Wall clock time and date at job start Tue Mar 31 2020 13:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38304 * 120.08359 * 2 1 4 4 C 1.37830 * 120.23086 * 179.97438 * 3 2 1 5 5 C 1.39671 * 120.27920 * 359.97438 * 4 3 2 6 6 C 1.38591 * 119.02998 * 0.02562 * 5 4 3 7 7 C 1.38175 * 120.47829 * 0.02562 * 6 5 4 8 8 C 1.51224 * 108.54141 * 179.97438 * 6 5 4 9 9 C 1.53757 * 104.53252 * 359.97438 * 8 6 5 10 10 N 1.39576 * 129.31623 * 179.97438 * 5 4 3 11 11 S 1.65601 * 124.95903 * 359.97438 * 10 5 4 12 12 O 1.42099 * 104.27610 * 26.11363 * 11 10 5 13 13 O 1.42102 * 104.27841 * 153.97379 * 11 10 5 14 14 C 1.81406 * 104.44761 * 270.04353 * 11 10 5 15 15 C 1.52996 * 109.46770 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47029 * 299.99473 * 15 14 11 17 17 C 1.53002 * 109.47558 * 59.99734 * 15 14 11 18 18 C 1.50702 * 109.46965 * 179.97438 * 15 14 11 19 19 H 1.07999 * 119.99965 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00064 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00335 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00105 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46608 * 59.99850 * 22 20 18 24 24 H 1.48495 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47025 * 300.00170 * 22 20 18 26 26 H 1.09002 * 109.47708 * 89.99779 * 1 2 3 27 27 H 1.09006 * 109.47347 * 210.00151 * 1 2 3 28 28 H 1.09003 * 109.47428 * 329.99511 * 1 2 3 29 29 H 1.08008 * 119.88180 * 359.96188 * 3 2 1 30 30 H 1.08000 * 119.85596 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.92609 * 179.97438 * 7 6 5 32 32 H 1.09005 * 110.42310 * 241.24093 * 8 6 5 33 33 H 1.08997 * 110.42549 * 118.76646 * 8 6 5 34 34 H 1.09000 * 110.29448 * 118.93144 * 9 8 6 35 35 H 1.09002 * 110.29751 * 241.06991 * 9 8 6 36 36 H 1.09002 * 109.46828 * 299.99387 * 14 11 10 37 37 H 1.08991 * 109.47045 * 59.99559 * 14 11 10 38 38 H 1.09001 * 109.47280 * 60.00776 * 16 15 14 39 39 H 1.09006 * 109.47184 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47492 * 300.00700 * 16 15 14 41 41 H 1.08998 * 109.46625 * 60.00038 * 17 15 14 42 42 H 1.08998 * 109.47057 * 179.97438 * 17 15 14 43 43 H 1.08993 * 109.46780 * 299.99982 * 17 15 14 44 44 H 0.97002 * 120.00572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1967 0.0000 4 6 3.5785 1.2003 0.0005 5 6 4.2859 -0.0041 0.0016 6 6 3.5816 -1.1977 0.0016 7 6 2.1998 -1.1961 0.0000 8 6 4.5720 -2.3405 0.0022 9 6 5.9494 -1.6572 0.0020 10 7 5.6649 -0.2198 0.0018 11 16 6.8121 0.9745 0.0001 12 8 6.1631 2.0846 0.6048 13 8 7.9473 0.3708 0.6051 14 6 7.1245 1.2995 -1.7570 15 6 8.1808 2.3980 -1.8924 16 6 7.6765 3.6761 -1.2193 17 6 9.4777 1.9446 -1.2191 18 6 8.4408 2.6676 -3.3522 19 1 7.9065 2.1107 -4.1077 20 6 9.3608 3.6251 -3.7231 21 7 10.0111 4.3036 -2.8032 22 14 9.6837 3.9588 -5.5326 23 1 8.4251 4.3978 -6.1872 24 1 10.7079 5.0260 -5.6641 25 1 10.1743 2.7182 -6.1848 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6596 2.1318 -0.0006 30 1 4.1138 2.1383 0.0001 31 1 1.6600 -2.1315 -0.0004 32 1 4.4501 -2.9500 -0.8932 33 1 4.4493 -2.9496 0.8977 34 1 6.5078 -1.9318 0.8969 35 1 6.5080 -1.9327 -0.8926 36 1 7.4843 0.3891 -2.2365 37 1 6.2006 1.6221 -2.2367 38 1 7.4887 3.4809 -0.1635 39 1 8.4292 4.4587 -1.3154 40 1 6.7525 3.9992 -1.6989 41 1 9.8369 1.0341 -1.6988 42 1 10.2302 2.7271 -1.3160 43 1 9.2898 1.7493 -0.1634 44 1 10.6587 4.9771 -3.0642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295249598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:55 Heat of formation + Delta-G solvation = -45.319712 kcal Electronic energy + Delta-G solvation = -26244.292844 eV Core-core repulsion = 22674.560160 eV Total energy + Delta-G solvation = -3569.732684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46631 -37.03113 -36.69191 -36.35249 -35.47324 -32.30765 -31.72414 -31.48079 -28.96092 -26.85077 -26.40597 -25.78589 -25.27758 -22.96260 -22.38935 -20.78534 -19.55390 -18.87411 -17.55817 -16.36605 -16.12259 -16.05886 -15.18165 -15.14449 -15.08311 -14.89143 -14.55841 -13.74273 -13.65533 -13.26630 -13.14597 -12.88632 -12.70291 -12.57746 -12.40930 -12.29612 -12.18174 -12.12165 -11.78000 -11.62798 -11.46721 -11.16328 -11.10474 -11.03231 -10.79031 -10.65380 -10.49998 -10.34828 -10.27102 -10.10838 -9.72142 -9.56560 -8.79665 -8.77360 -8.44457 -7.71805 -6.07786 -4.20275 0.56373 1.38362 1.42760 2.82449 3.24738 3.30276 3.31950 3.71287 4.18817 4.23384 4.27825 4.34249 4.66708 4.85712 4.97694 5.01011 5.06041 5.16235 5.19108 5.39334 5.47338 5.51156 5.56287 5.57765 5.63962 5.75545 5.78180 5.88418 5.89997 6.18655 6.27912 6.32184 6.50495 6.60827 6.63470 6.67978 6.72306 6.82656 6.96257 7.08330 7.24616 7.43543 7.63124 7.91930 8.03324 8.26897 8.77886 9.45412 10.93592 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003902 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.847488 B = 7174.115663 C = 7718.704221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.148 4.148 5 C 0.167 3.833 6 C -0.138 4.138 7 C -0.079 4.079 8 C -0.080 4.080 9 C 0.112 3.888 10 N -0.946 5.946 11 S 2.588 3.412 12 O -0.947 6.947 13 O -0.950 6.950 14 C -0.574 4.574 15 C 0.083 3.917 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.504 4.504 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.027 0.973 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -11.469 4.711 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.170 4.170 5 C 0.069 3.931 6 C -0.143 4.143 7 C -0.097 4.097 8 C -0.118 4.118 9 C -0.012 4.012 10 N -0.766 5.766 11 S 2.690 3.310 12 O -0.937 6.937 13 O -0.940 6.940 14 C -0.708 4.708 15 C 0.081 3.919 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.046 0.954 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.906 -10.924 5.565 18.538 hybrid contribution 0.196 0.032 -1.690 1.702 sum -13.710 -10.891 3.875 17.933 Atomic orbital electron populations 1.20677 0.91115 1.02433 1.02010 1.19715 0.95910 0.92855 1.03766 1.20750 0.92913 0.97760 0.99012 1.21100 0.94488 0.96997 1.04378 1.18084 0.82503 0.95024 0.97482 1.20097 0.93725 0.93915 1.06530 1.20178 0.91603 0.97666 1.00295 1.21063 0.91141 0.96201 1.03408 1.21884 0.97920 0.78058 1.03340 1.56720 1.15426 1.20064 1.84437 1.06148 0.72488 0.72486 0.79919 1.93533 1.74365 1.50320 1.75513 1.93557 1.48757 1.76240 1.75494 1.30537 1.10410 1.10389 1.19502 1.17962 0.88143 0.87765 0.98080 1.22285 1.01659 1.01827 0.96408 1.22290 1.01553 1.01993 0.96375 1.20879 1.23054 1.20673 0.89699 0.92287 1.24931 0.95493 0.95545 0.97666 1.69783 1.26011 1.24008 1.32333 0.86574 0.78052 0.77986 0.84906 1.20211 1.21114 1.20230 0.91528 0.91914 0.91708 0.85421 0.83531 0.86092 0.89343 0.89438 0.89534 0.90005 0.86200 0.86070 0.95423 0.88481 0.94328 0.94377 0.88449 0.95488 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.02 36.00 0.36 -0.48 16 2 C -0.12 -1.35 5.88 -104.60 -0.62 -1.96 16 3 C -0.09 -1.08 9.68 -39.71 -0.38 -1.47 16 4 C -0.15 -2.28 9.37 -39.20 -0.37 -2.65 16 5 C 0.17 2.57 6.59 -83.67 -0.55 2.02 16 6 C -0.14 -1.76 6.23 -104.26 -0.65 -2.41 16 7 C -0.08 -0.87 9.70 -39.61 -0.38 -1.26 16 8 C -0.08 -0.81 6.94 -27.23 -0.19 -1.00 16 9 C 0.11 1.39 7.08 -3.63 -0.03 1.36 16 10 N -0.95 -15.03 3.40 -58.12 -0.20 -15.23 16 11 S 2.59 49.87 4.59 -107.50 -0.49 49.38 16 12 O -0.95 -19.96 12.88 -57.54 -0.74 -20.70 16 13 O -0.95 -20.12 15.18 -57.54 -0.87 -20.99 16 14 C -0.57 -11.41 5.12 37.16 0.19 -11.22 16 15 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 16 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 17 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 18 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -23.92 9.35 55.43 0.52 -23.41 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.15 2.44 6.11 -52.49 -0.32 2.12 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 37 H 0.12 2.23 8.14 -51.93 -0.42 1.81 16 38 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 39 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 43 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.25 352.89 -10.53 -41.78 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.55 Total: 4.74 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: -2.49 Total: -36.38 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.32 Total: -38.64 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.61 Total: -41.69 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.49 Total: 49.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.25 -10.53 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295249598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.541 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds