Wall clock time and date at job start Tue Mar 31 2020 14:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 N 1.46497 * 109.47205 * 124.99794 * 3 2 1 5 5 C 1.46500 * 120.00194 * 275.00165 * 4 3 2 6 6 C 1.50690 * 109.47313 * 274.99681 * 5 4 3 7 7 H 1.08010 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00506 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99745 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00508 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47235 * 90.00050 * 10 8 6 12 12 H 1.48498 * 109.47464 * 210.00323 * 10 8 6 13 13 H 1.48504 * 109.46928 * 329.99923 * 10 8 6 14 14 S 1.65605 * 119.99875 * 94.99961 * 4 3 2 15 15 O 1.42095 * 106.40392 * 203.54161 * 14 4 3 16 16 O 1.42099 * 106.40218 * 336.46484 * 14 4 3 17 17 C 1.76206 * 107.21719 * 90.00240 * 14 4 3 18 18 C 1.38230 * 120.00076 * 97.22795 * 17 14 4 19 19 C 1.50698 * 119.99865 * 359.97438 * 18 17 14 20 20 C 1.38235 * 119.99966 * 179.78550 * 18 17 14 21 21 C 1.38236 * 119.99767 * 0.44904 * 20 18 17 22 22 C 1.50701 * 119.99749 * 179.83246 * 21 20 18 23 23 C 1.38229 * 120.00338 * 359.80592 * 21 20 18 24 24 C 1.38237 * 119.99781 * 277.50687 * 17 14 4 25 25 C 1.50703 * 120.00137 * 359.97384 * 24 17 14 26 26 H 1.08002 * 120.00078 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00487 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00078 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47085 * 5.00486 * 3 2 1 30 30 H 1.08993 * 109.47371 * 245.00179 * 3 2 1 31 31 H 1.09000 * 109.46866 * 35.00105 * 5 4 3 32 32 H 1.09004 * 109.46954 * 154.99688 * 5 4 3 33 33 H 0.97003 * 120.00442 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47320 * 82.88409 * 19 18 17 35 35 H 1.08999 * 109.47421 * 202.88084 * 19 18 17 36 36 H 1.08994 * 109.47573 * 322.88231 * 19 18 17 37 37 H 1.07998 * 119.99873 * 180.27325 * 20 18 17 38 38 H 1.09001 * 109.47139 * 269.97563 * 22 21 20 39 39 H 1.08994 * 109.47172 * 29.97437 * 22 21 20 40 40 H 1.09000 * 109.47349 * 149.97273 * 22 21 20 41 41 H 1.07999 * 120.00501 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46860 * 82.37666 * 25 24 17 43 43 H 1.09001 * 109.47128 * 202.37525 * 25 24 17 44 44 H 1.09000 * 109.47468 * 322.37397 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9548 3.8414 1.7040 8 6 2.2090 3.9029 3.7031 9 7 1.7756 3.2006 4.7270 10 14 2.2960 5.7653 3.8178 11 1 1.0111 6.3502 3.3572 12 1 2.5443 6.1635 5.2267 13 1 3.4019 6.2629 2.9607 14 16 4.5713 0.8758 0.9173 15 8 5.0503 0.4763 2.1940 16 8 4.5923 0.0262 -0.2215 17 6 5.4769 2.3215 0.4762 18 6 6.1760 3.0208 1.4422 19 6 6.1631 2.5469 2.8727 20 6 6.8900 4.1524 1.0954 21 6 6.8975 4.5901 -0.2158 22 6 7.6729 5.8260 -0.5933 23 6 6.1941 3.8939 -1.1809 24 6 5.4836 2.7597 -0.8348 25 6 4.7168 2.0006 -1.8870 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4026 -0.9313 31 1 1.4983 1.4371 2.5982 32 1 3.1613 1.3203 3.2221 33 1 1.5007 3.6497 5.5417 34 1 6.9091 1.7629 3.0026 35 1 6.3946 3.3818 3.5342 36 1 5.1763 2.1533 3.1163 37 1 7.4398 4.6962 1.8493 38 1 7.0307 6.7014 -0.4966 39 1 8.5328 5.9314 0.0680 40 1 8.0159 5.7390 -1.6242 41 1 6.2002 4.2356 -2.2054 42 1 3.6690 2.2996 -1.8594 43 1 5.1322 2.2223 -2.8700 44 1 4.7947 0.9310 -1.6925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298707199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:57 Heat of formation + Delta-G solvation = -23.407037 kcal Electronic energy + Delta-G solvation = -27036.103003 eV Core-core repulsion = 23467.320524 eV Total energy + Delta-G solvation = -3568.782479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.40051 -37.09285 -36.36952 -35.32342 -33.50559 -33.22747 -33.04532 -31.89089 -27.82918 -27.53416 -26.82742 -26.33817 -24.89645 -22.30568 -21.06885 -20.61871 -19.69444 -18.43294 -17.12802 -16.82897 -16.32333 -16.10724 -15.39442 -14.63110 -14.52780 -14.42007 -14.05637 -13.82555 -13.69157 -13.16819 -13.09257 -12.93675 -12.78674 -12.56693 -12.46088 -12.19156 -12.13098 -11.98798 -11.84782 -11.55236 -11.32293 -11.18406 -11.11041 -10.87998 -10.85637 -10.67407 -10.50313 -10.19721 -10.05921 -9.82853 -9.78986 -9.04138 -8.71145 -8.50095 -8.26829 -8.07527 -6.11981 -4.17861 0.98141 1.25949 1.63588 2.63886 3.23518 3.31188 3.34328 3.57709 3.85804 4.34461 4.36626 4.77182 4.87001 4.98832 5.06916 5.22350 5.27807 5.38030 5.43636 5.47095 5.54722 5.60309 5.62616 5.72845 5.78194 5.88456 5.98016 6.13628 6.15298 6.17782 6.29319 6.33920 6.42688 6.53300 6.60957 6.69951 6.74543 6.97397 7.01303 7.07362 7.23884 7.34971 7.43661 7.60041 7.85538 8.13639 8.87496 9.48411 10.95855 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.007931 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.245952 B = 3529.535081 C = 5231.004392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.147 3.853 4 N -0.976 5.976 5 C 0.244 3.756 6 C -0.538 4.538 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.887 3.113 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 S 2.689 3.311 15 O -0.955 6.955 16 O -0.976 6.976 17 C -0.678 4.678 18 C 0.052 3.948 19 C -0.144 4.144 20 C -0.159 4.159 21 C -0.032 4.032 22 C -0.118 4.118 23 C -0.163 4.163 24 C 0.027 3.973 25 C -0.190 4.190 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 0.346 -10.808 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.814 5.814 5 C 0.122 3.878 6 C -0.577 4.577 7 H 0.080 0.920 8 C -0.135 4.135 9 N -0.527 5.527 10 Si 0.715 3.285 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 S 2.781 3.219 15 O -0.945 6.945 16 O -0.966 6.966 17 C -0.765 4.765 18 C 0.050 3.950 19 C -0.201 4.201 20 C -0.178 4.178 21 C -0.032 4.032 22 C -0.175 4.175 23 C -0.182 4.182 24 C 0.026 3.974 25 C -0.246 4.246 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.485 -0.458 -10.489 12.340 hybrid contribution 0.037 2.178 0.022 2.179 sum 6.522 1.720 -10.467 12.452 Atomic orbital electron populations 1.23777 0.95809 1.01576 1.01356 1.23443 0.96318 0.99269 0.99010 1.20445 0.93331 0.95619 0.88450 1.57366 1.23627 1.82704 1.17727 1.19282 0.97219 0.94878 0.76391 1.21535 1.44490 0.91915 0.99769 0.92029 1.24883 0.94975 0.98122 0.95523 1.69925 1.43124 1.35486 1.04128 0.86663 0.78541 0.85916 0.77408 1.20624 1.21059 1.19757 1.01848 0.72959 0.74134 0.72941 1.93567 1.79817 1.81186 1.39970 1.93308 1.87139 1.64784 1.51398 1.30614 1.19591 1.25800 1.00494 1.19649 0.88890 0.91391 0.95062 1.21483 1.07081 1.01186 0.90305 1.20989 1.02910 0.98077 0.95788 1.20082 0.94506 0.95063 0.93569 1.20873 0.99459 0.95219 1.01934 1.20872 1.01384 0.96772 0.99149 1.19479 0.92523 0.93084 0.92311 1.22139 0.99685 1.05610 0.97189 0.88426 0.88868 0.87426 0.89519 0.90147 0.93914 0.92899 0.92599 0.90070 0.91772 0.86591 0.85736 0.90737 0.91329 0.91432 0.85971 0.90078 0.91055 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.56 9.84 -36.03 -0.35 -2.92 16 3 C 0.15 2.54 5.78 -5.19 -0.03 2.51 16 4 N -0.98 -19.82 2.75 -116.95 -0.32 -20.14 16 5 C 0.24 5.88 5.03 -5.20 -0.03 5.86 16 6 C -0.54 -13.83 9.23 -34.45 -0.32 -14.15 16 7 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 10 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 S 2.69 53.53 5.08 -107.50 -0.55 52.99 16 15 O -0.96 -21.07 12.45 -57.17 -0.71 -21.78 16 16 O -0.98 -18.82 13.27 -57.17 -0.76 -19.58 16 17 C -0.68 -12.88 5.96 -39.58 -0.24 -13.12 16 18 C 0.05 0.97 5.88 -104.63 -0.62 0.36 16 19 C -0.14 -2.78 8.33 36.00 0.30 -2.48 16 20 C -0.16 -2.63 9.33 -39.58 -0.37 -3.00 16 21 C -0.03 -0.47 5.88 -104.63 -0.62 -1.09 16 22 C -0.12 -1.28 10.01 36.01 0.36 -0.92 16 23 C -0.16 -2.45 9.33 -39.58 -0.37 -2.82 16 24 C 0.03 0.46 5.87 -104.62 -0.61 -0.15 16 25 C -0.19 -2.75 8.41 36.01 0.30 -2.45 16 26 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 27 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.50 7.76 -51.93 -0.40 1.09 16 30 H 0.08 1.22 4.22 -51.93 -0.22 1.01 16 31 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.05 1.38 6.33 -51.93 -0.33 1.05 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 35 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.12 2.59 4.63 -51.93 -0.24 2.35 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.12 1.48 8.05 -52.49 -0.42 1.06 16 42 H 0.08 1.09 5.98 -51.93 -0.31 0.78 16 43 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 44 H 0.14 2.13 4.52 -52.97 -0.24 1.90 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -29.87 362.35 -9.74 -39.62 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.32 Total: 6.72 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -2.27 Total: -34.89 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.41 Total: -44.24 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.47 Total: -41.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.55 Total: 52.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.87 -9.74 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298707199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.210 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds