Wall clock time and date at job start Tue Mar 31 2020 14:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99949 * 2 1 4 4 C 1.38212 * 119.99874 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99972 * 359.80668 * 4 3 2 6 6 C 1.38221 * 119.99839 * 0.42109 * 5 4 3 7 7 C 1.50699 * 119.99879 * 179.80858 * 6 5 4 8 8 N 1.46497 * 109.47183 * 269.72817 * 7 6 5 9 9 C 1.46499 * 119.99877 * 274.99975 * 8 7 6 10 10 S 1.65598 * 120.00096 * 95.00237 * 8 7 6 11 11 O 1.42104 * 104.27721 * 333.92388 * 10 8 7 12 12 O 1.42102 * 104.27547 * 206.06991 * 10 8 7 13 13 C 1.81402 * 104.44974 * 89.99935 * 10 8 7 14 14 C 1.52997 * 109.46907 * 186.15188 * 13 10 8 15 15 C 1.50705 * 115.55059 * 299.70643 * 14 13 10 16 16 H 1.08009 * 119.99680 * 95.16657 * 15 14 13 17 17 C 1.37869 * 120.00158 * 275.16977 * 15 14 13 18 18 N 1.31511 * 120.00290 * 7.14707 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 187.14557 * 17 15 14 20 20 H 1.48504 * 109.47253 * 270.00124 * 19 17 15 21 21 H 1.48505 * 109.46884 * 29.99903 * 19 17 15 22 22 H 1.48497 * 109.47382 * 150.00107 * 19 17 15 23 23 C 1.53000 * 117.50097 * 85.38032 * 14 13 10 24 24 C 1.52998 * 117.50138 * 154.04093 * 14 13 10 25 25 C 1.38209 * 119.99732 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47646 * 270.02720 * 1 2 3 27 27 H 1.09001 * 109.47003 * 30.02893 * 1 2 3 28 28 H 1.09004 * 109.47388 * 150.02610 * 1 2 3 29 29 H 1.07998 * 120.00247 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00195 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00585 * 180.23278 * 5 4 3 32 32 H 1.08999 * 109.46780 * 149.72557 * 7 6 5 33 33 H 1.08999 * 109.46897 * 29.72789 * 7 6 5 34 34 H 1.09004 * 109.47083 * 270.00279 * 9 8 7 35 35 H 1.09004 * 109.47139 * 30.00290 * 9 8 7 36 36 H 1.08999 * 109.47238 * 149.99829 * 9 8 7 37 37 H 1.08999 * 109.46948 * 66.15003 * 13 10 8 38 38 H 1.08999 * 109.47060 * 306.14697 * 13 10 8 39 39 H 0.97006 * 119.99750 * 355.43772 * 18 17 15 40 40 H 1.09003 * 117.49780 * 215.00162 * 23 14 13 41 41 H 1.09002 * 117.49960 * 0.02562 * 23 14 13 42 42 H 1.09007 * 117.49506 * 359.97311 * 24 14 13 43 43 H 1.08998 * 117.50399 * 144.96873 * 24 14 13 44 44 H 1.08001 * 120.00365 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0051 6 6 3.5805 -1.1971 0.0004 7 6 4.3340 -2.5022 0.0010 8 7 4.5778 -2.9259 -1.3800 9 6 3.5530 -3.6795 -2.1067 10 16 6.0118 -2.5532 -2.1196 11 8 6.4575 -1.3818 -1.4499 12 8 5.6960 -2.5298 -3.5048 13 6 7.0962 -3.9564 -1.7376 14 6 8.5103 -3.6599 -2.2411 15 6 8.6362 -3.4252 -3.7244 16 1 8.6202 -2.4183 -4.1150 17 6 8.7717 -4.4955 -4.5827 18 7 8.6506 -5.7232 -4.1271 19 14 9.1274 -4.2020 -6.3929 20 1 7.8472 -4.0866 -7.1366 21 1 9.9046 -2.9460 -6.5473 22 1 9.9132 -5.3400 -6.9339 23 6 9.4363 -2.8644 -1.3188 24 6 9.6729 -4.3611 -1.5357 25 6 2.1980 -1.1970 0.0005 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3516 -0.0002 0.0093 32 1 3.7450 -3.2614 0.5155 33 1 5.2865 -2.3715 0.5145 34 1 3.7040 -4.7469 -1.9452 35 1 2.5658 -3.3931 -1.7440 36 1 3.6267 -3.4591 -3.1716 37 1 6.7165 -4.8529 -2.2277 38 1 7.1202 -4.1141 -0.6593 39 1 8.5319 -5.8784 -3.1769 40 1 10.1366 -2.1712 -1.7849 41 1 9.0383 -2.5526 -0.3531 42 1 9.4303 -5.0333 -0.7126 43 1 10.5286 -4.6530 -2.1445 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331876391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:37 Heat of formation + Delta-G solvation = -50.560537 kcal Electronic energy + Delta-G solvation = -25983.336265 eV Core-core repulsion = 22413.376322 eV Total energy + Delta-G solvation = -3569.959943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41967 -38.90996 -38.04655 -37.33605 -36.74279 -34.06939 -33.66630 -32.26862 -29.99272 -28.57835 -27.55741 -27.09686 -25.62684 -23.17945 -23.04208 -21.76597 -21.54237 -19.81264 -18.81104 -18.58569 -17.49031 -17.27923 -16.99691 -16.22264 -16.02536 -15.94390 -15.67031 -15.50037 -15.02616 -14.86398 -14.56063 -14.48413 -13.96835 -13.87729 -13.73632 -13.63333 -13.33416 -13.11116 -12.97515 -12.94050 -12.84453 -12.70430 -12.54105 -12.43765 -12.31435 -12.08882 -12.03083 -11.95327 -11.77251 -11.51328 -10.61615 -10.54930 -10.36735 -9.94624 -9.73129 -9.48153 -8.64526 -6.42178 -0.63610 0.41246 0.50292 1.50210 1.57230 1.75118 1.92119 2.51670 2.85461 2.95188 3.10410 3.15693 3.33542 3.66243 3.83006 3.86544 4.04327 4.05590 4.11467 4.26761 4.33879 4.36994 4.44260 4.49105 4.59649 4.61084 4.64424 4.75543 4.79831 4.80073 4.87834 4.92102 4.94494 4.99027 5.06223 5.19230 5.22693 5.34574 5.39779 5.57638 5.63140 5.68916 5.76124 5.99028 6.13444 6.15986 6.62380 7.40479 8.77516 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.003752 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.092893 B = 7461.338259 C = 7755.686489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.118 4.118 7 C 0.157 3.843 8 N -1.000 6.000 9 C 0.076 3.924 10 S 2.624 3.376 11 O -0.979 6.979 12 O -0.993 6.993 13 C -0.565 4.565 14 C -0.013 4.013 15 C -0.606 4.606 16 H 0.037 0.963 17 C -0.001 4.001 18 N -0.916 5.916 19 Si 1.094 2.906 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.178 4.178 24 C -0.158 4.158 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 6.081 12.540 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.120 4.120 7 C 0.033 3.967 8 N -0.838 5.838 9 C -0.069 4.069 10 S 2.721 3.279 11 O -0.969 6.969 12 O -0.983 6.983 13 C -0.697 4.697 14 C -0.015 4.015 15 C -0.643 4.643 16 H 0.055 0.945 17 C -0.204 4.204 18 N -0.551 5.551 19 Si 0.916 3.084 20 H -0.205 1.205 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.216 4.216 24 C -0.197 4.197 25 C -0.129 4.129 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.307 6.059 10.584 19.571 hybrid contribution 0.446 0.223 1.446 1.529 sum -14.861 6.282 12.029 20.125 Atomic orbital electron populations 1.20809 0.88966 1.03561 1.03214 1.20308 0.97695 0.92874 0.99353 1.21357 0.93849 0.98765 1.00418 1.21400 0.95204 0.98175 1.00577 1.21522 1.00840 0.93180 0.99433 1.20401 0.94868 0.95438 1.01263 1.20425 1.01361 0.93635 0.81269 1.57513 1.31493 1.70807 1.24011 1.21755 0.92483 0.96091 0.96542 1.04424 0.73968 0.76421 0.73084 1.93436 1.82296 1.45294 1.75916 1.93463 1.82908 1.87471 1.34429 1.30043 1.11152 1.18972 1.09513 1.18640 0.86340 1.03620 0.92913 1.21596 1.57007 0.94749 0.90938 0.94465 1.26835 0.92081 0.92402 1.09093 1.70813 1.45356 1.21572 1.17371 0.83255 0.77543 0.76259 0.71316 1.20479 1.19921 1.19664 1.23106 1.03914 0.94042 1.00495 1.22764 1.00530 0.94437 1.01989 1.21206 0.92791 0.98859 1.00063 0.89980 0.90884 0.90739 0.84106 0.85197 0.86242 0.85937 0.89327 0.90845 0.88047 0.92202 0.86825 0.84424 0.91769 0.90067 0.87755 0.88438 0.91372 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.10 -2.03 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 4 C -0.14 -3.46 10.05 22.27 0.22 -3.23 16 5 C -0.13 -3.87 9.12 22.27 0.20 -3.66 16 6 C -0.12 -3.05 5.46 -19.87 -0.11 -3.16 16 7 C 0.16 3.73 5.39 85.63 0.46 4.20 16 8 N -1.00 -29.73 3.10 -543.23 -1.68 -31.41 16 9 C 0.08 1.91 10.66 127.77 1.36 3.28 16 10 S 2.62 107.87 5.01 -56.49 -0.28 107.58 16 11 O -0.98 -41.99 14.84 -127.65 -1.89 -43.89 16 12 O -0.99 -50.17 16.07 -127.65 -2.05 -52.22 16 13 C -0.57 -23.07 5.98 71.98 0.43 -22.64 16 14 C -0.01 -0.63 0.95 -52.93 -0.05 -0.68 16 15 C -0.61 -34.47 7.88 25.60 0.20 -34.27 16 16 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 17 C 0.00 -0.08 5.39 84.65 0.46 0.38 16 18 N -0.92 -53.25 13.57 21.44 0.29 -52.96 16 19 Si 1.09 51.95 29.91 68.60 2.05 54.01 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C -0.18 -7.56 9.95 30.62 0.30 -7.26 16 24 C -0.16 -6.92 8.74 30.62 0.27 -6.65 16 25 C -0.11 -2.33 9.06 22.27 0.20 -2.13 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 28 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 29 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.12 3.97 6.51 -2.91 -0.02 3.95 16 32 H 0.12 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.09 2.07 7.55 -2.39 -0.02 2.06 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.86 7.55 -2.39 -0.02 1.84 16 36 H 0.06 1.83 6.91 -2.39 -0.02 1.81 16 37 H 0.11 4.87 7.79 -2.39 -0.02 4.85 16 38 H 0.14 4.38 8.11 -2.39 -0.02 4.36 16 39 H 0.27 15.34 6.17 -92.70 -0.57 14.77 16 40 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.10 3.66 8.14 -2.38 -0.02 3.65 16 43 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.14 2.20 7.84 -2.91 -0.02 2.18 16 Total: -1.00 -74.85 373.49 2.37 -72.48 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 1.17 Total: 27.53 kcal Atomic # 6 Polarization: -85.88 SS G_CDS: 4.77 Total: -81.11 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.39 Total: -84.37 kcal Atomic # 8 Polarization: -92.17 SS G_CDS: -3.95 Total: -96.11 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.05 Total: 54.01 kcal Atomic # 16 Polarization: 107.87 SS G_CDS: -0.28 Total: 107.58 kcal Total: -74.85 2.37 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331876391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.918 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds