Wall clock time and date at job start Tue Mar 31 2020 13:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38262 * 120.00427 * 2 1 4 4 C 1.38204 * 120.00041 * 180.27523 * 3 2 1 5 5 C 1.38255 * 120.00081 * 359.46808 * 4 3 2 6 6 C 1.50703 * 120.00091 * 180.27491 * 5 4 3 7 7 N 1.46497 * 109.47525 * 260.00006 * 6 5 4 8 8 S 1.65602 * 120.00304 * 164.99672 * 7 6 5 9 9 O 1.42093 * 104.27815 * 181.07349 * 8 7 6 10 10 O 1.42100 * 104.27794 * 308.93120 * 8 7 6 11 11 C 1.81397 * 104.44700 * 65.00296 * 8 7 6 12 12 C 1.52998 * 109.47153 * 173.81497 * 11 8 7 13 13 C 1.50697 * 115.55046 * 65.19405 * 12 11 8 14 14 H 1.07996 * 120.00183 * 264.78389 * 13 12 11 15 15 C 1.37880 * 120.00384 * 84.78668 * 13 12 11 16 16 N 1.31518 * 119.99675 * 352.22925 * 15 13 12 17 17 Si 1.86795 * 120.00396 * 172.23320 * 15 13 12 18 18 H 1.48499 * 109.47113 * 90.00085 * 17 15 13 19 19 H 1.48499 * 109.47333 * 209.99773 * 17 15 13 20 20 H 1.48498 * 109.46981 * 329.99744 * 17 15 13 21 21 C 1.53002 * 117.49939 * 279.52307 * 12 11 8 22 22 C 1.52999 * 117.50052 * 210.86395 * 12 11 8 23 23 C 1.38206 * 120.00196 * 0.25648 * 5 4 3 24 24 C 1.50702 * 120.00464 * 180.02562 * 23 5 4 25 25 C 1.38216 * 119.99849 * 179.71901 * 2 1 3 26 26 H 1.09000 * 109.47180 * 270.28288 * 1 2 3 27 27 H 1.08997 * 109.46930 * 30.27452 * 1 2 3 28 28 H 1.08998 * 109.47650 * 150.27975 * 1 2 3 29 29 H 1.08001 * 119.99417 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.99930 * 179.74169 * 4 3 2 31 31 H 1.09008 * 109.47093 * 19.99972 * 6 5 4 32 32 H 1.08999 * 109.47395 * 139.99950 * 6 5 4 33 33 H 0.97002 * 119.99699 * 345.00007 * 7 6 5 34 34 H 1.09004 * 109.47008 * 293.81381 * 11 8 7 35 35 H 1.08999 * 109.47345 * 53.81056 * 11 8 7 36 36 H 0.97001 * 120.00366 * 185.02800 * 16 15 13 37 37 H 1.09001 * 117.49653 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49662 * 145.01908 * 21 12 11 39 39 H 1.09002 * 117.50224 * 214.97791 * 22 12 11 40 40 H 1.09003 * 117.49795 * 359.97438 * 22 12 11 41 41 H 1.08995 * 109.47410 * 89.99564 * 24 23 5 42 42 H 1.09001 * 109.47406 * 209.99959 * 24 23 5 43 43 H 1.09002 * 109.46898 * 329.99495 * 24 23 5 44 44 H 1.08002 * 120.00063 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2716 -0.0001 -0.0004 6 6 5.7787 -0.0001 -0.0004 7 7 6.2671 -0.2461 -1.3595 8 16 7.8491 0.0624 -1.7394 9 8 7.9482 -0.2632 -3.1189 10 8 8.0667 1.3903 -1.2826 11 6 8.7937 -1.1183 -0.7373 12 6 10.2742 -1.0378 -1.1147 13 6 10.9554 0.2687 -0.7987 14 1 11.0401 1.0312 -1.5587 15 6 11.4706 0.4907 0.4608 16 7 11.2358 -0.3689 1.4281 17 14 12.5018 2.0123 0.7934 18 1 11.6184 3.1232 1.2299 19 1 13.4900 1.7167 1.8617 20 1 13.2168 2.4064 -0.4470 21 6 10.7239 -1.7827 -2.3732 22 6 11.1056 -2.3162 -0.9902 23 6 3.5806 -1.1970 0.0054 24 6 4.3340 -2.5021 0.0118 25 6 2.1980 -1.1970 0.0059 26 1 -0.3633 0.0051 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1325 -0.0100 31 1 6.1421 0.9672 0.3468 32 1 6.1420 -0.7844 0.6637 33 1 5.6637 -0.5896 -2.0369 34 1 8.6742 -0.8759 0.3187 35 1 8.4259 -2.1276 -0.9221 36 1 11.5357 -0.1774 2.3305 37 1 9.9649 -2.3298 -2.9325 38 1 11.5128 -1.3278 -2.9724 39 1 12.1453 -2.2122 -0.6800 40 1 10.5978 -3.2145 -0.6389 41 1 4.5156 -2.8118 1.0409 42 1 3.7450 -3.2643 -0.4984 43 1 5.2865 -2.3743 -0.5027 44 1 1.6580 -2.1323 0.0100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331804177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:24 Heat of formation + Delta-G solvation = -59.066007 kcal Electronic energy + Delta-G solvation = -25419.124900 eV Core-core repulsion = 21848.796132 eV Total energy + Delta-G solvation = -3570.328768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68470 -38.55747 -37.95949 -36.86314 -36.61841 -34.07907 -33.86034 -32.86303 -29.84521 -28.87715 -27.98282 -27.47833 -25.15871 -23.03552 -22.97968 -21.53614 -21.06867 -20.24483 -18.57197 -18.35621 -17.51743 -16.98662 -16.71867 -16.63060 -16.37514 -15.84026 -15.58985 -15.45048 -14.90559 -14.78331 -14.40478 -14.01707 -14.01051 -13.76512 -13.67878 -13.65345 -13.19102 -13.10823 -12.98459 -12.90394 -12.87121 -12.86006 -12.78280 -12.42890 -12.37248 -12.20688 -11.91179 -11.83028 -11.75535 -11.55482 -10.86689 -10.56375 -10.50966 -9.86650 -9.66213 -9.40218 -8.19073 -6.33306 -0.54454 0.36021 0.48504 1.38407 1.41118 1.49358 2.06084 2.39940 2.81631 2.94530 3.08190 3.39486 3.45720 3.69847 3.86957 3.98229 4.03739 4.07854 4.25956 4.31312 4.42245 4.45713 4.52821 4.60688 4.64785 4.70191 4.82878 4.84176 4.87480 4.88727 4.91199 4.97388 4.99198 5.11226 5.22507 5.27896 5.38794 5.47974 5.54079 5.60156 5.69710 5.72266 5.73906 6.11112 6.13267 6.23526 6.72431 7.38790 8.87784 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.003461 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.113337 B = 8088.650399 C = 8543.470779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.153 3.847 7 N -1.109 6.109 8 S 2.622 3.378 9 O -0.995 6.995 10 O -0.994 6.994 11 C -0.549 4.549 12 C 0.011 3.989 13 C -0.537 4.537 14 H 0.047 0.953 15 C 0.044 3.956 16 N -0.890 5.890 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.198 4.198 22 C -0.137 4.137 23 C -0.070 4.070 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.420 0.580 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.660 -4.822 0.189 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.156 4.156 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.027 3.973 7 N -0.870 5.870 8 S 2.720 3.280 9 O -0.986 6.986 10 O -0.984 6.984 11 C -0.683 4.683 12 C 0.009 3.991 13 C -0.574 4.574 14 H 0.065 0.935 15 C -0.159 4.159 16 N -0.526 5.526 17 Si 0.759 3.241 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.235 4.235 22 C -0.176 4.176 23 C -0.070 4.070 24 C -0.184 4.184 25 C -0.149 4.149 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.256 0.744 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.152 -4.129 -0.103 20.571 hybrid contribution 0.729 0.484 0.571 1.045 sum -19.422 -3.645 0.468 19.767 Atomic orbital electron populations 1.20840 0.89195 1.03689 1.03160 1.20315 0.97585 0.92847 0.97675 1.21244 0.93573 0.98780 1.01965 1.21290 0.95104 0.97691 0.98831 1.19661 0.93842 0.93858 1.04447 1.20253 0.91900 1.02384 0.82714 1.55543 1.28202 1.83983 1.19251 1.04388 0.73371 0.75881 0.74334 1.93462 1.86190 1.86140 1.32790 1.93476 1.84949 1.36847 1.83110 1.29851 1.08220 1.15469 1.14714 1.18396 0.88860 0.93503 0.98366 1.20706 1.38659 1.00230 0.97800 0.93482 1.25490 0.95959 0.98461 0.95973 1.70010 1.45891 1.35897 1.00780 0.85925 0.79299 0.80633 0.78260 1.20272 1.19764 1.19515 1.23249 1.04004 1.05281 0.90970 1.22514 0.99863 0.97061 0.98143 1.20020 0.94305 0.94969 0.97741 1.21000 1.00474 0.93498 1.03459 1.21189 0.93058 0.98647 1.01976 0.90215 0.90813 0.90476 0.84449 0.85968 0.90936 0.89433 0.74409 0.85649 0.84498 0.92514 0.88228 0.90091 0.91592 0.89187 0.90060 0.89765 0.91215 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.52 16 2 C -0.08 -1.45 5.88 -19.87 -0.12 -1.57 16 3 C -0.14 -2.68 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.59 9.67 22.27 0.22 -2.37 16 5 C -0.12 -2.81 5.28 -19.87 -0.10 -2.91 16 6 C 0.15 4.17 5.39 85.63 0.46 4.63 16 7 N -1.11 -32.70 5.22 -190.78 -1.00 -33.70 16 8 S 2.62 105.09 5.19 -56.49 -0.29 104.79 16 9 O -1.00 -43.33 18.08 -127.65 -2.31 -45.64 16 10 O -0.99 -48.46 17.16 -127.65 -2.19 -50.65 16 11 C -0.55 -22.08 5.93 71.98 0.43 -21.65 16 12 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 13 C -0.54 -29.76 8.18 25.60 0.21 -29.55 16 14 H 0.05 2.73 7.83 -2.91 -0.02 2.70 16 15 C 0.04 2.42 5.38 84.65 0.46 2.88 16 16 N -0.89 -48.52 12.98 21.45 0.28 -48.24 16 17 Si 0.93 44.05 29.55 68.60 2.03 46.07 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.20 -8.45 9.96 30.62 0.30 -8.14 16 22 C -0.14 -6.04 9.49 30.62 0.29 -5.75 16 23 C -0.07 -1.42 5.88 -19.87 -0.12 -1.54 16 24 C -0.13 -2.18 9.26 71.24 0.66 -1.52 16 25 C -0.13 -2.31 9.36 22.27 0.21 -2.10 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.12 2.85 8.04 -2.91 -0.02 2.83 16 31 H 0.07 2.20 7.56 -2.38 -0.02 2.18 16 32 H 0.09 2.11 7.28 -2.39 -0.02 2.10 16 33 H 0.42 10.69 8.60 -96.74 -0.83 9.86 16 34 H 0.13 5.27 8.14 -2.39 -0.02 5.25 16 35 H 0.14 4.34 8.09 -2.39 -0.02 4.32 16 36 H 0.27 13.77 8.32 -92.71 -0.77 13.00 16 37 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 43 H 0.07 1.28 6.34 -2.39 -0.02 1.26 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.17 379.61 0.43 -69.74 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.16 Total: 29.75 kcal Atomic # 6 Polarization: -75.87 SS G_CDS: 3.75 Total: -72.12 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -0.72 Total: -81.94 kcal Atomic # 8 Polarization: -91.79 SS G_CDS: -4.50 Total: -96.29 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 105.09 SS G_CDS: -0.29 Total: 104.79 kcal Total: -70.17 0.43 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331804177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.672 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds