Wall clock time and date at job start Tue Mar 31 2020 14:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 N 1.46497 * 109.47205 * 124.99794 * 3 2 1 5 5 C 1.46500 * 120.00194 * 275.00165 * 4 3 2 6 6 C 1.50690 * 109.47313 * 274.99681 * 5 4 3 7 7 H 1.08010 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00506 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99745 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00508 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47235 * 90.00050 * 10 8 6 12 12 H 1.48498 * 109.47464 * 210.00323 * 10 8 6 13 13 H 1.48504 * 109.46928 * 329.99923 * 10 8 6 14 14 S 1.65605 * 119.99875 * 94.99961 * 4 3 2 15 15 O 1.42095 * 106.40392 * 203.54161 * 14 4 3 16 16 O 1.42099 * 106.40218 * 336.46484 * 14 4 3 17 17 C 1.76206 * 107.21719 * 90.00240 * 14 4 3 18 18 C 1.38230 * 120.00076 * 97.22795 * 17 14 4 19 19 C 1.50698 * 119.99865 * 359.97438 * 18 17 14 20 20 C 1.38235 * 119.99966 * 179.78550 * 18 17 14 21 21 C 1.38236 * 119.99767 * 0.44904 * 20 18 17 22 22 C 1.50701 * 119.99749 * 179.83246 * 21 20 18 23 23 C 1.38229 * 120.00338 * 359.80592 * 21 20 18 24 24 C 1.38237 * 119.99781 * 277.50687 * 17 14 4 25 25 C 1.50703 * 120.00137 * 359.97384 * 24 17 14 26 26 H 1.08002 * 120.00078 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00487 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00078 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47085 * 5.00486 * 3 2 1 30 30 H 1.08993 * 109.47371 * 245.00179 * 3 2 1 31 31 H 1.09000 * 109.46866 * 35.00105 * 5 4 3 32 32 H 1.09004 * 109.46954 * 154.99688 * 5 4 3 33 33 H 0.97003 * 120.00442 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47320 * 82.88409 * 19 18 17 35 35 H 1.08999 * 109.47421 * 202.88084 * 19 18 17 36 36 H 1.08994 * 109.47573 * 322.88231 * 19 18 17 37 37 H 1.07998 * 119.99873 * 180.27325 * 20 18 17 38 38 H 1.09001 * 109.47139 * 269.97563 * 22 21 20 39 39 H 1.08994 * 109.47172 * 29.97437 * 22 21 20 40 40 H 1.09000 * 109.47349 * 149.97273 * 22 21 20 41 41 H 1.07999 * 120.00501 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46860 * 82.37666 * 25 24 17 43 43 H 1.09001 * 109.47128 * 202.37525 * 25 24 17 44 44 H 1.09000 * 109.47468 * 322.37397 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9548 3.8414 1.7040 8 6 2.2090 3.9029 3.7031 9 7 1.7756 3.2006 4.7270 10 14 2.2960 5.7653 3.8178 11 1 1.0111 6.3502 3.3572 12 1 2.5443 6.1635 5.2267 13 1 3.4019 6.2629 2.9607 14 16 4.5713 0.8758 0.9173 15 8 5.0503 0.4763 2.1940 16 8 4.5923 0.0262 -0.2215 17 6 5.4769 2.3215 0.4762 18 6 6.1760 3.0208 1.4422 19 6 6.1631 2.5469 2.8727 20 6 6.8900 4.1524 1.0954 21 6 6.8975 4.5901 -0.2158 22 6 7.6729 5.8260 -0.5933 23 6 6.1941 3.8939 -1.1809 24 6 5.4836 2.7597 -0.8348 25 6 4.7168 2.0006 -1.8870 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6213 1.4026 -0.9313 31 1 1.4983 1.4371 2.5982 32 1 3.1613 1.3203 3.2221 33 1 1.5007 3.6497 5.5417 34 1 6.9091 1.7629 3.0026 35 1 6.3946 3.3818 3.5342 36 1 5.1763 2.1533 3.1163 37 1 7.4398 4.6962 1.8493 38 1 7.0307 6.7014 -0.4966 39 1 8.5328 5.9314 0.0680 40 1 8.0159 5.7390 -1.6242 41 1 6.2002 4.2356 -2.2054 42 1 3.6690 2.2996 -1.8594 43 1 5.1322 2.2223 -2.8700 44 1 4.7947 0.9310 -1.6925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298707199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:57 Heat of formation + Delta-G solvation = -39.785479 kcal Electronic energy + Delta-G solvation = -27036.813225 eV Core-core repulsion = 23467.320524 eV Total energy + Delta-G solvation = -3569.492702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63424 -38.64676 -37.93188 -36.91605 -35.00646 -34.62722 -34.36627 -33.51837 -29.36084 -28.91687 -28.04213 -27.63087 -26.48557 -24.15101 -22.28333 -21.90461 -20.99000 -19.92890 -18.68654 -18.54213 -18.00522 -17.57578 -16.89080 -16.25260 -15.90043 -15.75955 -15.37280 -15.14108 -15.06856 -14.64368 -14.38368 -14.26816 -14.13948 -14.00452 -13.79945 -13.72917 -13.41868 -13.18989 -13.07720 -13.05681 -12.99343 -12.95492 -12.52313 -12.39953 -12.29134 -12.22120 -12.06044 -11.81237 -11.63616 -11.60621 -11.21641 -10.57234 -10.28447 -9.99293 -9.71575 -9.53448 -8.15959 -6.27941 -0.49200 -0.08343 0.37408 1.38286 1.39741 1.40902 1.50066 2.13623 2.40968 2.51588 2.84762 3.15927 3.38615 3.74656 3.77697 3.84107 3.92691 4.17130 4.30698 4.34049 4.36377 4.51801 4.54333 4.58647 4.64804 4.77919 4.79438 4.86568 4.90114 4.94873 5.00185 5.09280 5.10473 5.28521 5.30735 5.35838 5.47128 5.48678 5.52072 5.57261 5.72079 5.77303 5.82451 6.01173 6.02267 6.11863 6.82819 7.41326 8.91995 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.007931 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.245952 B = 3529.535081 C = 5231.004392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.141 3.859 4 N -0.981 5.981 5 C 0.262 3.738 6 C -0.534 4.534 7 H 0.061 0.939 8 C 0.020 3.980 9 N -0.924 5.924 10 Si 0.946 3.054 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.267 1.267 14 S 2.691 3.309 15 O -0.987 6.987 16 O -0.975 6.975 17 C -0.698 4.698 18 C 0.024 3.976 19 C -0.143 4.143 20 C -0.171 4.171 21 C -0.028 4.028 22 C -0.116 4.116 23 C -0.163 4.163 24 C 0.016 3.984 25 C -0.192 4.192 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 2.608 -13.338 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.016 3.984 4 N -0.818 5.818 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.180 4.180 9 N -0.563 5.563 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.192 1.192 14 S 2.787 3.213 15 O -0.978 6.978 16 O -0.965 6.965 17 C -0.788 4.788 18 C 0.022 3.978 19 C -0.200 4.200 20 C -0.190 4.190 21 C -0.028 4.028 22 C -0.173 4.173 23 C -0.181 4.181 24 C 0.014 3.986 25 C -0.248 4.248 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.176 0.824 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.135 1.768 -13.038 14.967 hybrid contribution -0.138 1.464 0.722 1.638 sum 6.997 3.232 -12.316 14.529 Atomic orbital electron populations 1.24024 0.95234 1.02918 0.98435 1.23395 0.97043 0.98578 1.01693 1.20667 0.93254 0.96344 0.88104 1.57264 1.24589 1.82788 1.17143 1.18781 0.95450 0.94099 0.77807 1.21699 1.43481 0.92549 0.99573 0.92104 1.25625 0.94836 1.02252 0.95274 1.70041 1.44407 1.37193 1.04699 0.85733 0.78783 0.80966 0.77380 1.19844 1.20906 1.19194 1.01536 0.72743 0.74636 0.72384 1.93527 1.80271 1.82254 1.41708 1.93325 1.87083 1.65388 1.50723 1.30352 1.20730 1.25743 1.01972 1.19737 0.90620 0.92920 0.94475 1.21382 1.05201 1.01659 0.91741 1.21288 1.02810 0.97383 0.97486 1.20607 0.93618 0.95952 0.92613 1.20972 0.99466 0.93175 1.03642 1.21341 1.00052 0.95703 1.01022 1.19850 0.92959 0.94014 0.91730 1.22162 1.00166 1.04223 0.98214 0.87913 0.86626 0.87662 0.89808 0.88194 0.95774 0.95758 0.92565 0.89729 0.90667 0.90038 0.83917 0.89774 0.90037 0.89115 0.82350 0.89311 0.87750 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.78 0.97 -3.64 16 2 C -0.19 -5.98 9.84 25.65 0.25 -5.73 16 3 C 0.14 4.89 5.78 85.63 0.50 5.39 16 4 N -0.98 -41.18 2.75 -523.93 -1.44 -42.62 16 5 C 0.26 13.24 5.03 85.63 0.43 13.67 16 6 C -0.53 -28.09 9.23 25.60 0.24 -27.85 16 7 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.02 1.08 5.46 84.66 0.46 1.54 16 9 N -0.92 -53.04 13.29 21.45 0.28 -52.76 16 10 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 S 2.69 110.98 5.08 -56.49 -0.29 110.70 16 15 O -0.99 -46.37 12.45 -128.00 -1.59 -47.96 16 16 O -0.97 -38.27 13.27 -128.00 -1.70 -39.97 16 17 C -0.70 -26.55 5.96 22.27 0.13 -26.42 16 18 C 0.02 0.91 5.88 -19.87 -0.12 0.79 16 19 C -0.14 -5.75 8.33 71.24 0.59 -5.16 16 20 C -0.17 -5.37 9.33 22.27 0.21 -5.16 16 21 C -0.03 -0.72 5.88 -19.87 -0.12 -0.84 16 22 C -0.12 -1.97 10.01 71.24 0.71 -1.26 16 23 C -0.16 -4.32 9.33 22.27 0.21 -4.11 16 24 C 0.02 0.51 5.87 -19.86 -0.12 0.39 16 25 C -0.19 -5.12 8.41 71.24 0.60 -4.52 16 26 H 0.10 2.70 7.84 -2.91 -0.02 2.68 16 27 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.11 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.08 2.91 7.76 -2.39 -0.02 2.89 16 30 H 0.10 3.00 4.22 -2.39 -0.01 2.99 16 31 H 0.02 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.02 1.37 6.33 -2.38 -0.02 1.35 16 33 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.08 3.18 7.88 -2.39 -0.02 3.16 16 35 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 36 H 0.08 3.87 4.63 -2.39 -0.01 3.86 16 37 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.09 1.15 8.09 -2.39 -0.02 1.14 16 41 H 0.16 2.99 8.05 -2.91 -0.02 2.97 16 42 H 0.09 2.21 5.98 -2.39 -0.01 2.19 16 43 H 0.10 2.05 8.03 -2.39 -0.02 2.03 16 44 H 0.12 3.63 4.52 -18.81 -0.09 3.54 16 Total: -1.00 -66.38 362.35 3.16 -63.22 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.92 Total: 27.76 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 4.95 Total: -62.88 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -1.16 Total: -95.38 kcal Atomic # 8 Polarization: -84.64 SS G_CDS: -3.29 Total: -87.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 110.98 SS G_CDS: -0.29 Total: 110.70 kcal Total: -66.38 3.16 -63.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298707199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.434 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds