Wall clock time and date at job start Tue Mar 31 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99934 * 2 1 4 4 C 1.38216 * 119.99958 * 180.23601 * 3 2 1 5 5 C 1.38256 * 120.00021 * 359.80924 * 4 3 2 6 6 C 1.38221 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00271 * 179.79819 * 2 1 3 8 8 C 1.50702 * 119.99747 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47104 * 32.92385 * 8 7 2 10 10 C 1.52995 * 109.47376 * 272.92227 * 8 7 2 11 11 N 1.46501 * 109.46990 * 152.91920 * 8 7 2 12 12 S 1.65601 * 120.00123 * 217.95474 * 11 8 7 13 13 O 1.42099 * 104.27628 * 181.07091 * 12 11 8 14 14 O 1.42096 * 104.27601 * 308.93411 * 12 11 8 15 15 C 1.81408 * 104.44671 * 65.00390 * 12 11 8 16 16 C 1.53000 * 109.46832 * 178.17510 * 15 12 11 17 17 C 1.50699 * 115.55271 * 62.58294 * 16 15 12 18 18 H 1.08001 * 119.99862 * 267.50531 * 17 16 15 19 19 C 1.37875 * 120.00370 * 87.49914 * 17 16 15 20 20 N 1.31520 * 119.99434 * 2.62857 * 19 17 16 21 21 Si 1.86792 * 120.00450 * 182.62604 * 19 17 16 22 22 H 1.48501 * 109.47298 * 89.99746 * 21 19 17 23 23 H 1.48507 * 109.47334 * 210.00347 * 21 19 17 24 24 H 1.48507 * 109.46979 * 329.99770 * 21 19 17 25 25 C 1.53000 * 117.49807 * 276.90809 * 16 15 12 26 26 C 1.53005 * 117.49595 * 208.24927 * 16 15 12 27 27 H 1.09002 * 109.46881 * 270.20622 * 1 2 3 28 28 H 1.08992 * 109.47348 * 30.20516 * 1 2 3 29 29 H 1.09003 * 109.47003 * 150.21041 * 1 2 3 30 30 H 1.07994 * 120.00465 * 0.06423 * 3 2 1 31 31 H 1.07996 * 120.00236 * 179.83543 * 4 3 2 32 32 H 1.07999 * 120.00549 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00135 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.46977 * 299.99730 * 10 8 7 35 35 H 1.08999 * 109.47244 * 59.99635 * 10 8 7 36 36 H 1.08998 * 109.47091 * 179.97438 * 10 8 7 37 37 H 0.97003 * 119.99905 * 37.95795 * 11 8 7 38 38 H 1.09003 * 109.46763 * 298.17216 * 15 12 11 39 39 H 1.08999 * 109.47276 * 58.17030 * 15 12 11 40 40 H 0.97007 * 119.99637 * 185.02350 * 20 19 17 41 41 H 1.08999 * 117.49602 * 0.02562 * 25 16 15 42 42 H 1.09003 * 117.49909 * 145.02115 * 25 16 15 43 43 H 1.08990 * 117.49863 * 214.97719 * 26 16 15 44 44 H 1.09003 * 117.49883 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2717 0.0000 -0.0059 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1969 0.0042 8 6 1.4446 -2.5021 0.0094 9 1 0.5157 -2.3875 -0.5492 10 6 1.1264 -2.9016 1.4516 11 7 2.2652 -3.5422 -0.6158 12 16 1.5574 -4.6871 -1.5804 13 8 2.6345 -5.5237 -1.9795 14 8 0.4877 -5.1946 -0.7947 15 6 0.9184 -3.7525 -2.9979 16 6 0.2731 -4.7166 -3.9953 17 6 -0.9207 -5.4799 -3.4823 18 1 -0.7879 -6.4556 -3.0387 19 6 -2.1825 -4.9326 -3.5790 20 7 -2.3506 -3.7675 -4.1655 21 14 -3.6531 -5.8458 -2.8773 22 1 -3.8572 -5.4427 -1.4627 23 1 -4.8658 -5.5124 -3.6670 24 1 -3.4055 -7.3085 -2.9444 25 6 1.1954 -5.4302 -4.9859 26 6 0.2711 -4.3102 -5.4704 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8919 -0.5106 30 1 1.6583 2.1327 0.0010 31 1 4.1204 2.1326 -0.0076 32 1 5.3517 0.0000 -0.0093 33 1 4.1206 -2.1323 -0.0025 34 1 2.0554 -3.0162 2.0102 35 1 0.5159 -2.1277 1.9168 36 1 0.5811 -3.8453 1.4552 37 1 3.2233 -3.5603 -0.4647 38 1 0.1745 -3.0340 -2.6537 39 1 1.7381 -3.2226 -3.4830 40 1 -3.2254 -3.3483 -4.1696 41 1 2.2619 -5.2130 -4.9267 42 1 0.9384 -6.4516 -5.2667 43 1 -0.5934 -4.5953 -6.0698 44 1 0.7291 -3.3558 -5.7301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331808562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:28 Heat of formation + Delta-G solvation = -30.153018 kcal Electronic energy + Delta-G solvation = -26226.648645 eV Core-core repulsion = 22657.573639 eV Total energy + Delta-G solvation = -3569.075007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87710 -36.73797 -36.40188 -35.91444 -35.05379 -32.97351 -32.01316 -30.71230 -29.05819 -28.21562 -26.94895 -25.44347 -23.80962 -21.84332 -21.16575 -20.61645 -19.71498 -18.66675 -17.39496 -16.67457 -16.37654 -15.73536 -15.27891 -15.08832 -14.77518 -14.62559 -14.24793 -14.14190 -13.74532 -13.44037 -13.24502 -13.14227 -13.06535 -12.36179 -12.18619 -12.06328 -11.94066 -11.82383 -11.63619 -11.36924 -11.27139 -11.14019 -11.05325 -10.98072 -10.89559 -10.59469 -10.52995 -10.42761 -10.09770 -9.71836 -9.32665 -9.05376 -8.86464 -8.63477 -8.50232 -8.07048 -6.12581 -4.23931 1.04696 1.28167 1.31490 3.32332 3.37429 3.41256 3.43599 3.69052 4.39022 4.45001 4.63311 4.73721 4.85528 4.90928 5.00735 5.07311 5.16522 5.21922 5.25188 5.35073 5.39078 5.47594 5.60742 5.65430 5.76420 5.78084 5.90961 5.92677 5.98282 6.09123 6.16687 6.27149 6.35534 6.37673 6.42627 6.45391 6.61987 6.64316 6.74172 6.93256 7.00923 7.20774 7.27139 7.48148 7.80856 8.20868 8.82385 9.47560 10.94743 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.004624 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.985389 B = 6053.426155 C = 6472.265147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.085 4.085 8 C 0.189 3.811 9 H 0.099 0.901 10 C -0.163 4.163 11 N -1.128 6.128 12 S 2.606 3.394 13 O -0.975 6.975 14 O -0.944 6.944 15 C -0.555 4.555 16 C 0.037 3.963 17 C -0.510 4.510 18 H 0.068 0.932 19 C 0.081 3.919 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.270 1.270 25 C -0.212 4.212 26 C -0.131 4.131 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 10.732 8.645 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.082 3.918 9 H 0.117 0.883 10 C -0.222 4.222 11 N -0.884 5.884 12 S 2.703 3.297 13 O -0.966 6.966 14 O -0.934 6.934 15 C -0.688 4.688 16 C 0.035 3.965 17 C -0.548 4.548 18 H 0.086 0.914 19 C -0.123 4.123 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.195 1.195 25 C -0.249 4.249 26 C -0.170 4.170 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.242 0.758 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.891 9.893 8.739 15.915 hybrid contribution -0.370 0.492 0.040 0.617 sum 8.521 10.385 8.780 16.047 Atomic orbital electron populations 1.20965 0.90959 1.03713 1.02673 1.19752 0.96230 0.92348 0.99188 1.21006 0.94237 0.97345 1.01085 1.21105 0.94320 0.97945 1.00570 1.21088 0.99753 0.92453 1.01030 1.20903 0.93565 0.98118 0.99971 1.19923 0.94004 0.94223 1.00502 1.19649 0.92841 0.83874 0.95469 0.88319 1.22253 1.02170 1.03036 0.94720 1.56222 1.18818 1.47363 1.66028 1.05200 0.74064 0.74361 0.76067 1.93506 1.54723 1.64305 1.84040 1.93544 1.56432 1.76484 1.66919 1.29992 1.09328 1.12468 1.17001 1.18307 0.95195 0.95414 0.87603 1.20538 0.89591 1.03775 1.40847 0.91353 1.24937 0.98737 0.95139 0.93536 1.70028 1.23857 1.16218 1.41042 0.86594 0.81565 0.80700 0.79405 1.19953 1.21253 1.19451 1.23222 0.95222 0.97908 1.08541 1.22491 0.99788 0.95732 0.98989 0.90765 0.91229 0.90546 0.86059 0.86284 0.86172 0.86049 0.92265 0.91673 0.90221 0.75841 0.85542 0.88107 0.92841 0.90883 0.89556 0.89138 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.60 36.00 0.35 -1.02 16 2 C -0.07 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.11 -1.23 9.29 -39.58 -0.37 -1.60 16 7 C -0.08 -1.07 5.05 -104.62 -0.53 -1.60 16 8 C 0.19 2.64 2.44 -69.08 -0.17 2.47 16 9 H 0.10 1.45 5.15 -51.93 -0.27 1.19 16 10 C -0.16 -2.11 9.50 37.15 0.35 -1.76 16 11 N -1.13 -16.97 5.19 -5.88 -0.03 -17.00 16 12 S 2.61 52.10 5.11 -107.50 -0.55 51.55 16 13 O -0.98 -21.37 18.08 -57.54 -1.04 -22.41 16 14 O -0.94 -21.86 16.75 -57.54 -0.96 -22.82 16 15 C -0.55 -11.53 5.82 37.16 0.22 -11.32 16 16 C 0.04 0.90 1.48 -155.66 -0.23 0.67 16 17 C -0.51 -13.86 7.85 -34.44 -0.27 -14.14 16 18 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 19 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 20 N -0.88 -23.80 12.54 55.43 0.70 -23.10 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.21 -4.71 9.96 -26.69 -0.27 -4.97 16 26 C -0.13 -3.02 9.06 -26.69 -0.24 -3.26 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.08 0.92 5.99 -51.93 -0.31 0.61 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.23 6.16 -52.49 -0.32 0.90 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 37 H 0.41 5.18 6.65 -34.47 -0.23 4.95 16 38 H 0.13 2.64 7.54 -51.92 -0.39 2.25 16 39 H 0.10 1.82 8.11 -51.92 -0.42 1.39 16 40 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 43 H 0.09 2.23 8.10 -51.93 -0.42 1.81 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -32.28 372.35 -10.88 -43.16 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.54 Total: 9.51 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: -3.05 Total: -40.81 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.66 Total: -40.10 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.00 Total: -45.23 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 52.10 SS G_CDS: -0.55 Total: 51.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.28 -10.88 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331808562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.010 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds