Wall clock time and date at job start Tue Mar 31 2020 13:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47338 * 299.99970 * 3 2 1 6 6 H 1.48503 * 109.47085 * 59.99980 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 163.06367 * 7 2 1 9 9 N 1.36930 * 120.00324 * 343.06571 * 7 2 1 10 10 C 1.46924 * 120.63300 * 151.82723 * 9 7 2 11 11 C 1.53194 * 108.89447 * 126.34039 * 10 9 7 12 12 C 1.53349 * 109.14721 * 54.57940 * 11 10 9 13 13 C 1.53003 * 109.41694 * 178.67625 * 12 11 10 14 14 N 1.46500 * 109.47030 * 295.12891 * 13 12 11 15 15 C 1.34776 * 120.00365 * 180.02562 * 14 13 12 16 16 O 1.21699 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.46654 * 120.00652 * 179.97438 * 15 14 13 18 18 C 1.36544 * 125.99293 * 179.97438 * 17 15 14 19 19 C 1.40360 * 106.70918 * 179.97438 * 18 17 15 20 20 C 1.35130 * 107.11634 * 359.97438 * 19 18 17 21 21 N 1.48023 * 125.61742 * 180.02562 * 20 19 18 22 22 O 1.21808 * 119.99804 * 0.02562 * 21 20 19 23 23 O 1.21799 * 120.00262 * 180.02562 * 21 20 19 24 24 O 1.33928 * 108.76662 * 359.76128 * 20 19 18 25 25 C 1.53036 * 109.60956 * 298.70862 * 12 11 10 26 26 C 1.46929 * 120.63078 * 331.84993 * 9 7 2 27 27 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.59145 * 246.20128 * 10 9 7 29 29 H 1.09001 * 109.58665 * 6.48479 * 10 9 7 30 30 H 1.08999 * 109.49595 * 174.66017 * 11 10 9 31 31 H 1.08997 * 109.49661 * 294.75715 * 11 10 9 32 32 H 1.09000 * 109.42245 * 58.75320 * 12 11 10 33 33 H 1.08994 * 109.47312 * 55.12644 * 13 12 11 34 34 H 1.09000 * 109.47156 * 175.13126 * 13 12 11 35 35 H 0.96997 * 120.00038 * 359.97438 * 14 13 12 36 36 H 1.08002 * 126.63916 * 359.94588 * 18 17 15 37 37 H 1.07999 * 126.44151 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.50017 * 301.42937 * 25 12 11 39 39 H 1.08996 * 109.50185 * 181.32584 * 25 12 11 40 40 H 1.09002 * 109.58736 * 353.37125 * 26 9 7 41 41 H 1.08995 * 109.58640 * 113.65901 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0550 -1.2225 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2007 11 6 2.0698 -4.6198 0.9596 12 6 0.8119 -4.7020 1.8328 13 6 1.0496 -5.6916 2.9753 14 7 1.2325 -7.0372 2.4256 15 6 1.4570 -8.0780 3.2519 16 8 1.5073 -7.9001 4.4548 17 6 1.6395 -9.4251 2.7018 18 6 1.8730 -10.5613 3.4223 19 6 1.9813 -11.6110 2.4967 20 6 1.8108 -11.0764 1.2674 21 7 1.8453 -11.8236 -0.0099 22 8 2.0405 -13.0260 -0.0070 23 8 1.6787 -11.2363 -1.0638 24 8 1.5996 -9.7601 1.3955 25 6 0.4975 -3.3208 2.4120 26 6 0.2260 -2.3408 1.2661 27 1 -0.4849 0.8401 -0.0004 28 1 1.0399 -4.0600 -0.8517 29 1 2.7329 -3.5126 -0.7693 30 1 2.3076 -5.6073 0.5643 31 1 2.9048 -4.2563 1.5585 32 1 -0.0283 -5.0417 1.2271 33 1 1.9427 -5.4006 3.5281 34 1 0.1898 -5.6866 3.6452 35 1 1.1913 -7.1793 1.4670 36 1 1.9583 -10.6374 4.4962 37 1 2.1661 -12.6504 2.7243 38 1 1.3473 -2.9697 2.9973 39 1 -0.3830 -3.3861 3.0511 40 1 0.0993 -1.3354 1.6676 41 1 -0.6775 -2.6386 0.7342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330914849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:16 Heat of formation + Delta-G solvation = -7.103041 kcal Electronic energy + Delta-G solvation = -26645.629048 eV Core-core repulsion = 22531.260348 eV Total energy + Delta-G solvation = -4114.368699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.98302 -41.57251 -40.00058 -39.55068 -38.00727 -36.04054 -34.73832 -34.12989 -32.64257 -32.55159 -30.66070 -29.69239 -27.51739 -25.76835 -24.95795 -23.94825 -22.37410 -21.88688 -21.34835 -20.73468 -20.24700 -19.22280 -18.83097 -17.85857 -17.30993 -17.22140 -17.03419 -16.80626 -16.69164 -16.33421 -16.09930 -15.42428 -15.21228 -14.96391 -14.81813 -14.65879 -14.44852 -14.23086 -13.89550 -13.60414 -13.52337 -13.21726 -13.11332 -12.70868 -12.48167 -12.31143 -12.21163 -12.00682 -11.80936 -11.68872 -11.18212 -10.90841 -10.61048 -10.52334 -10.24890 -10.18927 -9.98190 -9.97663 -8.78681 -5.30468 -1.75521 0.42791 0.73088 0.94499 1.11430 1.65287 1.86006 2.08959 2.26345 2.39935 2.55359 2.74094 2.91223 3.19914 3.27515 3.46943 3.56257 3.77262 3.81794 3.94388 4.05941 4.14431 4.19657 4.31536 4.44327 4.49232 4.56160 4.66049 4.72338 4.75300 4.84215 4.91087 4.94975 5.07141 5.23928 5.26161 5.60968 5.63501 5.75469 5.97310 6.01971 6.54929 6.68886 7.27637 7.64910 8.29526 9.67223 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002374 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.598868 B =11789.385493 C =12683.349906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.083 4.083 3 Si 1.030 2.970 4 H -0.204 1.204 5 H -0.258 1.258 6 H -0.259 1.259 7 C 0.363 3.637 8 H 0.276 0.724 9 N -0.416 5.416 10 C 0.074 3.926 11 C -0.148 4.148 12 C -0.103 4.103 13 C 0.126 3.874 14 N -0.731 5.731 15 C 0.615 3.385 16 O -0.608 6.608 17 C -0.316 4.316 18 C -0.052 4.052 19 C -0.400 4.400 20 C 0.043 3.957 21 N 0.025 4.975 22 O -0.626 6.626 23 O -0.641 6.641 24 O -0.247 6.247 25 C -0.124 4.124 26 C 0.079 3.921 27 H 0.378 0.622 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.401 0.599 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 75.558 -1.844 75.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.319 4.319 3 Si 0.843 3.157 4 H -0.125 1.125 5 H -0.182 1.182 6 H -0.184 1.184 7 C 0.183 3.817 8 H 0.291 0.709 9 N -0.084 5.084 10 C -0.045 4.045 11 C -0.185 4.185 12 C -0.122 4.122 13 C 0.004 3.996 14 N -0.383 5.383 15 C 0.413 3.587 16 O -0.497 6.497 17 C -0.365 4.365 18 C -0.074 4.074 19 C -0.426 4.426 20 C -0.132 4.132 21 N 0.327 4.673 22 O -0.708 6.708 23 O -0.723 6.723 24 O -0.152 6.152 25 C -0.162 4.162 26 C -0.041 4.041 27 H 0.197 0.803 28 H 0.146 0.854 29 H 0.182 0.818 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.236 0.764 36 H 0.158 0.842 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.536 75.333 -1.536 75.364 hybrid contribution -0.413 -1.317 -0.454 1.453 sum -1.949 74.016 -1.990 74.068 Atomic orbital electron populations 1.69932 1.09274 1.41507 0.95518 1.28497 0.97588 1.06864 0.98945 0.84122 0.81028 0.69820 0.80772 1.12508 1.18244 1.18354 1.27000 0.99492 0.81810 0.73365 0.70903 1.49632 1.23208 1.09234 1.26360 1.23240 1.06581 0.78745 0.95938 1.22206 0.98404 1.00878 0.97063 1.21571 0.99495 0.95349 0.95805 1.21465 1.01149 0.80195 0.96837 1.45589 1.75421 1.07406 1.09842 1.15945 0.76428 0.81413 0.84923 1.90581 1.58957 1.84996 1.15118 1.20535 1.38887 0.95918 0.81201 1.21141 0.97497 0.91267 0.97474 1.19534 1.34027 0.98065 0.90996 1.21590 1.21759 0.83225 0.86658 1.39408 1.33062 0.97802 0.97067 1.93675 1.82969 1.00566 1.93639 1.93599 1.83191 1.72461 1.23072 1.83370 1.84349 1.20751 1.26744 1.22009 1.05556 0.91225 0.97432 1.23104 0.87958 1.03746 0.89259 0.80284 0.85428 0.81833 0.91267 0.88327 0.89694 0.91982 0.92828 0.76411 0.84179 0.89317 0.88565 0.87947 0.84481 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 10.69 11.20 21.65 0.24 10.93 16 2 C -0.08 2.07 4.92 84.86 0.42 2.49 16 3 Si 1.03 -22.63 29.59 68.60 2.03 -20.60 16 4 H -0.20 4.78 7.11 99.48 0.71 5.49 16 5 H -0.26 4.22 7.11 99.48 0.71 4.93 16 6 H -0.26 4.24 7.11 99.48 0.71 4.95 16 7 C 0.36 -10.16 9.58 84.04 0.81 -9.35 16 8 H 0.28 -10.76 7.88 -2.91 -0.02 -10.78 16 9 N -0.42 8.23 2.99 -699.08 -2.09 6.14 16 10 C 0.07 -1.02 6.50 86.36 0.56 -0.45 16 11 C -0.15 0.00 5.27 30.78 0.16 0.16 16 12 C -0.10 -0.49 2.19 -10.66 -0.02 -0.51 16 13 C 0.13 2.72 5.07 86.38 0.44 3.16 16 14 N -0.73 -28.27 5.27 -467.10 -2.46 -30.73 16 15 C 0.61 33.89 7.79 86.44 0.67 34.56 16 16 O -0.61 -34.24 16.87 -4.35 -0.07 -34.31 16 17 C -0.32 -22.17 7.13 24.07 0.17 -22.00 16 18 C -0.05 -3.76 10.62 22.39 0.24 -3.52 16 19 C -0.40 -33.83 10.53 22.07 0.23 -33.60 16 20 C 0.04 3.97 8.23 81.21 0.67 4.64 16 21 N 0.02 2.55 4.45 -154.82 -0.69 1.86 16 22 O -0.63 -65.89 19.00 18.88 0.36 -65.53 16 23 O -0.64 -65.95 19.25 21.80 0.42 -65.53 16 24 O -0.25 -20.01 10.40 0.04 0.00 -20.01 16 25 C -0.12 0.82 5.36 30.67 0.16 0.98 16 26 C 0.08 -1.21 5.30 86.37 0.46 -0.75 16 27 H 0.38 -8.00 8.31 -92.71 -0.77 -8.77 16 28 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 29 H 0.16 -3.48 7.93 -2.39 -0.02 -3.50 16 30 H 0.07 0.73 7.16 -2.39 -0.02 0.72 16 31 H 0.10 -0.26 8.14 -2.39 -0.02 -0.27 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.40 15.54 7.41 -92.71 -0.69 14.85 16 36 H 0.14 9.01 8.06 -2.91 -0.02 8.99 16 37 H 0.09 7.50 8.06 -2.91 -0.02 7.48 16 38 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.14 -2.65 6.06 -2.39 -0.01 -2.66 16 41 H 0.12 -1.65 8.14 -2.39 -0.02 -1.67 16 Total: -1.00 -225.11 354.83 3.09 -222.02 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.39 Total: 19.97 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 4.97 Total: -24.21 kcal Atomic # 7 Polarization: -6.81 SS G_CDS: -5.00 Total: -11.81 kcal Atomic # 8 Polarization: -186.08 SS G_CDS: 0.71 Total: -185.38 kcal Atomic # 14 Polarization: -22.63 SS G_CDS: 2.03 Total: -20.60 kcal Total: -225.11 3.09 -222.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330914849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.919 kcal (2) G-P(sol) polarization free energy of solvation -225.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -222.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds