Wall clock time and date at job start Tue Mar 31 2020 14:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00207 * 2 1 4 4 C 1.52996 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47381 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46705 * 304.68371 * 5 4 3 7 7 O 1.42898 * 109.47137 * 64.68006 * 5 4 3 8 8 C 1.50700 * 109.47215 * 184.68624 * 5 4 3 9 9 O 1.21294 * 119.99703 * 252.61872 * 8 5 4 10 10 N 1.34777 * 120.00115 * 72.61432 * 8 5 4 11 11 C 1.46493 * 119.99901 * 4.99130 * 10 8 5 12 12 C 1.50709 * 109.47023 * 264.11562 * 11 10 8 13 13 H 1.07999 * 119.99614 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99817 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00312 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46895 * 90.00477 * 16 14 12 18 18 H 1.48493 * 109.47529 * 210.00294 * 16 14 12 19 19 H 1.48494 * 109.47148 * 330.00791 * 16 14 12 20 20 C 1.39923 * 119.99840 * 184.99080 * 10 8 5 21 21 C 1.38878 * 120.07170 * 353.18069 * 20 10 8 22 22 C 1.38111 * 119.93065 * 179.97438 * 21 20 10 23 23 C 1.38282 * 120.06991 * 0.25660 * 22 21 20 24 24 C 1.50694 * 119.92958 * 179.74624 * 23 22 21 25 25 C 1.38287 * 120.13808 * 359.48698 * 23 22 21 26 26 C 1.38110 * 120.07081 * 0.50938 * 25 23 22 27 27 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47351 * 300.00002 * 1 2 3 29 29 H 1.09002 * 109.47111 * 60.00349 * 1 2 3 30 30 H 1.09004 * 109.47124 * 59.99574 * 3 2 1 31 31 H 1.09009 * 109.46820 * 299.99941 * 3 2 1 32 32 H 1.08996 * 109.47066 * 59.99543 * 4 3 2 33 33 H 1.09003 * 109.46784 * 300.00164 * 4 3 2 34 34 H 0.96707 * 113.99612 * 60.00250 * 7 5 4 35 35 H 1.08993 * 109.47270 * 24.11363 * 11 10 8 36 36 H 1.08995 * 109.46977 * 144.11992 * 11 10 8 37 37 H 0.97000 * 119.99751 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.03186 * 359.96251 * 21 20 10 39 39 H 1.08001 * 119.96233 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47377 * 90.00135 * 24 23 22 41 41 H 1.08998 * 109.47105 * 209.99631 * 24 23 22 42 42 H 1.09007 * 109.46997 * 329.99703 * 24 23 22 43 43 H 1.08001 * 119.96164 * 180.23830 * 25 23 22 44 44 H 1.07998 * 120.03446 * 179.76315 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0865 3.4307 0.0000 6 1 3.5980 3.9166 -0.8446 7 8 3.6329 4.0238 1.2184 8 6 5.5793 3.6016 -0.1167 9 8 6.2252 3.9632 0.8442 10 7 6.1965 3.3527 -1.2887 11 6 5.4061 3.0224 -2.4771 12 6 5.3331 1.5250 -2.6315 13 1 5.8264 0.8837 -1.9161 14 6 4.6373 0.9740 -3.6865 15 7 4.5731 -0.3328 -3.8209 16 14 3.7846 2.0832 -4.9242 17 1 4.7214 2.4012 -6.0317 18 1 2.5902 1.3899 -5.4699 19 1 3.3644 3.3405 -4.2550 20 6 7.5922 3.4099 -1.3703 21 6 8.3348 3.8594 -0.2863 22 6 9.7123 3.9141 -0.3698 23 6 10.3518 3.5269 -1.5331 24 6 11.8546 3.5933 -1.6228 25 6 9.6155 3.0738 -2.6124 26 6 8.2378 3.0166 -2.5352 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2371 0.8900 31 1 1.8032 2.2371 -0.8901 32 1 4.1609 1.4704 -0.8908 33 1 4.1616 1.4702 0.8891 34 1 4.0271 3.6395 2.0135 35 1 4.3996 3.4259 -2.3677 36 1 5.8776 3.4559 -3.3590 37 1 4.0832 -0.7204 -4.5630 38 1 7.8356 4.1661 0.6210 39 1 10.2903 4.2640 0.4727 40 1 12.2807 2.6471 -1.2891 41 1 12.1491 3.7801 -2.6555 42 1 12.2211 4.4006 -0.9887 43 1 10.1182 2.7684 -3.5182 44 1 7.6631 2.6663 -3.3798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294606367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:09 Heat of formation + Delta-G solvation = -65.850883 kcal Electronic energy + Delta-G solvation = -25893.951608 eV Core-core repulsion = 22323.328626 eV Total energy + Delta-G solvation = -3570.622982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06417 -39.81801 -37.90569 -37.29815 -34.68912 -33.93070 -32.76404 -31.79894 -30.02907 -29.84461 -28.86761 -26.70062 -24.90147 -23.52379 -23.28304 -22.36371 -20.84450 -19.14250 -18.70603 -18.40616 -17.41332 -17.13377 -16.86164 -16.47058 -16.15164 -15.92532 -15.62781 -15.24290 -14.92064 -14.74471 -14.54451 -14.50914 -14.32276 -14.24527 -13.98593 -13.94075 -13.67981 -13.47807 -13.01460 -12.96587 -12.77359 -12.72649 -12.57026 -12.34931 -12.18255 -12.08347 -11.89558 -11.63990 -11.48354 -10.83646 -10.80431 -10.70879 -10.13182 -9.78515 -8.65863 -8.61350 -8.25898 -6.32173 0.33582 0.56531 0.76273 1.38426 1.41312 1.47763 1.50655 1.76987 1.93419 2.33556 2.96845 3.03997 3.19114 3.34411 3.81836 3.95469 4.03439 4.11219 4.14898 4.23191 4.28370 4.34982 4.37166 4.43034 4.47883 4.60254 4.63210 4.68833 4.78735 4.87026 4.90068 4.91697 4.99815 5.18001 5.22236 5.32322 5.44049 5.45444 5.54785 5.70546 5.80558 6.11437 6.28976 6.42614 6.53449 6.69479 6.98638 7.28850 8.88289 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004745 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.593694 B = 5900.020226 C = 7352.806451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.327 6.327 3 C -0.051 4.051 4 C -0.151 4.151 5 C 0.119 3.881 6 H 0.135 0.865 7 O -0.541 6.541 8 C 0.484 3.516 9 O -0.548 6.548 10 N -0.529 5.529 11 C 0.203 3.797 12 C -0.529 4.529 13 H 0.037 0.963 14 C 0.043 3.957 15 N -0.919 5.919 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.236 1.236 20 C 0.130 3.870 21 C -0.189 4.189 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.103 4.103 25 C -0.107 4.107 26 C -0.154 4.154 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.141 0.859 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 7.696 4.407 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.102 6.102 3 C -0.199 4.199 4 C -0.190 4.190 5 C 0.055 3.945 6 H 0.152 0.848 7 O -0.347 6.347 8 C 0.275 3.725 9 O -0.429 6.429 10 N -0.249 5.249 11 C 0.083 3.917 12 C -0.567 4.567 13 H 0.055 0.945 14 C -0.159 4.159 15 N -0.556 5.556 16 Si 0.741 3.259 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.159 1.159 20 C 0.036 3.964 21 C -0.209 4.209 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.159 4.159 25 C -0.126 4.126 26 C -0.174 4.174 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.184 0.816 39 H 0.160 0.840 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.159 0.841 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.338 7.210 4.393 8.450 hybrid contribution -0.942 0.256 -0.560 1.125 sum -0.604 7.466 3.833 8.414 Atomic orbital electron populations 1.23386 0.91056 1.07286 1.05769 1.87590 1.10770 1.13664 1.98170 1.23089 0.98465 0.92676 1.05664 1.22292 0.95350 0.94784 1.06536 1.21678 0.88145 0.94639 0.90051 0.84805 1.86518 1.68540 1.64184 1.15465 1.22082 0.92514 0.76179 0.81727 1.90263 1.65936 1.47963 1.38763 1.45677 1.04995 1.62709 1.11493 1.20011 0.91966 0.96174 0.83594 1.20965 1.34274 0.89897 1.11593 0.94475 1.25468 0.96000 0.95772 0.98699 1.70011 1.41888 1.12078 1.31636 0.86168 0.78952 0.80517 0.80294 1.19370 1.20986 1.15851 1.18319 0.82614 0.99526 0.95972 1.22713 0.95217 1.02588 1.00361 1.21248 0.93446 0.99899 0.98164 1.20264 0.97788 1.00468 0.93663 1.20744 0.88848 1.02865 1.03449 1.21086 0.92362 0.99557 0.99575 1.21114 0.95787 1.02909 0.97622 0.87295 0.88886 0.90007 0.88162 0.89787 0.86653 0.91897 0.75921 0.92232 0.93664 0.92240 0.81609 0.84021 0.90813 0.90630 0.90473 0.84099 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 10.76 113.37 1.22 -1.17 16 2 S -0.33 -10.97 22.38 -56.49 -1.26 -12.23 16 3 C -0.05 -1.54 5.83 71.98 0.42 -1.12 16 4 C -0.15 -5.29 4.79 30.59 0.15 -5.15 16 5 C 0.12 3.90 2.59 29.85 0.08 3.97 16 6 H 0.13 4.11 6.55 -2.39 -0.02 4.09 16 7 O -0.54 -15.82 12.58 -130.25 -1.64 -17.46 16 8 C 0.48 18.74 6.93 87.66 0.61 19.35 16 9 O -0.55 -22.28 12.71 15.65 0.20 -22.08 16 10 N -0.53 -21.63 2.69 -635.32 -1.71 -23.33 16 11 C 0.20 8.39 3.19 85.64 0.27 8.66 16 12 C -0.53 -26.11 6.48 25.60 0.17 -25.95 16 13 H 0.04 2.17 7.85 -2.91 -0.02 2.15 16 14 C 0.04 2.16 5.47 84.65 0.46 2.62 16 15 N -0.92 -51.62 13.96 21.45 0.30 -51.32 16 16 Si 0.92 37.58 27.47 68.60 1.88 39.46 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.24 -8.48 6.54 99.48 0.65 -7.83 16 20 C 0.13 5.33 6.47 38.15 0.25 5.57 16 21 C -0.19 -7.21 9.05 22.39 0.20 -7.01 16 22 C -0.11 -3.43 9.69 22.25 0.22 -3.22 16 23 C -0.12 -3.51 5.88 -19.84 -0.12 -3.63 16 24 C -0.10 -2.05 10.01 71.23 0.71 -1.34 16 25 C -0.11 -3.47 9.69 22.25 0.22 -3.25 16 26 C -0.15 -5.98 9.02 22.39 0.20 -5.78 16 27 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.09 1.68 8.14 -2.40 -0.02 1.66 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.10 2.57 7.81 -2.39 -0.02 2.55 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.12 5.01 4.17 -2.39 -0.01 5.00 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.39 9.83 8.71 -74.05 -0.64 9.18 16 35 H 0.06 2.25 4.99 -2.39 -0.01 2.24 16 36 H 0.05 1.82 6.30 -2.39 -0.02 1.81 16 37 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.17 6.67 4.53 -61.95 -0.28 6.39 16 39 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 42 H 0.08 1.30 8.08 -2.38 -0.02 1.28 16 43 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.12 5.05 6.14 -2.91 -0.02 5.04 16 Total: -1.00 -62.97 364.87 2.88 -60.09 By element: Atomic # 1 Polarization: 44.23 SS G_CDS: 0.05 Total: 44.29 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.05 Total: -17.42 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.41 Total: -74.65 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.44 Total: -39.54 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 1.88 Total: 39.46 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -1.26 Total: -12.23 kcal Total: -62.97 2.88 -60.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294606367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds