Wall clock time and date at job start Tue Mar 31 2020 14:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 119.99616 * 2 1 4 4 C 1.38220 * 119.99884 * 180.34461 * 3 2 1 5 5 C 1.38251 * 119.99574 * 359.91243 * 4 3 2 6 6 C 1.38213 * 120.00659 * 0.04185 * 5 4 3 7 7 C 1.38208 * 120.00344 * 180.27549 * 2 1 3 8 8 C 1.50706 * 119.99683 * 359.70398 * 7 2 1 9 9 H 1.08998 * 109.46716 * 324.99440 * 8 7 2 10 10 C 1.52998 * 109.47401 * 84.99827 * 8 7 2 11 11 N 1.46498 * 109.46670 * 204.99803 * 8 7 2 12 12 S 1.65602 * 119.99815 * 145.00026 * 11 8 7 13 13 O 1.42099 * 104.27824 * 181.06849 * 12 11 8 14 14 O 1.42099 * 104.27702 * 308.92656 * 12 11 8 15 15 C 1.81402 * 104.45153 * 64.99814 * 12 11 8 16 16 C 1.52997 * 109.47322 * 173.42562 * 15 12 11 17 17 C 1.50693 * 115.55083 * 65.26507 * 16 15 12 18 18 H 1.08001 * 120.00805 * 268.59128 * 17 16 15 19 19 C 1.37881 * 119.99902 * 88.59550 * 17 16 15 20 20 N 1.31512 * 120.00227 * 174.66198 * 19 17 16 21 21 Si 1.86804 * 119.99854 * 354.66285 * 19 17 16 22 22 H 1.48498 * 109.47218 * 92.56944 * 21 19 17 23 23 H 1.48494 * 109.46987 * 212.57112 * 21 19 17 24 24 H 1.48501 * 109.46734 * 332.56996 * 21 19 17 25 25 C 1.53002 * 117.49530 * 279.59984 * 16 15 12 26 26 C 1.52996 * 117.49781 * 210.94117 * 16 15 12 27 27 H 1.08995 * 109.46905 * 269.72455 * 1 2 3 28 28 H 1.08999 * 109.46855 * 29.72534 * 1 2 3 29 29 H 1.08996 * 109.46765 * 149.72094 * 1 2 3 30 30 H 1.07999 * 120.00509 * 0.27671 * 3 2 1 31 31 H 1.07995 * 119.99540 * 179.97438 * 4 3 2 32 32 H 1.08005 * 119.99512 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.00061 * 180.02562 * 6 5 4 34 34 H 1.08992 * 109.47197 * 179.97438 * 10 8 7 35 35 H 1.09002 * 109.47037 * 300.00050 * 10 8 7 36 36 H 1.09002 * 109.47103 * 59.99809 * 10 8 7 37 37 H 0.97001 * 120.00666 * 324.99960 * 11 8 7 38 38 H 1.09002 * 109.46752 * 293.42445 * 15 12 11 39 39 H 1.08997 * 109.47094 * 53.42090 * 15 12 11 40 40 H 0.97000 * 119.99981 * 180.02562 * 20 19 17 41 41 H 1.09001 * 117.49809 * 0.02562 * 25 16 15 42 42 H 1.08999 * 117.49852 * 145.01813 * 25 16 15 43 43 H 1.08999 * 117.50204 * 214.97339 * 26 16 15 44 44 H 1.08998 * 117.50181 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0072 5 6 4.2716 0.0002 -0.0126 6 6 3.5807 -1.1968 -0.0116 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0053 9 1 0.5367 -2.3971 0.5885 10 6 1.0743 -2.8777 -1.4414 11 7 2.2873 -3.5520 0.5723 12 16 1.6039 -4.7548 1.4827 13 8 2.7049 -5.5573 1.8863 14 8 0.8117 -4.0636 2.4387 15 6 0.5493 -5.6608 0.3176 16 6 -0.0168 -6.9056 1.0038 17 6 -0.9587 -6.6439 2.1506 18 1 -0.5765 -6.5740 3.1583 19 6 -2.3087 -6.4938 1.9134 20 7 -3.1438 -6.3704 2.9219 21 14 -2.9514 -6.4656 0.1597 22 1 -3.3411 -7.8397 -0.2468 23 1 -4.1344 -5.5717 0.0804 24 1 -1.8894 -5.9632 -0.7486 25 6 0.8915 -8.1329 1.1016 26 6 -0.2911 -8.1309 0.1297 27 1 -0.3633 -0.0049 1.0276 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3633 -0.8875 -0.5182 30 1 1.6583 2.1327 0.0045 31 1 4.1203 2.1328 -0.0076 32 1 5.3517 0.0003 -0.0178 33 1 4.1207 -2.1321 -0.0154 34 1 0.5297 -3.8218 -1.4411 35 1 0.4474 -2.0964 -1.8712 36 1 1.9823 -2.9826 -2.0353 37 1 3.2454 -3.5428 0.4215 38 1 -0.2707 -5.0191 -0.0048 39 1 1.1387 -5.9600 -0.5491 40 1 -4.0935 -6.2651 2.7550 41 1 1.8924 -8.0534 0.6774 42 1 0.8074 -8.7513 1.9952 43 1 -1.1527 -8.7481 0.3843 44 1 -0.0688 -8.0502 -0.9343 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331808560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:24 Heat of formation + Delta-G solvation = -48.779733 kcal Electronic energy + Delta-G solvation = -26139.154026 eV Core-core repulsion = 22569.271305 eV Total energy + Delta-G solvation = -3569.882722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76030 -38.85473 -38.04960 -37.13427 -36.81305 -34.28871 -33.84792 -31.70365 -30.45214 -29.75666 -27.82024 -27.59244 -24.70637 -23.35160 -22.76958 -21.59904 -21.30588 -20.24209 -18.78317 -18.60750 -17.78601 -17.03282 -16.93174 -16.65060 -16.32534 -15.90479 -15.57120 -15.29185 -15.02690 -14.82022 -14.61905 -14.46665 -14.29616 -13.96145 -13.91215 -13.29901 -13.21664 -13.08759 -13.01176 -12.98731 -12.83714 -12.72788 -12.62360 -12.49289 -12.36888 -12.04035 -11.86695 -11.77877 -11.69145 -11.55983 -10.96555 -10.75703 -10.67685 -10.15814 -9.70176 -9.46376 -8.31256 -6.44992 -0.61209 0.43177 0.49374 1.37094 1.37974 1.51721 1.95535 2.36851 2.84369 2.85137 3.01054 3.15829 3.37154 3.58507 3.77277 3.91962 4.03766 4.12009 4.14578 4.23373 4.28109 4.30712 4.36252 4.41146 4.49402 4.60939 4.66179 4.76973 4.79334 4.83379 4.86481 4.96852 5.04087 5.07810 5.14036 5.20387 5.28240 5.38340 5.45770 5.60880 5.62403 5.62693 5.72863 6.10313 6.14107 6.20178 6.66480 7.27832 8.85193 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.004397 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.773421 B = 6365.854519 C = 7070.762044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.130 4.130 6 C -0.123 4.123 7 C -0.098 4.098 8 C 0.176 3.824 9 H 0.084 0.916 10 C -0.175 4.175 11 N -1.108 6.108 12 S 2.616 3.384 13 O -0.993 6.993 14 O -0.996 6.996 15 C -0.569 4.569 16 C -0.033 4.033 17 C -0.515 4.515 18 H 0.025 0.975 19 C 0.026 3.974 20 N -0.943 5.943 21 Si 0.933 3.067 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.210 1.210 25 C -0.175 4.175 26 C -0.166 4.166 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.421 0.579 38 H 0.135 0.865 39 H 0.162 0.838 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.152 13.190 -15.919 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.148 4.148 6 C -0.141 4.141 7 C -0.100 4.100 8 C 0.069 3.931 9 H 0.102 0.898 10 C -0.234 4.234 11 N -0.870 5.870 12 S 2.714 3.286 13 O -0.983 6.983 14 O -0.986 6.986 15 C -0.702 4.702 16 C -0.035 4.035 17 C -0.552 4.552 18 H 0.043 0.957 19 C -0.173 4.173 20 N -0.580 5.580 21 Si 0.755 3.245 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.132 1.132 25 C -0.213 4.213 26 C -0.204 4.204 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.259 0.741 38 H 0.153 0.847 39 H 0.179 0.821 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.963 13.093 -14.867 23.142 hybrid contribution -0.656 -0.234 -0.204 0.726 sum 11.307 12.858 -15.071 22.811 Atomic orbital electron populations 1.21018 0.90677 1.04201 1.02780 1.19960 0.96789 0.92715 0.99680 1.21312 0.94849 0.97639 1.00530 1.21480 0.94314 0.98987 0.99294 1.21414 1.01051 0.92135 1.00188 1.21121 0.93344 0.99264 1.00404 1.19800 0.94489 0.93620 1.02069 1.19837 0.92560 0.84604 0.96071 0.89789 1.22485 1.03633 1.03201 0.94038 1.55655 1.18675 1.40583 1.72097 1.04526 0.74335 0.73953 0.75823 1.93470 1.52459 1.70710 1.81678 1.93523 1.72745 1.72822 1.59475 1.30249 1.14542 1.10355 1.15048 1.18767 1.00743 0.86176 0.97828 1.20447 0.92080 1.50794 0.91876 0.95654 1.25976 0.96630 0.92636 1.02075 1.70075 1.03810 1.50013 1.34145 0.85979 0.78964 0.79174 0.80382 1.18872 1.22088 1.13190 1.23106 0.95280 1.01379 1.01487 1.23094 0.99543 1.00696 0.97086 0.91654 0.89258 0.90856 0.84080 0.83705 0.83926 0.85132 0.91094 0.89555 0.89874 0.74061 0.84684 0.82060 0.92268 0.86902 0.90368 0.90266 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.21 71.24 0.66 -1.91 16 2 C -0.09 -1.98 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 5 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 6 C -0.12 -2.55 9.29 22.27 0.21 -2.35 16 7 C -0.10 -2.30 5.06 -19.87 -0.10 -2.40 16 8 C 0.18 4.45 2.32 44.25 0.10 4.55 16 9 H 0.08 2.48 6.34 -2.39 -0.02 2.47 16 10 C -0.18 -3.31 9.27 71.98 0.67 -2.64 16 11 N -1.11 -30.45 5.23 -172.52 -0.90 -31.35 16 12 S 2.62 101.54 5.17 -56.49 -0.29 101.25 16 13 O -0.99 -42.07 18.08 -127.65 -2.31 -44.38 16 14 O -1.00 -49.66 17.08 -127.65 -2.18 -51.84 16 15 C -0.57 -19.96 4.47 71.98 0.32 -19.63 16 16 C -0.03 -1.43 0.79 -52.93 -0.04 -1.47 16 17 C -0.51 -29.54 8.79 25.60 0.23 -29.32 16 18 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 19 C 0.03 1.49 5.47 84.66 0.46 1.95 16 20 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 21 Si 0.93 41.26 24.96 68.60 1.71 42.97 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.21 -7.65 5.68 99.48 0.57 -7.08 16 25 C -0.18 -6.81 9.96 30.62 0.30 -6.51 16 26 C -0.17 -6.11 7.67 30.62 0.23 -5.88 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.31 8.08 -2.39 -0.02 1.30 16 29 H 0.07 1.40 5.42 -2.39 -0.01 1.39 16 30 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.13 2.31 6.07 -2.91 -0.02 2.29 16 34 H 0.07 1.32 6.00 -2.39 -0.01 1.30 16 35 H 0.09 1.39 6.88 -2.39 -0.02 1.37 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.42 9.38 6.52 -96.75 -0.63 8.75 16 38 H 0.14 4.54 5.61 -2.39 -0.01 4.52 16 39 H 0.16 3.92 8.09 -2.39 -0.02 3.90 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 42 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.08 3.15 7.34 -2.39 -0.02 3.13 16 44 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -81.08 359.95 0.16 -80.92 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.24 Total: 35.34 kcal Atomic # 6 Polarization: -77.23 SS G_CDS: 3.59 Total: -73.64 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -0.60 Total: -90.62 kcal Atomic # 8 Polarization: -91.73 SS G_CDS: -4.49 Total: -96.22 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.71 Total: 42.97 kcal Atomic # 16 Polarization: 101.54 SS G_CDS: -0.29 Total: 101.25 kcal Total: -81.08 0.16 -80.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331808560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.140 kcal (2) G-P(sol) polarization free energy of solvation -81.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds