Wall clock time and date at job start Tue Mar 31 2020 14:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99949 * 2 1 4 4 C 1.38212 * 119.99874 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99972 * 359.80668 * 4 3 2 6 6 C 1.38221 * 119.99839 * 0.42109 * 5 4 3 7 7 C 1.50699 * 119.99879 * 179.80858 * 6 5 4 8 8 N 1.46497 * 109.47183 * 269.72817 * 7 6 5 9 9 C 1.46499 * 119.99877 * 274.99975 * 8 7 6 10 10 S 1.65598 * 120.00096 * 95.00237 * 8 7 6 11 11 O 1.42104 * 104.27721 * 333.92388 * 10 8 7 12 12 O 1.42102 * 104.27547 * 206.06991 * 10 8 7 13 13 C 1.81402 * 104.44974 * 89.99935 * 10 8 7 14 14 C 1.52997 * 109.46907 * 186.15188 * 13 10 8 15 15 C 1.50705 * 115.55059 * 299.70643 * 14 13 10 16 16 H 1.08009 * 119.99680 * 95.16657 * 15 14 13 17 17 C 1.37869 * 120.00158 * 275.16977 * 15 14 13 18 18 N 1.31511 * 120.00290 * 7.14707 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 187.14557 * 17 15 14 20 20 H 1.48504 * 109.47253 * 270.00124 * 19 17 15 21 21 H 1.48505 * 109.46884 * 29.99903 * 19 17 15 22 22 H 1.48497 * 109.47382 * 150.00107 * 19 17 15 23 23 C 1.53000 * 117.50097 * 85.38032 * 14 13 10 24 24 C 1.52998 * 117.50138 * 154.04093 * 14 13 10 25 25 C 1.38209 * 119.99732 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47646 * 270.02720 * 1 2 3 27 27 H 1.09001 * 109.47003 * 30.02893 * 1 2 3 28 28 H 1.09004 * 109.47388 * 150.02610 * 1 2 3 29 29 H 1.07998 * 120.00247 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00195 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00585 * 180.23278 * 5 4 3 32 32 H 1.08999 * 109.46780 * 149.72557 * 7 6 5 33 33 H 1.08999 * 109.46897 * 29.72789 * 7 6 5 34 34 H 1.09004 * 109.47083 * 270.00279 * 9 8 7 35 35 H 1.09004 * 109.47139 * 30.00290 * 9 8 7 36 36 H 1.08999 * 109.47238 * 149.99829 * 9 8 7 37 37 H 1.08999 * 109.46948 * 66.15003 * 13 10 8 38 38 H 1.08999 * 109.47060 * 306.14697 * 13 10 8 39 39 H 0.97006 * 119.99750 * 355.43772 * 18 17 15 40 40 H 1.09003 * 117.49780 * 215.00162 * 23 14 13 41 41 H 1.09002 * 117.49960 * 0.02562 * 23 14 13 42 42 H 1.09007 * 117.49506 * 359.97311 * 24 14 13 43 43 H 1.08998 * 117.50399 * 144.96873 * 24 14 13 44 44 H 1.08001 * 120.00365 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0051 6 6 3.5805 -1.1971 0.0004 7 6 4.3340 -2.5022 0.0010 8 7 4.5778 -2.9259 -1.3800 9 6 3.5530 -3.6795 -2.1067 10 16 6.0118 -2.5532 -2.1196 11 8 6.4575 -1.3818 -1.4499 12 8 5.6960 -2.5298 -3.5048 13 6 7.0962 -3.9564 -1.7376 14 6 8.5103 -3.6599 -2.2411 15 6 8.6362 -3.4252 -3.7244 16 1 8.6202 -2.4183 -4.1150 17 6 8.7717 -4.4955 -4.5827 18 7 8.6506 -5.7232 -4.1271 19 14 9.1274 -4.2020 -6.3929 20 1 7.8472 -4.0866 -7.1366 21 1 9.9046 -2.9460 -6.5473 22 1 9.9132 -5.3400 -6.9339 23 6 9.4363 -2.8644 -1.3188 24 6 9.6729 -4.3611 -1.5357 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3516 -0.0002 0.0093 32 1 3.7450 -3.2614 0.5155 33 1 5.2865 -2.3715 0.5145 34 1 3.7040 -4.7469 -1.9452 35 1 2.5658 -3.3931 -1.7440 36 1 3.6267 -3.4591 -3.1716 37 1 6.7165 -4.8529 -2.2277 38 1 7.1202 -4.1141 -0.6593 39 1 8.5319 -5.8784 -3.1769 40 1 10.1366 -2.1712 -1.7849 41 1 9.0383 -2.5526 -0.3531 42 1 9.4303 -5.0333 -0.7126 43 1 10.5286 -4.6530 -2.1445 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331876391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:38 Heat of formation + Delta-G solvation = -30.691124 kcal Electronic energy + Delta-G solvation = -25982.474662 eV Core-core repulsion = 22413.376322 eV Total energy + Delta-G solvation = -3569.098341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.49331 -37.08784 -36.38769 -36.17309 -35.07637 -32.79328 -31.99086 -31.30090 -28.31832 -27.62906 -26.71489 -25.05088 -24.45379 -22.11865 -21.42145 -20.65089 -19.81075 -18.31854 -17.17423 -16.89885 -16.41798 -15.87722 -15.59121 -15.22489 -14.88267 -14.44204 -13.95511 -13.82163 -13.77033 -13.73408 -13.26592 -13.07185 -12.79902 -12.64395 -12.54688 -12.37793 -12.06774 -11.87754 -11.83968 -11.30092 -11.23591 -11.19552 -11.14319 -10.99246 -10.78097 -10.76704 -10.63152 -10.34828 -10.10252 -9.72023 -8.97238 -8.80700 -8.67198 -8.56650 -8.47964 -8.29467 -6.46974 -4.25595 0.90861 1.39236 1.43947 3.28082 3.46006 3.48949 3.64042 3.84489 4.47946 4.53534 4.67475 4.76506 4.80283 4.87497 4.96532 5.00726 5.15447 5.20141 5.24285 5.38570 5.42587 5.46913 5.51991 5.59977 5.68155 5.70568 5.74291 5.79911 5.96486 6.01636 6.05728 6.09297 6.14929 6.23678 6.33719 6.51879 6.53874 6.59373 6.68151 6.73441 6.81002 7.01034 7.07840 7.15916 8.02469 8.32858 8.75957 9.53668 10.93073 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.003752 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.092893 B = 7461.338259 C = 7755.686489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.103 4.103 7 C 0.165 3.835 8 N -1.010 6.010 9 C 0.084 3.916 10 S 2.616 3.384 11 O -0.965 6.965 12 O -0.942 6.942 13 C -0.569 4.569 14 C 0.023 3.977 15 C -0.593 4.593 16 H 0.062 0.938 17 C 0.040 3.960 18 N -0.898 5.898 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.190 4.190 24 C -0.165 4.165 25 C -0.106 4.106 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.275 0.725 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 6.371 10.872 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.040 3.960 8 N -0.845 5.845 9 C -0.061 4.061 10 S 2.713 3.287 11 O -0.955 6.955 12 O -0.932 6.932 13 C -0.701 4.701 14 C 0.020 3.980 15 C -0.630 4.630 16 H 0.080 0.920 17 C -0.167 4.167 18 N -0.531 5.531 19 Si 0.893 3.107 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.227 4.227 24 C -0.204 4.204 25 C -0.125 4.125 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.148 6.340 8.906 17.099 hybrid contribution -0.150 0.047 1.876 1.883 sum -13.297 6.388 10.782 18.272 Atomic orbital electron populations 1.20751 0.91407 1.02601 1.01996 1.19851 0.95850 0.93250 1.00970 1.21025 0.94364 0.97297 1.01199 1.21186 0.94154 0.98261 1.00356 1.21512 1.01617 0.91619 0.97071 1.20271 0.93883 0.95764 1.00613 1.20083 1.00457 0.92646 0.82851 1.57920 1.33090 1.70639 1.22858 1.21525 0.91584 0.95049 0.97965 1.04991 0.73117 0.76636 0.73996 1.93454 1.81440 1.44560 1.76079 1.93529 1.81837 1.86812 1.31037 1.30167 1.13265 1.19405 1.07260 1.18547 0.84117 1.01162 0.94158 1.21408 1.57272 0.95959 0.88312 0.92010 1.25811 0.92316 0.92517 1.06052 1.70741 1.43653 1.21289 1.17414 0.83602 0.77238 0.75490 0.74382 1.20778 1.21077 1.20891 1.23039 1.05210 0.94470 0.99974 1.22795 1.02222 0.93514 1.01917 1.20887 0.93445 0.97375 1.00810 0.91461 0.91752 0.91706 0.86439 0.86057 0.83979 0.89926 0.89396 0.92929 0.91379 0.89690 0.85796 0.88312 0.91402 0.89283 0.90651 0.91230 0.89288 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.12 5.88 -104.63 -0.62 -1.74 16 3 C -0.12 -1.40 9.70 -39.59 -0.38 -1.78 16 4 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 5 C -0.10 -1.47 9.12 -39.58 -0.36 -1.83 16 6 C -0.10 -1.42 5.46 -104.62 -0.57 -1.99 16 7 C 0.17 2.15 5.39 -5.20 -0.03 2.12 16 8 N -1.01 -15.76 3.10 -123.05 -0.38 -16.14 16 9 C 0.08 1.14 10.66 59.85 0.64 1.78 16 10 S 2.62 53.55 5.01 -107.50 -0.54 53.01 16 11 O -0.96 -20.43 14.84 -57.54 -0.85 -21.29 16 12 O -0.94 -23.04 16.07 -57.54 -0.92 -23.97 16 13 C -0.57 -11.83 5.98 37.16 0.22 -11.61 16 14 C 0.02 0.54 0.95 -155.66 -0.15 0.40 16 15 C -0.59 -16.46 7.88 -34.44 -0.27 -16.73 16 16 H 0.06 1.78 7.82 -52.48 -0.41 1.37 16 17 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 18 N -0.90 -25.81 13.57 55.43 0.75 -25.06 16 19 Si 1.07 25.47 29.91 -169.99 -5.08 20.39 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.19 -4.10 9.95 -26.69 -0.27 -4.36 16 24 C -0.17 -3.68 8.74 -26.70 -0.23 -3.91 16 25 C -0.11 -1.28 9.06 -39.59 -0.36 -1.64 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.14 2.26 6.51 -52.49 -0.34 1.92 16 32 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 33 H 0.09 1.10 7.55 -51.93 -0.39 0.71 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.74 7.55 -51.93 -0.39 0.35 16 36 H 0.08 1.31 6.91 -51.93 -0.36 0.95 16 37 H 0.12 2.67 7.79 -51.92 -0.40 2.26 16 38 H 0.10 1.69 8.11 -51.92 -0.42 1.27 16 39 H 0.27 7.69 6.17 -40.82 -0.25 7.44 16 40 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 43 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 44 H 0.12 1.16 7.84 -52.49 -0.41 0.75 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -33.47 373.49 -10.73 -44.20 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.82 Total: 6.00 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: -2.51 Total: -42.77 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.37 Total: -41.20 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.78 Total: -45.26 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.54 Total: 53.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -10.73 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331876391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.508 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds