Wall clock time and date at job start Tue Mar 31 2020 13:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38304 * 120.08359 * 2 1 4 4 C 1.37830 * 120.23086 * 179.97438 * 3 2 1 5 5 C 1.39671 * 120.27920 * 359.97438 * 4 3 2 6 6 C 1.38591 * 119.02998 * 0.02562 * 5 4 3 7 7 C 1.38175 * 120.47829 * 0.02562 * 6 5 4 8 8 C 1.51224 * 108.54141 * 179.97438 * 6 5 4 9 9 C 1.53757 * 104.53252 * 359.97438 * 8 6 5 10 10 N 1.39576 * 129.31623 * 179.97438 * 5 4 3 11 11 S 1.65601 * 124.95903 * 359.97438 * 10 5 4 12 12 O 1.42099 * 104.27610 * 26.11363 * 11 10 5 13 13 O 1.42102 * 104.27841 * 153.97379 * 11 10 5 14 14 C 1.81406 * 104.44761 * 270.04353 * 11 10 5 15 15 C 1.52996 * 109.46770 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47029 * 299.99473 * 15 14 11 17 17 C 1.53002 * 109.47558 * 59.99734 * 15 14 11 18 18 C 1.50702 * 109.46965 * 179.97438 * 15 14 11 19 19 H 1.07999 * 119.99965 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00064 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00335 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00105 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.46608 * 59.99850 * 22 20 18 24 24 H 1.48495 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47025 * 300.00170 * 22 20 18 26 26 H 1.09002 * 109.47708 * 89.99779 * 1 2 3 27 27 H 1.09006 * 109.47347 * 210.00151 * 1 2 3 28 28 H 1.09003 * 109.47428 * 329.99511 * 1 2 3 29 29 H 1.08008 * 119.88180 * 359.96188 * 3 2 1 30 30 H 1.08000 * 119.85596 * 179.97438 * 4 3 2 31 31 H 1.07997 * 119.92609 * 179.97438 * 7 6 5 32 32 H 1.09005 * 110.42310 * 241.24093 * 8 6 5 33 33 H 1.08997 * 110.42549 * 118.76646 * 8 6 5 34 34 H 1.09000 * 110.29448 * 118.93144 * 9 8 6 35 35 H 1.09002 * 110.29751 * 241.06991 * 9 8 6 36 36 H 1.09002 * 109.46828 * 299.99387 * 14 11 10 37 37 H 1.08991 * 109.47045 * 59.99559 * 14 11 10 38 38 H 1.09001 * 109.47280 * 60.00776 * 16 15 14 39 39 H 1.09006 * 109.47184 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47492 * 300.00700 * 16 15 14 41 41 H 1.08998 * 109.46625 * 60.00038 * 17 15 14 42 42 H 1.08998 * 109.47057 * 179.97438 * 17 15 14 43 43 H 1.08993 * 109.46780 * 299.99982 * 17 15 14 44 44 H 0.97002 * 120.00572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1967 0.0000 4 6 3.5785 1.2003 0.0005 5 6 4.2859 -0.0041 0.0016 6 6 3.5816 -1.1977 0.0016 7 6 2.1998 -1.1961 0.0000 8 6 4.5720 -2.3405 0.0022 9 6 5.9494 -1.6572 0.0020 10 7 5.6649 -0.2198 0.0018 11 16 6.8121 0.9745 0.0001 12 8 6.1631 2.0846 0.6048 13 8 7.9473 0.3708 0.6051 14 6 7.1245 1.2995 -1.7570 15 6 8.1808 2.3980 -1.8924 16 6 7.6765 3.6761 -1.2193 17 6 9.4777 1.9446 -1.2191 18 6 8.4408 2.6676 -3.3522 19 1 7.9065 2.1107 -4.1077 20 6 9.3608 3.6251 -3.7231 21 7 10.0111 4.3036 -2.8032 22 14 9.6837 3.9588 -5.5326 23 1 8.4251 4.3978 -6.1872 24 1 10.7079 5.0260 -5.6641 25 1 10.1743 2.7182 -6.1848 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5139 29 1 1.6596 2.1318 -0.0006 30 1 4.1138 2.1383 0.0001 31 1 1.6600 -2.1315 -0.0004 32 1 4.4501 -2.9500 -0.8932 33 1 4.4493 -2.9496 0.8977 34 1 6.5078 -1.9318 0.8969 35 1 6.5080 -1.9327 -0.8926 36 1 7.4843 0.3891 -2.2365 37 1 6.2006 1.6221 -2.2367 38 1 7.4887 3.4809 -0.1635 39 1 8.4292 4.4587 -1.3154 40 1 6.7525 3.9992 -1.6989 41 1 9.8369 1.0341 -1.6988 42 1 10.2302 2.7271 -1.3160 43 1 9.2898 1.7493 -0.1634 44 1 10.6587 4.9771 -3.0642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295249598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:54 Heat of formation + Delta-G solvation = -62.878633 kcal Electronic energy + Delta-G solvation = -26245.054256 eV Core-core repulsion = 22674.560160 eV Total energy + Delta-G solvation = -3570.494096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43997 -38.42839 -38.24045 -37.81012 -37.10005 -33.69683 -33.26694 -32.37223 -29.88974 -28.49720 -27.76865 -27.32306 -27.26457 -23.90815 -23.43408 -21.69641 -21.37506 -20.22153 -18.98563 -17.98273 -17.51933 -17.38192 -16.79044 -16.51098 -16.35018 -16.09057 -15.76351 -14.98123 -14.84493 -14.63817 -14.50506 -14.42846 -13.98423 -13.93556 -13.71229 -13.36648 -13.23758 -13.14839 -13.03257 -12.91811 -12.89020 -12.85661 -12.71040 -12.59495 -12.33650 -12.25427 -12.20278 -12.06744 -11.65390 -11.64743 -11.49787 -11.12595 -10.67350 -10.45459 -9.71671 -8.73658 -8.07098 -6.26542 -0.93533 0.43554 0.44459 1.43797 1.44131 1.48395 1.51803 2.41291 2.61818 2.84566 2.93173 3.15553 3.25053 3.67509 3.87525 3.98642 3.99702 4.12193 4.17297 4.24163 4.42696 4.49917 4.54957 4.61707 4.75346 4.77935 4.84183 4.87437 4.89286 4.96231 4.99344 5.02225 5.03457 5.15237 5.29067 5.30950 5.40328 5.43492 5.53742 5.59444 5.63326 5.73887 5.90327 6.04094 6.14022 6.27803 6.77103 7.41994 8.92826 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.003902 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.847488 B = 7174.115663 C = 7718.704221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.115 4.115 3 C -0.097 4.097 4 C -0.177 4.177 5 C 0.128 3.872 6 C -0.136 4.136 7 C -0.078 4.078 8 C -0.072 4.072 9 C 0.094 3.906 10 N -0.946 5.946 11 S 2.609 3.391 12 O -0.973 6.973 13 O -0.974 6.974 14 C -0.577 4.577 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.521 4.521 19 H 0.062 0.938 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.270 1.270 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 -14.055 3.963 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.116 4.116 4 C -0.198 4.198 5 C 0.031 3.969 6 C -0.140 4.140 7 C -0.096 4.096 8 C -0.110 4.110 9 C -0.029 4.029 10 N -0.770 5.770 11 S 2.710 3.290 12 O -0.963 6.963 13 O -0.964 6.964 14 C -0.710 4.710 15 C 0.069 3.931 16 C -0.217 4.217 17 C -0.218 4.218 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.196 1.196 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.285 -13.508 4.810 21.698 hybrid contribution 0.810 0.796 -1.407 1.808 sum -15.476 -12.711 3.403 20.314 Atomic orbital electron populations 1.20752 0.88508 1.03731 1.03098 1.20163 0.97771 0.92222 1.01498 1.21000 0.91999 0.99471 0.99107 1.21127 0.95824 0.96376 1.06502 1.18363 0.82235 0.96184 1.00101 1.20494 0.94664 0.93698 1.05166 1.20620 0.91089 0.99093 0.98840 1.21169 0.88449 0.95446 1.05897 1.22320 1.00009 0.76202 1.04382 1.56283 1.15245 1.20762 1.84729 1.05182 0.72297 0.72404 0.79136 1.93496 1.74791 1.52217 1.75836 1.93514 1.50400 1.76739 1.75749 1.30449 1.09619 1.09818 1.21146 1.17942 0.89141 0.88831 0.97195 1.22205 1.00892 1.01727 0.96873 1.22214 1.01390 1.01348 0.96823 1.21214 1.23140 1.20823 0.90823 0.91968 1.25675 0.95434 0.95485 1.01389 1.69923 1.26338 1.24314 1.33958 0.85643 0.77875 0.77875 0.80441 1.19761 1.21093 1.19558 0.90386 0.90062 0.91073 0.84023 0.86138 0.82563 0.86567 0.87061 0.89361 0.88359 0.84320 0.85085 0.95020 0.90714 0.94195 0.93836 0.90687 0.95104 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.02 71.23 0.71 -0.55 16 2 C -0.12 -2.25 5.88 -19.85 -0.12 -2.36 16 3 C -0.10 -2.38 9.68 22.19 0.21 -2.17 16 4 C -0.18 -5.55 9.37 22.52 0.21 -5.34 16 5 C 0.13 3.86 6.59 38.34 0.25 4.11 16 6 C -0.14 -3.09 6.23 -19.63 -0.12 -3.22 16 7 C -0.08 -1.45 9.70 22.25 0.22 -1.23 16 8 C -0.07 -1.19 6.94 30.27 0.21 -0.98 16 9 C 0.09 2.15 7.08 86.63 0.61 2.76 16 10 N -0.95 -29.64 3.40 -337.78 -1.15 -30.79 16 11 S 2.61 102.20 4.59 -56.49 -0.26 101.94 16 12 O -0.97 -42.68 12.88 -127.65 -1.64 -44.33 16 13 O -0.97 -41.74 15.18 -127.65 -1.94 -43.68 16 14 C -0.58 -23.05 5.12 71.98 0.37 -22.68 16 15 C 0.07 3.50 0.52 -52.93 -0.03 3.47 16 16 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 17 C -0.16 -8.02 7.77 71.98 0.56 -7.46 16 18 C -0.52 -27.41 8.01 25.60 0.21 -27.21 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.02 1.06 5.15 84.65 0.44 1.49 16 21 N -0.91 -50.28 9.35 21.45 0.20 -50.08 16 22 Si 0.96 42.13 29.54 68.60 2.03 44.15 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 28 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.12 4.30 6.11 -2.91 -0.02 4.29 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.31 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 37 H 0.13 4.89 8.14 -2.39 -0.02 4.87 16 38 H 0.03 1.53 5.47 -2.39 -0.01 1.51 16 39 H 0.07 4.09 6.07 -2.38 -0.01 4.08 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 43 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 44 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -69.10 352.89 2.53 -66.58 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.99 Total: 25.06 kcal Atomic # 6 Polarization: -73.14 SS G_CDS: 4.29 Total: -68.85 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -0.95 Total: -80.87 kcal Atomic # 8 Polarization: -84.42 SS G_CDS: -3.58 Total: -88.00 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 102.20 SS G_CDS: -0.26 Total: 101.94 kcal Total: -69.10 2.53 -66.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295249598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.698 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds