Wall clock time and date at job start Tue Mar 31 2020 13:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38262 * 120.00427 * 2 1 4 4 C 1.38204 * 120.00041 * 180.27523 * 3 2 1 5 5 C 1.38255 * 120.00081 * 359.46808 * 4 3 2 6 6 C 1.50703 * 120.00091 * 180.27491 * 5 4 3 7 7 N 1.46497 * 109.47525 * 260.00006 * 6 5 4 8 8 S 1.65602 * 120.00304 * 164.99672 * 7 6 5 9 9 O 1.42093 * 104.27815 * 181.07349 * 8 7 6 10 10 O 1.42100 * 104.27794 * 308.93120 * 8 7 6 11 11 C 1.81397 * 104.44700 * 65.00296 * 8 7 6 12 12 C 1.52998 * 109.47153 * 173.81497 * 11 8 7 13 13 C 1.50697 * 115.55046 * 65.19405 * 12 11 8 14 14 H 1.07996 * 120.00183 * 264.78389 * 13 12 11 15 15 C 1.37880 * 120.00384 * 84.78668 * 13 12 11 16 16 N 1.31518 * 119.99675 * 352.22925 * 15 13 12 17 17 Si 1.86795 * 120.00396 * 172.23320 * 15 13 12 18 18 H 1.48499 * 109.47113 * 90.00085 * 17 15 13 19 19 H 1.48499 * 109.47333 * 209.99773 * 17 15 13 20 20 H 1.48498 * 109.46981 * 329.99744 * 17 15 13 21 21 C 1.53002 * 117.49939 * 279.52307 * 12 11 8 22 22 C 1.52999 * 117.50052 * 210.86395 * 12 11 8 23 23 C 1.38206 * 120.00196 * 0.25648 * 5 4 3 24 24 C 1.50702 * 120.00464 * 180.02562 * 23 5 4 25 25 C 1.38216 * 119.99849 * 179.71901 * 2 1 3 26 26 H 1.09000 * 109.47180 * 270.28288 * 1 2 3 27 27 H 1.08997 * 109.46930 * 30.27452 * 1 2 3 28 28 H 1.08998 * 109.47650 * 150.27975 * 1 2 3 29 29 H 1.08001 * 119.99417 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99930 * 179.74169 * 4 3 2 31 31 H 1.09008 * 109.47093 * 19.99972 * 6 5 4 32 32 H 1.08999 * 109.47395 * 139.99950 * 6 5 4 33 33 H 0.97002 * 119.99699 * 345.00007 * 7 6 5 34 34 H 1.09004 * 109.47008 * 293.81381 * 11 8 7 35 35 H 1.08999 * 109.47345 * 53.81056 * 11 8 7 36 36 H 0.97001 * 120.00366 * 185.02800 * 16 15 13 37 37 H 1.09001 * 117.49653 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49662 * 145.01908 * 21 12 11 39 39 H 1.09002 * 117.50224 * 214.97791 * 22 12 11 40 40 H 1.09003 * 117.49795 * 359.97438 * 22 12 11 41 41 H 1.08995 * 109.47410 * 89.99564 * 24 23 5 42 42 H 1.09001 * 109.47406 * 209.99959 * 24 23 5 43 43 H 1.09002 * 109.46898 * 329.99495 * 24 23 5 44 44 H 1.08002 * 120.00063 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2716 -0.0001 -0.0004 6 6 5.7787 -0.0001 -0.0004 7 7 6.2671 -0.2461 -1.3595 8 16 7.8491 0.0624 -1.7394 9 8 7.9482 -0.2632 -3.1189 10 8 8.0667 1.3903 -1.2826 11 6 8.7937 -1.1183 -0.7373 12 6 10.2742 -1.0378 -1.1147 13 6 10.9554 0.2687 -0.7987 14 1 11.0401 1.0312 -1.5587 15 6 11.4706 0.4907 0.4608 16 7 11.2358 -0.3689 1.4281 17 14 12.5018 2.0123 0.7934 18 1 11.6184 3.1232 1.2299 19 1 13.4900 1.7167 1.8617 20 1 13.2168 2.4064 -0.4470 21 6 10.7239 -1.7827 -2.3732 22 6 11.1056 -2.3162 -0.9902 23 6 3.5806 -1.1970 0.0054 24 6 4.3340 -2.5021 0.0118 25 6 2.1980 -1.1970 0.0059 26 1 -0.3633 0.0051 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 -0.0100 31 1 6.1421 0.9672 0.3468 32 1 6.1420 -0.7844 0.6637 33 1 5.6637 -0.5896 -2.0369 34 1 8.6742 -0.8759 0.3187 35 1 8.4259 -2.1276 -0.9221 36 1 11.5357 -0.1774 2.3305 37 1 9.9649 -2.3298 -2.9325 38 1 11.5128 -1.3278 -2.9724 39 1 12.1453 -2.2122 -0.6800 40 1 10.5978 -3.2145 -0.6389 41 1 4.5156 -2.8118 1.0409 42 1 3.7450 -3.2643 -0.4984 43 1 5.2865 -2.3743 -0.5027 44 1 1.6580 -2.1323 0.0100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331804177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:25 Heat of formation + Delta-G solvation = -39.083896 kcal Electronic energy + Delta-G solvation = -25418.258411 eV Core-core repulsion = 21848.796132 eV Total energy + Delta-G solvation = -3569.462279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.86088 -36.75423 -36.27059 -35.65370 -35.03881 -32.98352 -32.04737 -32.02603 -28.16531 -28.02952 -27.22731 -25.45210 -24.22986 -22.21213 -21.21303 -20.28654 -19.71681 -18.65185 -17.14088 -16.58289 -16.13307 -15.98418 -15.34956 -15.05121 -14.81143 -14.67989 -14.32445 -14.05412 -13.73542 -13.42690 -13.34610 -13.26604 -13.11734 -12.77722 -12.38495 -12.15985 -11.95131 -11.84674 -11.79386 -11.46967 -11.27758 -11.14985 -11.04757 -11.01206 -10.93735 -10.81910 -10.57380 -10.45300 -10.11894 -9.73942 -9.20948 -8.95401 -8.85765 -8.59308 -8.55887 -8.09055 -6.14100 -4.24403 0.95736 1.27636 1.31370 3.31008 3.36595 3.39833 3.41797 3.74490 4.37509 4.50747 4.61469 4.62382 4.79340 4.84359 5.01904 5.07135 5.14701 5.18892 5.22420 5.34353 5.35308 5.44492 5.50235 5.56195 5.60719 5.70528 5.71399 5.78662 5.96966 6.00058 6.08535 6.14827 6.26374 6.36003 6.37163 6.45674 6.58899 6.61015 6.72409 6.91344 6.98362 7.22392 7.29673 7.39126 7.80527 8.20590 8.81049 9.46727 10.93518 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.003461 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.113337 B = 8088.650399 C = 8543.470779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.093 4.093 5 C -0.098 4.098 6 C 0.156 3.844 7 N -1.129 6.129 8 S 2.606 3.394 9 O -0.974 6.974 10 O -0.950 6.950 11 C -0.554 4.554 12 C 0.044 3.956 13 C -0.516 4.516 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.875 5.875 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.208 4.208 22 C -0.141 4.141 23 C -0.065 4.065 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.620 -3.435 0.028 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.112 4.112 5 C -0.100 4.100 6 C 0.031 3.969 7 N -0.885 5.885 8 S 2.703 3.297 9 O -0.964 6.964 10 O -0.940 6.940 11 C -0.687 4.687 12 C 0.041 3.959 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.246 4.246 22 C -0.180 4.180 23 C -0.066 4.066 24 C -0.182 4.182 25 C -0.143 4.143 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.242 0.758 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.118 -2.739 -0.251 18.325 hybrid contribution 0.191 0.062 0.628 0.659 sum -17.927 -2.676 0.376 18.130 Atomic orbital electron populations 1.20783 0.91343 1.02672 1.02225 1.19921 0.95941 0.93239 0.99259 1.20999 0.94098 0.97492 1.02176 1.21162 0.94134 0.97853 0.98042 1.19748 0.94961 0.92927 1.02331 1.20136 0.90463 1.02686 0.83657 1.56060 1.30066 1.84285 1.18123 1.05171 0.72564 0.76779 0.75143 1.93505 1.85353 1.86073 1.31509 1.93531 1.83712 1.34130 1.82594 1.29982 1.10175 1.13201 1.15361 1.18267 0.87056 0.94238 0.96295 1.20527 1.37770 0.99034 0.98017 0.91372 1.24947 0.95110 0.96246 0.95965 1.69976 1.45334 1.35030 1.00654 0.86583 0.80273 0.83122 0.78229 1.20024 1.21087 1.19443 1.23199 1.03865 1.06154 0.91354 1.22551 1.00932 0.96865 0.97679 1.19818 0.93598 0.94976 0.98189 1.20940 1.00686 0.93737 1.02844 1.20877 0.93360 0.97508 1.02603 0.91243 0.91599 0.91644 0.86102 0.85466 0.89354 0.90846 0.75768 0.84830 0.88235 0.92743 0.90678 0.89542 0.89601 0.91537 0.90755 0.91499 0.90507 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.08 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 4 C -0.09 -1.10 9.67 -39.59 -0.38 -1.49 16 5 C -0.10 -1.22 5.28 -104.63 -0.55 -1.77 16 6 C 0.16 2.15 5.39 -5.19 -0.03 2.12 16 7 N -1.13 -16.96 5.22 -11.65 -0.06 -17.02 16 8 S 2.61 52.24 5.19 -107.50 -0.56 51.68 16 9 O -0.97 -21.42 18.08 -57.54 -1.04 -22.46 16 10 O -0.95 -22.52 17.16 -57.54 -0.99 -23.51 16 11 C -0.55 -11.38 5.93 37.16 0.22 -11.16 16 12 C 0.04 1.06 1.32 -155.66 -0.21 0.85 16 13 C -0.52 -14.08 8.18 -34.44 -0.28 -14.36 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 16 N -0.87 -23.80 12.98 55.43 0.72 -23.08 16 17 Si 0.89 21.32 29.55 -169.99 -5.02 16.29 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.21 -4.56 9.96 -26.69 -0.27 -4.83 16 22 C -0.14 -3.19 9.49 -26.69 -0.25 -3.44 16 23 C -0.07 -0.73 5.88 -104.62 -0.62 -1.34 16 24 C -0.13 -1.22 9.26 36.01 0.33 -0.88 16 25 C -0.13 -1.27 9.36 -39.58 -0.37 -1.64 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.43 8.04 -52.49 -0.42 1.01 16 31 H 0.09 1.29 7.56 -51.92 -0.39 0.90 16 32 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 33 H 0.41 5.43 8.60 -34.47 -0.30 5.13 16 34 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 35 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 36 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 39 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.08 0.79 6.34 -51.93 -0.33 0.46 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -32.71 379.61 -11.21 -43.93 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.85 Total: 7.85 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: -3.14 Total: -39.40 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.66 Total: -40.11 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.03 Total: -45.96 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.56 Total: 51.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.71 -11.21 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331804177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.842 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds