Wall clock time and date at job start Tue Mar 31 2020 13:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37871 * 119.85962 * 2 1 4 4 C 1.38256 * 120.23190 * 179.97438 * 3 2 1 5 5 C 1.38277 * 119.83412 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.15214 * 359.97438 * 5 4 3 7 7 C 1.38643 * 120.47180 * 359.73036 * 6 5 4 8 8 N 1.39579 * 111.64164 * 179.78882 * 7 6 5 9 9 S 1.65594 * 124.95404 * 180.14640 * 8 7 6 10 10 O 1.42104 * 104.27939 * 40.88432 * 9 8 7 11 11 O 1.42101 * 104.27987 * 168.73967 * 9 8 7 12 12 C 1.81394 * 104.45203 * 284.81014 * 9 8 7 13 13 C 1.53001 * 109.47447 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.46927 * 299.99606 * 13 12 9 15 15 C 1.52993 * 109.47167 * 59.99904 * 13 12 9 16 16 C 1.50703 * 109.47029 * 180.02562 * 13 12 9 17 17 H 1.07995 * 119.99983 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99539 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99773 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47119 * 119.99552 * 20 18 16 23 23 H 1.48497 * 109.47346 * 239.99366 * 20 18 16 24 24 C 1.46538 * 110.08845 * 0.43614 * 8 7 6 25 25 C 1.51217 * 130.99361 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47001 * 95.42398 * 1 2 3 27 27 H 1.08997 * 109.46996 * 335.42112 * 1 2 3 28 28 H 1.08996 * 109.47079 * 215.41924 * 1 2 3 29 29 H 1.07998 * 119.88323 * 359.96908 * 3 2 1 30 30 H 1.08003 * 120.08354 * 180.02562 * 4 3 2 31 31 H 1.08002 * 119.92427 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47426 * 300.00286 * 12 9 8 33 33 H 1.09006 * 109.47397 * 59.99990 * 12 9 8 34 34 H 1.09005 * 109.46875 * 59.99920 * 14 13 12 35 35 H 1.09002 * 109.46946 * 179.97438 * 14 13 12 36 36 H 1.08994 * 109.47400 * 300.00240 * 14 13 12 37 37 H 1.08998 * 109.47155 * 60.00285 * 15 13 12 38 38 H 1.09004 * 109.47041 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.47280 * 299.99934 * 15 13 12 40 40 H 0.97002 * 120.00326 * 180.02562 * 19 18 16 41 41 H 1.09004 * 110.29706 * 240.81765 * 24 8 7 42 42 H 1.08997 * 110.38009 * 118.72453 * 24 8 7 43 43 H 1.08997 * 110.42133 * 298.77351 * 25 6 5 44 44 H 1.09001 * 110.42037 * 61.24064 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1957 0.0000 4 6 3.5760 1.2047 0.0005 5 6 4.2717 0.0096 0.0016 6 6 3.5885 -1.1909 0.0027 7 6 2.2022 -1.2110 0.0083 8 7 1.7063 -2.5157 0.0037 9 16 0.1006 -2.9203 0.0048 10 8 -0.4953 -1.9925 -0.8916 11 8 0.0902 -4.3144 -0.2700 12 6 -0.4452 -2.6026 1.7053 13 6 -1.9311 -2.9430 1.8361 14 6 -2.7401 -2.0747 0.8704 15 6 -2.1478 -4.4193 1.4984 16 6 -2.3845 -2.6784 3.2488 17 1 -1.6829 -2.3054 3.9802 18 6 -3.6948 -2.9138 3.6076 19 7 -4.5490 -3.3686 2.7171 20 14 -4.2567 -2.5866 5.3588 21 1 -3.1123 -2.0830 6.1599 22 1 -5.3401 -1.5708 5.3494 23 1 -4.7645 -3.8463 5.9593 24 6 2.8139 -3.4751 0.0047 25 6 4.0899 -2.6175 0.0045 26 1 -0.3633 -0.0971 -1.0231 27 1 -0.3633 0.9345 0.4274 28 1 -0.3633 -0.8374 0.5956 29 1 1.6492 2.1285 -0.0005 30 1 4.1113 2.1427 0.0010 31 1 5.3517 0.0150 0.0016 32 1 0.1309 -3.2214 2.3934 33 1 -0.2904 -1.5508 1.9461 34 1 -2.4121 -2.2655 -0.1515 35 1 -3.7986 -2.3175 0.9633 36 1 -2.5857 -1.0229 1.1110 37 1 -1.5715 -5.0378 2.1864 38 1 -3.2065 -4.6617 1.5912 39 1 -1.8200 -4.6102 0.4765 40 1 -5.4710 -3.5338 2.9695 41 1 2.7760 -4.0973 -0.8895 42 1 2.7766 -4.0970 0.8991 43 1 4.6802 -2.8143 -0.8904 44 1 4.6794 -2.8123 0.9004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296827978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:34 Heat of formation + Delta-G solvation = -15.935073 kcal Electronic energy + Delta-G solvation = -27082.422198 eV Core-core repulsion = 23513.963728 eV Total energy + Delta-G solvation = -3568.458470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54901 -37.27040 -36.47733 -36.36124 -35.47017 -33.26654 -31.76316 -30.08976 -29.19619 -27.35041 -26.19369 -25.72325 -25.28392 -22.88951 -22.16460 -21.08866 -19.57967 -18.48984 -17.76927 -16.43364 -16.14799 -16.08305 -15.50690 -15.22116 -15.04207 -14.94667 -14.51692 -13.75308 -13.52719 -13.32054 -13.03001 -12.87255 -12.61924 -12.59050 -12.40013 -12.29447 -12.10722 -11.79528 -11.67293 -11.48022 -11.17727 -11.12952 -11.01363 -10.82197 -10.77466 -10.54298 -10.38299 -10.33642 -10.27117 -9.98128 -9.65721 -9.58674 -8.77634 -8.52901 -8.45120 -7.77018 -6.08487 -4.20612 0.55254 1.37598 1.46612 2.82729 3.22360 3.31069 3.33890 3.75302 4.12025 4.25151 4.32503 4.36556 4.68760 4.88216 4.98589 4.99507 5.13901 5.16859 5.30645 5.37196 5.51342 5.55602 5.57824 5.69352 5.76915 5.78339 5.91402 6.07683 6.17390 6.28939 6.36558 6.48509 6.57370 6.61597 6.66887 6.71625 6.75185 6.82070 6.95612 7.12115 7.24553 7.42847 7.63113 7.91450 8.03064 8.26372 8.78093 9.45239 10.92934 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.004561 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.189042 B = 6137.463076 C = 6674.137471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.086 4.086 6 C -0.137 4.137 7 C 0.167 3.833 8 N -0.943 5.943 9 S 2.579 3.421 10 O -0.941 6.941 11 O -0.954 6.954 12 C -0.581 4.581 13 C 0.084 3.916 14 C -0.165 4.165 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.116 3.884 25 C -0.081 4.081 26 H 0.110 0.890 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.028 0.972 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.055 5.188 -4.784 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 C -0.107 4.107 4 C -0.166 4.166 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.069 3.931 8 N -0.763 5.763 9 S 2.682 3.318 10 O -0.931 6.931 11 O -0.944 6.944 12 C -0.714 4.714 13 C 0.082 3.918 14 C -0.223 4.223 15 C -0.222 4.222 16 C -0.541 4.541 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.521 5.521 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.009 4.009 25 C -0.119 4.119 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.286 4.615 -5.606 16.923 hybrid contribution -0.147 0.287 1.653 1.685 sum 15.139 4.902 -3.953 16.397 Atomic orbital electron populations 1.21800 0.89449 1.01975 1.05304 1.19633 0.96935 0.90523 1.04225 1.20732 0.94089 0.96576 0.99290 1.20930 0.94093 0.97569 1.04002 1.20310 0.99351 0.90615 1.00189 1.20091 0.92500 0.95057 1.06487 1.17939 0.93083 0.84070 0.98004 1.56703 1.25145 1.10150 1.84333 1.06370 0.71221 0.74035 0.80219 1.93744 1.73963 1.62257 1.63159 1.93528 1.84200 1.31624 1.85087 1.30699 1.11111 1.10847 1.18788 1.17963 0.82815 0.93175 0.97880 1.22316 1.05639 0.98813 0.95485 1.22289 1.05601 0.96908 0.97424 1.20951 0.95109 1.44428 0.93615 0.92183 1.24927 0.96547 0.94715 0.97449 1.69803 1.04304 1.44702 1.33291 0.86469 0.78721 0.77985 0.84436 1.19805 1.20869 1.20913 1.21837 0.84434 0.91287 1.03314 1.21073 0.96953 0.90443 1.03410 0.87178 0.92024 0.92141 0.85379 0.85823 0.86100 0.86135 0.85289 0.95346 0.88511 0.94155 0.94411 0.88433 0.95511 0.92724 0.89826 0.89968 0.89429 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.83 36.01 0.28 -1.83 16 2 C -0.11 -1.67 5.90 -104.23 -0.62 -2.29 16 3 C -0.09 -1.11 9.64 -39.71 -0.38 -1.49 16 4 C -0.15 -1.59 10.06 -39.56 -0.40 -1.99 16 5 C -0.09 -0.94 10.04 -39.61 -0.40 -1.34 16 6 C -0.14 -1.75 6.23 -104.26 -0.65 -2.40 16 7 C 0.17 2.58 6.55 -83.66 -0.55 2.04 16 8 N -0.94 -15.18 3.38 -58.11 -0.20 -15.38 16 9 S 2.58 49.72 3.95 -107.50 -0.42 49.30 16 10 O -0.94 -19.25 10.33 -57.54 -0.59 -19.84 16 11 O -0.95 -20.30 15.01 -57.54 -0.86 -21.16 16 12 C -0.58 -11.60 4.46 37.16 0.17 -11.43 16 13 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 14 C -0.16 -3.93 7.29 37.16 0.27 -3.66 16 15 C -0.16 -4.02 7.78 37.15 0.29 -3.73 16 16 C -0.50 -13.00 8.01 -34.44 -0.28 -13.28 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -23.73 9.35 55.43 0.52 -23.21 16 20 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.12 1.47 6.96 -3.63 -0.03 1.44 16 25 C -0.08 -0.83 6.94 -27.24 -0.19 -1.02 16 26 H 0.11 1.93 6.51 -51.93 -0.34 1.59 16 27 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 28 H 0.06 1.08 1.22 -37.61 -0.05 1.04 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.12 2.22 8.14 -51.92 -0.42 1.79 16 33 H 0.13 2.41 6.20 -51.92 -0.32 2.09 16 34 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 35 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.04 0.90 7.88 -51.93 -0.41 0.50 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 39 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -30.57 338.21 -10.21 -40.78 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.08 Total: 6.43 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: -2.65 Total: -37.42 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.32 Total: -38.58 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.46 Total: -41.01 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 49.72 SS G_CDS: -0.42 Total: 49.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.57 -10.21 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296827978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.844 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds