Wall clock time and date at job start Tue Mar 31 2020 14:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99934 * 2 1 4 4 C 1.38216 * 119.99958 * 180.23601 * 3 2 1 5 5 C 1.38256 * 120.00021 * 359.80924 * 4 3 2 6 6 C 1.38221 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00271 * 179.79819 * 2 1 3 8 8 C 1.50702 * 119.99747 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47104 * 32.92385 * 8 7 2 10 10 C 1.52995 * 109.47376 * 272.92227 * 8 7 2 11 11 N 1.46501 * 109.46990 * 152.91920 * 8 7 2 12 12 S 1.65601 * 120.00123 * 217.95474 * 11 8 7 13 13 O 1.42099 * 104.27628 * 181.07091 * 12 11 8 14 14 O 1.42096 * 104.27601 * 308.93411 * 12 11 8 15 15 C 1.81408 * 104.44671 * 65.00390 * 12 11 8 16 16 C 1.53000 * 109.46832 * 178.17510 * 15 12 11 17 17 C 1.50699 * 115.55271 * 62.58294 * 16 15 12 18 18 H 1.08001 * 119.99862 * 267.50531 * 17 16 15 19 19 C 1.37875 * 120.00370 * 87.49914 * 17 16 15 20 20 N 1.31520 * 119.99434 * 2.62857 * 19 17 16 21 21 Si 1.86792 * 120.00450 * 182.62604 * 19 17 16 22 22 H 1.48501 * 109.47298 * 89.99746 * 21 19 17 23 23 H 1.48507 * 109.47334 * 210.00347 * 21 19 17 24 24 H 1.48507 * 109.46979 * 329.99770 * 21 19 17 25 25 C 1.53000 * 117.49807 * 276.90809 * 16 15 12 26 26 C 1.53005 * 117.49595 * 208.24927 * 16 15 12 27 27 H 1.09002 * 109.46881 * 270.20622 * 1 2 3 28 28 H 1.08992 * 109.47348 * 30.20516 * 1 2 3 29 29 H 1.09003 * 109.47003 * 150.21041 * 1 2 3 30 30 H 1.07994 * 120.00465 * 0.06423 * 3 2 1 31 31 H 1.07996 * 120.00236 * 179.83543 * 4 3 2 32 32 H 1.07999 * 120.00549 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00135 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.46977 * 299.99730 * 10 8 7 35 35 H 1.08999 * 109.47244 * 59.99635 * 10 8 7 36 36 H 1.08998 * 109.47091 * 179.97438 * 10 8 7 37 37 H 0.97003 * 119.99905 * 37.95795 * 11 8 7 38 38 H 1.09003 * 109.46763 * 298.17216 * 15 12 11 39 39 H 1.08999 * 109.47276 * 58.17030 * 15 12 11 40 40 H 0.97007 * 119.99637 * 185.02350 * 20 19 17 41 41 H 1.08999 * 117.49602 * 0.02562 * 25 16 15 42 42 H 1.09003 * 117.49909 * 145.02115 * 25 16 15 43 43 H 1.08990 * 117.49863 * 214.97719 * 26 16 15 44 44 H 1.09003 * 117.49883 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2717 0.0000 -0.0059 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1969 0.0042 8 6 1.4446 -2.5021 0.0094 9 1 0.5157 -2.3875 -0.5492 10 6 1.1264 -2.9016 1.4516 11 7 2.2652 -3.5422 -0.6158 12 16 1.5574 -4.6871 -1.5804 13 8 2.6345 -5.5237 -1.9795 14 8 0.4877 -5.1946 -0.7947 15 6 0.9184 -3.7525 -2.9979 16 6 0.2731 -4.7166 -3.9953 17 6 -0.9207 -5.4799 -3.4823 18 1 -0.7879 -6.4556 -3.0387 19 6 -2.1825 -4.9326 -3.5790 20 7 -2.3506 -3.7675 -4.1655 21 14 -3.6531 -5.8458 -2.8773 22 1 -3.8572 -5.4427 -1.4627 23 1 -4.8658 -5.5124 -3.6670 24 1 -3.4055 -7.3085 -2.9444 25 6 1.1954 -5.4302 -4.9859 26 6 0.2711 -4.3102 -5.4704 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8919 -0.5106 30 1 1.6583 2.1327 0.0010 31 1 4.1204 2.1326 -0.0076 32 1 5.3517 0.0000 -0.0093 33 1 4.1206 -2.1323 -0.0025 34 1 2.0554 -3.0162 2.0102 35 1 0.5159 -2.1277 1.9168 36 1 0.5811 -3.8453 1.4552 37 1 3.2233 -3.5603 -0.4647 38 1 0.1745 -3.0340 -2.6537 39 1 1.7381 -3.2226 -3.4830 40 1 -3.2254 -3.3483 -4.1696 41 1 2.2619 -5.2130 -4.9267 42 1 0.9384 -6.4516 -5.2667 43 1 -0.5934 -4.5953 -6.0698 44 1 0.7291 -3.3558 -5.7301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331808562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:27 Heat of formation + Delta-G solvation = -49.689148 kcal Electronic energy + Delta-G solvation = -26227.495795 eV Core-core repulsion = 22657.573639 eV Total energy + Delta-G solvation = -3569.922157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74284 -38.57113 -38.00712 -37.10773 -36.73381 -34.05775 -33.81615 -31.70009 -30.08774 -29.90467 -27.76534 -27.47744 -24.76314 -22.98378 -22.74113 -21.60648 -21.43936 -20.21945 -18.74283 -18.32438 -17.79530 -16.84192 -16.78472 -16.61243 -16.35401 -15.91244 -15.61727 -15.24133 -15.08031 -14.90687 -14.36079 -14.25442 -13.94924 -13.82028 -13.68830 -13.36729 -13.14231 -13.13374 -12.96348 -12.91665 -12.83754 -12.76929 -12.57939 -12.52834 -12.42025 -12.22117 -11.91737 -11.85779 -11.55987 -11.48359 -11.00258 -10.66663 -10.47974 -9.89145 -9.67697 -9.46260 -8.17970 -6.33277 -0.54163 0.44721 0.51388 1.39034 1.42149 1.50293 1.98441 2.40951 2.85706 2.91656 3.09010 3.36005 3.44147 3.60062 3.89519 3.93802 4.04527 4.06654 4.22493 4.26599 4.34169 4.37113 4.49250 4.52597 4.59004 4.66701 4.81473 4.81798 4.82858 4.87633 4.97092 5.00080 5.08175 5.14294 5.21189 5.29033 5.36386 5.43641 5.62641 5.62649 5.65002 5.71773 5.76001 6.11134 6.15717 6.22449 6.73313 7.39270 8.88987 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.004624 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.985389 B = 6053.426155 C = 6472.265147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.121 4.121 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.100 4.100 8 C 0.185 3.815 9 H 0.086 0.914 10 C -0.162 4.162 11 N -1.110 6.110 12 S 2.624 3.376 13 O -0.996 6.996 14 O -0.982 6.982 15 C -0.553 4.553 16 C 0.007 3.993 17 C -0.528 4.528 18 H 0.048 0.952 19 C 0.045 3.955 20 N -0.892 5.892 21 Si 0.932 3.068 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.201 4.201 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.420 0.580 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.265 0.735 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 12.596 9.206 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.146 4.146 6 C -0.138 4.138 7 C -0.102 4.102 8 C 0.078 3.922 9 H 0.104 0.896 10 C -0.221 4.221 11 N -0.871 5.871 12 S 2.721 3.279 13 O -0.986 6.986 14 O -0.971 6.971 15 C -0.686 4.686 16 C 0.005 3.995 17 C -0.565 4.565 18 H 0.067 0.933 19 C -0.158 4.158 20 N -0.528 5.528 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.238 4.238 26 C -0.168 4.168 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.258 0.742 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.308 11.750 9.292 18.184 hybrid contribution -0.750 -0.027 -0.115 0.759 sum 9.558 11.723 9.177 17.692 Atomic orbital electron populations 1.20990 0.90878 1.03259 1.03353 1.19908 0.96559 0.92711 0.99656 1.21286 0.94849 0.97562 1.00547 1.21475 0.94251 0.98998 0.99151 1.21405 1.01031 0.92053 1.00149 1.21099 0.93219 0.99243 1.00221 1.19805 0.94505 0.93419 1.02429 1.19752 0.92478 0.84426 0.95529 0.89624 1.22242 1.02880 1.02398 0.94572 1.55716 1.19576 1.46859 1.64951 1.04370 0.73229 0.74462 0.75817 1.93467 1.55008 1.65642 1.84497 1.93498 1.58060 1.77794 1.67777 1.29893 1.10001 1.11800 1.16892 1.18445 0.95543 0.96793 0.88765 1.20684 0.91284 1.03493 1.41079 0.93346 1.25461 1.00503 0.95889 0.93945 1.70067 1.24405 1.16834 1.41542 0.85947 0.79721 0.79634 0.78956 1.19925 1.19971 1.19707 1.23273 0.96219 0.97503 1.06809 1.22414 0.99446 0.96939 0.97955 0.89575 0.90192 0.92439 0.84180 0.83718 0.83903 0.85229 0.90880 0.89942 0.92531 0.74214 0.86133 0.85217 0.92586 0.88484 0.89970 0.91349 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.60 71.23 0.68 -1.98 16 2 C -0.09 -1.93 5.88 -19.87 -0.12 -2.05 16 3 C -0.12 -2.28 9.70 22.27 0.22 -2.07 16 4 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.12 -2.48 9.29 22.27 0.21 -2.27 16 7 C -0.10 -2.37 5.05 -19.87 -0.10 -2.47 16 8 C 0.18 5.08 2.44 44.24 0.11 5.19 16 9 H 0.09 2.58 5.15 -2.39 -0.01 2.57 16 10 C -0.16 -4.13 9.50 71.98 0.68 -3.44 16 11 N -1.11 -32.63 5.19 -172.53 -0.90 -33.53 16 12 S 2.62 104.94 5.11 -56.49 -0.29 104.65 16 13 O -1.00 -43.13 18.08 -127.65 -2.31 -45.44 16 14 O -0.98 -46.56 16.75 -127.65 -2.14 -48.70 16 15 C -0.55 -22.77 5.82 71.98 0.42 -22.35 16 16 C 0.01 0.33 1.48 -52.93 -0.08 0.25 16 17 C -0.53 -29.24 7.85 25.60 0.20 -29.04 16 18 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 19 C 0.04 2.44 5.42 84.65 0.46 2.90 16 20 N -0.89 -48.82 12.54 21.45 0.27 -48.55 16 21 Si 0.93 44.08 29.54 68.60 2.03 46.10 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 25 C -0.20 -8.77 9.96 30.62 0.30 -8.47 16 26 C -0.13 -5.87 9.06 30.62 0.28 -5.59 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 29 H 0.06 1.40 5.99 -2.39 -0.01 1.39 16 30 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.13 2.34 6.16 -2.91 -0.02 2.32 16 34 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.70 7.74 -2.39 -0.02 1.68 16 37 H 0.42 10.12 6.65 -96.74 -0.64 9.48 16 38 H 0.12 5.09 7.54 -2.39 -0.02 5.07 16 39 H 0.13 4.45 8.11 -2.39 -0.02 4.43 16 40 H 0.26 13.76 8.32 -92.70 -0.77 12.99 16 41 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 43 H 0.07 3.40 8.10 -2.39 -0.02 3.38 16 44 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -68.97 372.35 0.73 -68.23 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.36 Total: 32.40 kcal Atomic # 6 Polarization: -78.87 SS G_CDS: 3.71 Total: -75.16 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -0.63 Total: -82.09 kcal Atomic # 8 Polarization: -89.69 SS G_CDS: -4.45 Total: -94.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 104.94 SS G_CDS: -0.29 Total: 104.65 kcal Total: -68.97 0.73 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331808562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.544 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds