Wall clock time and date at job start Tue Mar 31 2020 13:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37871 * 119.85962 * 2 1 4 4 C 1.38256 * 120.23190 * 179.97438 * 3 2 1 5 5 C 1.38277 * 119.83412 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.15214 * 359.97438 * 5 4 3 7 7 C 1.38643 * 120.47180 * 359.73036 * 6 5 4 8 8 N 1.39579 * 111.64164 * 179.78882 * 7 6 5 9 9 S 1.65594 * 124.95404 * 180.14640 * 8 7 6 10 10 O 1.42104 * 104.27939 * 40.88432 * 9 8 7 11 11 O 1.42101 * 104.27987 * 168.73967 * 9 8 7 12 12 C 1.81394 * 104.45203 * 284.81014 * 9 8 7 13 13 C 1.53001 * 109.47447 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.46927 * 299.99606 * 13 12 9 15 15 C 1.52993 * 109.47167 * 59.99904 * 13 12 9 16 16 C 1.50703 * 109.47029 * 180.02562 * 13 12 9 17 17 H 1.07995 * 119.99983 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99539 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99773 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47119 * 119.99552 * 20 18 16 23 23 H 1.48497 * 109.47346 * 239.99366 * 20 18 16 24 24 C 1.46538 * 110.08845 * 0.43614 * 8 7 6 25 25 C 1.51217 * 130.99361 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47001 * 95.42398 * 1 2 3 27 27 H 1.08997 * 109.46996 * 335.42112 * 1 2 3 28 28 H 1.08996 * 109.47079 * 215.41924 * 1 2 3 29 29 H 1.07998 * 119.88323 * 359.96908 * 3 2 1 30 30 H 1.08003 * 120.08354 * 180.02562 * 4 3 2 31 31 H 1.08002 * 119.92427 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47426 * 300.00286 * 12 9 8 33 33 H 1.09006 * 109.47397 * 59.99990 * 12 9 8 34 34 H 1.09005 * 109.46875 * 59.99920 * 14 13 12 35 35 H 1.09002 * 109.46946 * 179.97438 * 14 13 12 36 36 H 1.08994 * 109.47400 * 300.00240 * 14 13 12 37 37 H 1.08998 * 109.47155 * 60.00285 * 15 13 12 38 38 H 1.09004 * 109.47041 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.47280 * 299.99934 * 15 13 12 40 40 H 0.97002 * 120.00326 * 180.02562 * 19 18 16 41 41 H 1.09004 * 110.29706 * 240.81765 * 24 8 7 42 42 H 1.08997 * 110.38009 * 118.72453 * 24 8 7 43 43 H 1.08997 * 110.42133 * 298.77351 * 25 6 5 44 44 H 1.09001 * 110.42037 * 61.24064 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1957 0.0000 4 6 3.5760 1.2047 0.0005 5 6 4.2717 0.0096 0.0016 6 6 3.5885 -1.1909 0.0027 7 6 2.2022 -1.2110 0.0083 8 7 1.7063 -2.5157 0.0037 9 16 0.1006 -2.9203 0.0048 10 8 -0.4953 -1.9925 -0.8916 11 8 0.0902 -4.3144 -0.2700 12 6 -0.4452 -2.6026 1.7053 13 6 -1.9311 -2.9430 1.8361 14 6 -2.7401 -2.0747 0.8704 15 6 -2.1478 -4.4193 1.4984 16 6 -2.3845 -2.6784 3.2488 17 1 -1.6829 -2.3054 3.9802 18 6 -3.6948 -2.9138 3.6076 19 7 -4.5490 -3.3686 2.7171 20 14 -4.2567 -2.5866 5.3588 21 1 -3.1123 -2.0830 6.1599 22 1 -5.3401 -1.5708 5.3494 23 1 -4.7645 -3.8463 5.9593 24 6 2.8139 -3.4751 0.0047 25 6 4.0899 -2.6175 0.0045 26 1 -0.3633 -0.0971 -1.0231 27 1 -0.3633 0.9345 0.4274 28 1 -0.3633 -0.8374 0.5956 29 1 1.6492 2.1285 -0.0005 30 1 4.1113 2.1427 0.0010 31 1 5.3517 0.0150 0.0016 32 1 0.1309 -3.2214 2.3934 33 1 -0.2904 -1.5508 1.9461 34 1 -2.4121 -2.2655 -0.1515 35 1 -3.7986 -2.3175 0.9633 36 1 -2.5857 -1.0229 1.1110 37 1 -1.5715 -5.0378 2.1864 38 1 -3.2065 -4.6617 1.5912 39 1 -1.8200 -4.6102 0.4765 40 1 -5.4710 -3.5338 2.9695 41 1 2.7760 -4.0973 -0.8895 42 1 2.7766 -4.0970 0.8991 43 1 4.6802 -2.8143 -0.8904 44 1 4.6794 -2.8123 0.9004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296827978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:33 Heat of formation + Delta-G solvation = -32.976223 kcal Electronic energy + Delta-G solvation = -27083.161158 eV Core-core repulsion = 23513.963728 eV Total energy + Delta-G solvation = -3569.197430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52988 -38.76580 -38.25708 -37.44251 -37.07922 -34.33355 -33.68697 -31.12153 -30.12839 -28.86358 -27.83065 -27.37750 -27.22909 -23.84268 -23.22473 -22.07979 -21.39904 -19.76295 -19.18206 -18.00603 -17.66870 -17.42068 -16.81191 -16.58749 -16.45585 -16.09373 -15.77793 -15.16734 -14.94077 -14.73347 -14.51272 -14.34838 -14.13449 -13.84495 -13.58572 -13.52403 -13.30910 -13.15797 -12.98806 -12.95412 -12.79188 -12.76118 -12.55479 -12.41913 -12.25378 -12.14807 -12.05949 -11.76154 -11.67036 -11.56228 -11.34318 -11.27626 -10.65386 -10.45265 -9.47250 -8.81197 -8.06827 -6.25654 -0.93115 0.44907 0.50107 1.41234 1.44401 1.49760 1.54111 2.41479 2.63606 2.84231 3.01230 3.16259 3.25146 3.67399 3.83649 3.95358 4.00523 4.04364 4.15587 4.23014 4.42083 4.47356 4.51818 4.62177 4.70363 4.78379 4.78953 4.84138 4.87381 4.90357 5.00205 5.01945 5.04603 5.19941 5.31014 5.34933 5.45583 5.52360 5.57076 5.60633 5.65489 5.68841 5.91813 6.05226 6.16909 6.28912 6.78119 7.42833 8.93412 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.004561 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.189042 B = 6137.463076 C = 6674.137471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C -0.096 4.096 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.138 4.138 7 C 0.128 3.872 8 N -0.944 5.944 9 S 2.598 3.402 10 O -0.960 6.960 11 O -0.980 6.980 12 C -0.583 4.583 13 C 0.074 3.926 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.097 3.903 25 C -0.072 4.072 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.295 6.506 -4.146 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.140 4.140 3 C -0.115 4.115 4 C -0.157 4.157 5 C -0.101 4.101 6 C -0.143 4.143 7 C 0.031 3.969 8 N -0.768 5.768 9 S 2.701 3.299 10 O -0.950 6.950 11 O -0.971 6.971 12 C -0.716 4.716 13 C 0.072 3.928 14 C -0.215 4.215 15 C -0.218 4.218 16 C -0.556 4.556 17 H 0.078 0.922 18 C -0.179 4.179 19 N -0.545 5.545 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.026 4.026 25 C -0.110 4.110 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.163 0.837 30 H 0.176 0.824 31 H 0.175 0.825 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.129 0.871 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.523 5.935 -4.960 20.073 hybrid contribution -1.042 -0.049 1.400 1.746 sum 17.480 5.887 -3.560 18.785 Atomic orbital electron populations 1.21683 0.91225 1.01865 1.03851 1.19739 0.96086 0.91860 1.06303 1.21029 0.95285 0.96237 0.98929 1.21386 0.93396 0.99199 1.01703 1.20778 1.01192 0.89733 0.98363 1.20498 0.91370 0.96953 1.05474 1.18283 0.94601 0.83487 1.00497 1.56295 1.24374 1.11518 1.84633 1.05436 0.71997 0.73076 0.79436 1.93734 1.75361 1.62463 1.63400 1.93482 1.85220 1.33113 1.85235 1.30607 1.08684 1.11753 1.20544 1.17920 0.85359 0.92508 0.97000 1.22207 1.04160 0.99145 0.96006 1.22218 1.04106 0.97752 0.97733 1.21247 0.95391 1.44365 0.94646 0.92157 1.25644 0.96761 0.94654 1.00816 1.69935 1.04442 1.45285 1.34807 0.85555 0.78271 0.77696 0.80410 1.19150 1.20717 1.20807 1.22249 0.84715 0.91578 1.04076 1.21164 0.95816 0.88179 1.05842 0.89137 0.90712 0.93884 0.83726 0.82427 0.82489 0.84940 0.84340 0.94883 0.90893 0.93712 0.94144 0.90624 0.95175 0.92781 0.89680 0.88867 0.87055 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.83 71.24 0.56 -3.77 16 2 C -0.14 -4.06 5.90 -19.61 -0.12 -4.18 16 3 C -0.10 -2.20 9.64 22.19 0.21 -1.98 16 4 C -0.14 -2.43 10.06 22.28 0.22 -2.21 16 5 C -0.08 -1.44 10.04 22.25 0.22 -1.21 16 6 C -0.14 -3.11 6.23 -19.63 -0.12 -3.23 16 7 C 0.13 3.80 6.55 38.34 0.25 4.05 16 8 N -0.94 -29.88 3.38 -337.78 -1.14 -31.02 16 9 S 2.60 101.86 3.95 -56.49 -0.22 101.64 16 10 O -0.96 -40.55 10.33 -127.65 -1.32 -41.87 16 11 O -0.98 -42.45 15.01 -127.65 -1.92 -44.37 16 12 C -0.58 -23.58 4.46 71.98 0.32 -23.26 16 13 C 0.07 3.63 0.52 -52.93 -0.03 3.61 16 14 C -0.16 -7.78 7.29 71.98 0.52 -7.26 16 15 C -0.16 -8.07 7.78 71.98 0.56 -7.51 16 16 C -0.52 -27.13 8.01 25.60 0.21 -26.92 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 18 C 0.02 1.11 5.15 84.65 0.44 1.54 16 19 N -0.91 -49.91 9.35 21.45 0.20 -49.71 16 20 Si 0.95 42.12 29.54 68.60 2.03 44.14 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.10 2.31 6.96 86.62 0.60 2.91 16 25 C -0.07 -1.22 6.94 30.26 0.21 -1.01 16 26 H 0.09 3.32 6.51 -2.39 -0.02 3.30 16 27 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 28 H 0.04 1.57 1.22 -11.49 -0.01 1.56 16 29 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.13 4.89 8.14 -2.39 -0.02 4.87 16 33 H 0.14 5.27 6.20 -2.39 -0.01 5.26 16 34 H 0.03 1.55 5.47 -2.38 -0.01 1.54 16 35 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 36 H 0.04 2.08 7.88 -2.39 -0.02 2.07 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 4.12 6.07 -2.38 -0.01 4.10 16 39 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 40 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.55 338.21 2.70 -64.86 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.00 Total: 26.76 kcal Atomic # 6 Polarization: -74.50 SS G_CDS: 4.06 Total: -70.43 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -0.94 Total: -80.73 kcal Atomic # 8 Polarization: -83.00 SS G_CDS: -3.23 Total: -86.23 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 101.86 SS G_CDS: -0.22 Total: 101.64 kcal Total: -67.55 2.70 -64.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296827978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.881 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds