.97203 -32.49388 -31.44401 -30.40619 -28.83954 -28.31260 -27.59101 -25.43715 -23.20751 -22.16062 -21.81039 -21.01113 -19.39546 -17.38887 -17.16683 -16.87771 -16.04922 -15.79412 -15.45519 -15.00043 -14.68115 -14.45764 -14.16366 -13.90846 -13.57691 -13.50100 -13.41197 -13.21911 -13.01881 -12.85810 -12.66992 -12.60959 -12.13122 -12.00788 -11.91792 -11.66171 -11.50361 -11.23040 -11.09062 -10.83217 -10.71956 -10.65527 -10.41177 -10.18612 -9.80026 -9.59311 -9.23865 -8.84403 -8.65886 -8.39010 -7.30128 -7.20879 -6.34397 -4.37968 1.72616 1.95661 1.96387 2.89889 2.99578 3.07123 3.13506 3.17794 3.41502 4.13250 4.36156 4.51983 4.72754 4.94878 5.16901 5.24266 5.26063 5.27724 5.30952 5.34755 5.44973 5.52491 5.56513 5.64015 5.78832 5.79212 5.89867 5.91414 6.04069 6.07229 6.17118 6.28338 6.36405 6.40997 6.60956 6.85988 6.89537 6.91162 7.07685 7.16199 7.21319 7.66868 7.72335 7.82852 8.20200 8.49419 8.69388 9.20555 10.76163 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004745 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.593694 B = 5900.020226 C = 7352.806451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.245 6.245 3 C -0.069 4.069 4 C -0.160 4.160 5 C 0.106 3.894 6 H 0.124 0.876 7 O -0.546 6.546 8 C 0.493 3.507 9 O -0.535 6.535 10 N -0.523 5.523 11 C 0.196 3.804 12 C -0.551 4.551 13 H 0.086 0.914 14 C 0.091 3.909 15 N -0.867 5.867 16 Si 0.861 3.139 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.161 3.839 21 C -0.174 4.174 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.105 4.105 25 C -0.104 4.104 26 C -0.135 4.135 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.069 0.931 34 H 0.380 0.620 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.270 0.730 38 H 0.178 0.822 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.118 0.882 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 5.602 4.386 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.019 6.019 3 C -0.217 4.217 4 C -0.198 4.198 5 C 0.042 3.958 6 H 0.142 0.858 7 O -0.351 6.351 8 C 0.282 3.718 9 O -0.415 6.415 10 N -0.243 5.243 11 C 0.075 3.925 12 C -0.588 4.588 13 H 0.104 0.896 14 C -0.116 4.116 15 N -0.502 5.502 16 Si 0.687 3.313 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.065 3.935 21 C -0.193 4.193 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.162 4.162 25 C -0.123 4.123 26 C -0.155 4.155 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.229 0.771 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.194 0.806 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.313 5.088 4.348 6.700 hybrid contribution -1.060 0.955 -0.665 1.574 sum -0.748 6.043 3.683 7.117 Atomic orbital electron populations 1.23354 0.95977 1.05988 1.04325 1.87288 1.05186 1.11461 1.97957 1.23195 1.00070 0.94016 1.04449 1.22508 0.93949 0.94699 1.08646 1.21809 0.89823 0.95107 0.89043 0.85849 1.86535 1.68762 1.64320 1.15463 1.21579 0.91443 0.76597 0.82138 1.90271 1.65312 1.47340 1.38583 1.45665 1.04704 1.62468 1.11423 1.20161 0.90901 0.98573 0.82830 1.21081 1.35867 0.88638 1.13218 0.89593 1.24770 0.95237 0.94770 0.96856 1.69858 1.39928 1.09885 1.30498 0.87087 0.80280 0.81324 0.82600 1.19700 1.20507 1.18888 1.18028 0.82432 0.97945 0.95049 1.22707 0.93937 1.01686 1.00992 1.20897 0.94266 1.00709 0.96842 1.19811 0.95527 1.02697 0.94793 1.20673 0.92093 1.01556 1.01837 1.20747 0.93238 1.00200 0.98120 1.21096 0.94522 1.01711 0.98182 0.88493 0.91090 0.90802 0.90373 0.90288 0.83198 0.91209 0.77111 0.94051 0.94332 0.91990 0.80569 0.86748 0.91924 0.92178 0.92262 0.86425 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 10.76 101.05 1.09 -0.46 16 2 S -0.24 -4.08 22.38 -107.50 -2.41 -6.48 16 3 C -0.07 -1.07 5.83 37.16 0.22 -0.86 16 4 C -0.16 -2.77 4.79 -26.73 -0.13 -2.89 16 5 C 0.11 1.77 2.59 -27.88 -0.07 1.70 16 6 H 0.12 2.00 6.55 -51.93 -0.34 1.66 16 7 O -0.55 -8.42 12.58 -54.82 -0.69 -9.11 16 8 C 0.49 9.45 6.93 -10.99 -0.08 9.38 16 9 O -0.53 -10.76 12.71 -14.04 -0.18 -10.94 16 10 N -0.52 -10.49 2.69 -114.74 -0.31 -10.80 16 11 C 0.20 4.01 3.19 -5.19 -0.02 4.00 16 12 C -0.55 -13.06 6.48 -34.44 -0.22 -13.29 16 13 H 0.09 2.34 7.85 -52.49 -0.41 1.93 16 14 C 0.09 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.87 -23.31 13.96 55.43 0.77 -22.54 16 16 Si 0.86 18.37 27.47 -169.99 -4.67 13.70 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 20 C 0.16 3.22 6.47 -83.69 -0.54 2.68 16 21 C -0.17 -3.30 9.05 -39.39 -0.36 -3.65 16 22 C -0.11 -1.79 9.69 -39.61 -0.38 -2.17 16 23 C -0.13 -1.99 5.88 -104.59 -0.62 -2.60 16 24 C -0.10 -1.24 10.01 36.00 0.36 -0.88 16 25 C -0.10 -1.74 9.69 -39.61 -0.38 -2.12 16 26 C -0.13 -2.58 9.02 -39.40 -0.36 -2.93 16 27 H 0.10 1.06 8.14 -51.92 -0.42 0.63 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.08 1.08 7.81 -51.92 -0.41 0.68 16 31 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.15 3.12 4.17 -51.93 -0.22 2.91 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.38 5.02 8.71 45.56 0.40 5.42 16 35 H 0.04 0.81 4.99 -51.93 -0.26 0.55 16 36 H 0.04 0.78 6.30 -51.93 -0.33 0.46 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 38 H 0.18 3.50 4.53 -56.21 -0.25 3.24 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.14 2.76 6.14 -52.49 -0.32 2.44 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -27.60 364.87 -9.09 -36.69 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -5.53 Total: 15.95 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.59 Total: -11.97 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.46 Total: -33.34 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.87 Total: -20.06 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.67 Total: 13.70 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.41 Total: -6.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.60 -9.09 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294606367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.742 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds