Wall clock time and date at job start Tue Mar 31 2020 14:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 120.00055 * 2 1 4 4 C 1.38234 * 120.00023 * 180.23910 * 3 2 1 5 5 C 1.38239 * 120.00010 * 359.48263 * 4 3 2 6 6 C 1.50692 * 119.99968 * 180.27615 * 5 4 3 7 7 N 1.46499 * 109.46747 * 90.00696 * 6 5 4 8 8 C 1.46497 * 120.00470 * 85.00174 * 7 6 5 9 9 S 1.65611 * 119.99925 * 264.99485 * 7 6 5 10 10 O 1.42098 * 104.27878 * 206.07288 * 9 7 6 11 11 O 1.42096 * 104.27433 * 333.92967 * 9 7 6 12 12 C 1.81401 * 104.44736 * 90.00111 * 9 7 6 13 13 C 1.52995 * 109.47170 * 172.76462 * 12 9 7 14 14 C 1.50701 * 115.55062 * 65.16507 * 13 12 9 15 15 H 1.08001 * 119.99847 * 264.75917 * 14 13 12 16 16 C 1.37880 * 120.00145 * 84.75274 * 14 13 12 17 17 N 1.31520 * 119.99508 * 352.64189 * 16 14 13 18 18 Si 1.86795 * 120.00167 * 172.64115 * 16 14 13 19 19 H 1.48503 * 109.47058 * 59.99960 * 18 16 14 20 20 H 1.48494 * 109.47319 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47268 * 300.00288 * 18 16 14 22 22 C 1.53000 * 117.49759 * 279.49481 * 13 12 9 23 23 C 1.52994 * 117.50039 * 210.83590 * 13 12 9 24 24 C 1.38232 * 119.99660 * 0.26293 * 5 4 3 25 25 C 1.38232 * 119.99741 * 179.72546 * 2 1 3 26 26 H 1.09007 * 109.46905 * 270.27873 * 1 2 3 27 27 H 1.08998 * 109.46991 * 30.27725 * 1 2 3 28 28 H 1.08997 * 109.47190 * 150.27740 * 1 2 3 29 29 H 1.08003 * 119.99822 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.00308 * 179.76423 * 4 3 2 31 31 H 1.09005 * 109.47315 * 210.00278 * 6 5 4 32 32 H 1.08997 * 109.47626 * 330.00487 * 6 5 4 33 33 H 1.08993 * 109.47997 * 89.99666 * 8 7 6 34 34 H 1.09005 * 109.47233 * 210.00230 * 8 7 6 35 35 H 1.09001 * 109.46703 * 329.99479 * 8 7 6 36 36 H 1.09002 * 109.47136 * 292.76703 * 12 9 7 37 37 H 1.09004 * 109.47222 * 52.76386 * 12 9 7 38 38 H 0.96998 * 119.99459 * 185.02872 * 17 16 14 39 39 H 1.09001 * 117.50276 * 0.02562 * 22 13 12 40 40 H 1.09003 * 117.49759 * 145.01537 * 22 13 12 41 41 H 1.09002 * 117.50249 * 214.97969 * 23 13 12 42 42 H 1.09002 * 117.49850 * 359.97438 * 23 13 12 43 43 H 1.08000 * 119.99754 * 180.02562 * 24 5 4 44 44 H 1.07995 * 120.00191 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0050 5 6 4.2718 0.0000 0.0008 6 6 5.7787 0.0000 0.0017 7 7 6.2662 0.0061 1.3832 8 6 6.4057 -1.2545 2.1164 9 16 6.6597 1.4381 2.1161 10 8 7.6171 1.0760 3.1016 11 8 7.0058 2.2990 1.0399 12 6 5.1170 1.9853 2.8980 13 6 5.3928 3.2158 3.7642 14 6 5.8312 4.4502 3.0192 15 1 6.8828 4.6731 2.9151 16 6 4.8898 5.2949 2.4701 17 7 3.6200 4.9524 2.4694 18 14 5.4179 6.9255 1.7276 19 1 6.3698 6.6776 0.6150 20 1 4.2255 7.6426 1.2090 21 1 6.0784 7.7529 2.7689 22 6 5.9861 2.9821 5.1550 23 6 4.5246 3.4128 5.0085 24 6 3.5806 -1.1971 0.0061 25 6 2.1982 -1.1971 0.0057 26 1 -0.3633 0.0050 1.0277 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3633 -0.8924 -0.5095 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1324 -0.0088 31 1 6.1424 -0.8923 -0.5080 32 1 6.1424 0.8877 -0.5159 33 1 7.4057 -1.6583 1.9580 34 1 6.2506 -1.0751 3.1803 35 1 5.6645 -1.9681 1.7564 36 1 4.3891 2.2391 2.1273 37 1 4.7213 1.1834 3.5213 38 1 2.9673 5.5112 2.0192 39 1 6.1803 1.9517 5.4527 40 1 6.6933 3.7213 5.5312 41 1 4.2708 4.4352 5.2884 42 1 3.7566 2.6659 5.2097 43 1 4.1206 -2.1324 0.0111 44 1 1.6582 -2.1324 0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331912891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:41 Heat of formation + Delta-G solvation = -25.772155 kcal Electronic energy + Delta-G solvation = -26573.875118 eV Core-core repulsion = 23004.990079 eV Total energy + Delta-G solvation = -3568.885038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.38139 -36.75083 -36.30801 -36.15382 -35.04630 -32.66585 -32.03499 -30.77940 -28.67292 -28.12003 -26.02926 -25.45716 -23.71771 -22.51946 -21.19679 -20.67886 -19.49392 -18.27390 -17.02513 -16.54621 -16.15973 -15.70182 -15.30313 -15.06157 -14.79448 -14.67471 -14.23451 -13.83993 -13.64098 -13.58362 -13.26860 -13.12387 -12.58716 -12.57117 -12.29454 -12.03071 -11.87258 -11.76346 -11.71510 -11.27214 -11.17261 -11.05524 -11.04053 -10.93118 -10.90188 -10.68499 -10.59722 -10.44205 -10.09864 -9.70149 -8.97421 -8.83824 -8.72742 -8.54948 -8.40966 -8.04658 -6.12912 -4.23694 1.02722 1.46194 1.58702 3.32285 3.33728 3.34872 3.41063 3.95094 4.37347 4.60233 4.84407 4.87494 4.91340 5.02649 5.12207 5.14491 5.16728 5.21804 5.30452 5.51747 5.60125 5.61179 5.64181 5.70677 5.83112 5.86897 5.90037 5.90808 5.99995 6.12627 6.22394 6.28170 6.30291 6.41235 6.57172 6.64428 6.73392 6.75216 6.78403 6.87437 7.01183 7.18319 7.27308 7.40203 7.80495 8.21719 8.81074 9.46992 10.94209 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.006069 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.191286 B = 4612.452252 C = 5843.643381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.109 4.109 4 C -0.099 4.099 5 C -0.117 4.117 6 C 0.155 3.845 7 N -1.009 6.009 8 C 0.097 3.903 9 S 2.602 3.398 10 O -0.971 6.971 11 O -0.949 6.949 12 C -0.552 4.552 13 C 0.045 3.955 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.084 3.916 17 N -0.872 5.872 18 Si 0.888 3.112 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.209 4.209 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.128 4.128 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -13.388 -4.795 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.030 3.970 7 N -0.844 5.844 8 C -0.049 4.049 9 S 2.700 3.300 10 O -0.961 6.961 11 O -0.939 6.939 12 C -0.685 4.685 13 C 0.042 3.958 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.121 4.121 17 N -0.507 5.507 18 Si 0.715 3.285 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.246 4.246 23 C -0.180 4.180 24 C -0.123 4.123 25 C -0.146 4.146 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.648 -12.953 -4.851 14.304 hybrid contribution -0.723 0.679 -0.198 1.012 sum -4.371 -12.274 -5.050 13.973 Atomic orbital electron populations 1.20781 0.91509 1.02408 1.02290 1.19935 0.95919 0.93305 0.99691 1.21100 0.94234 0.97677 0.99655 1.21342 0.94653 0.98136 0.97655 1.20358 0.96350 0.93515 1.01626 1.20231 0.89054 1.04831 0.82907 1.57898 1.82185 1.22547 1.21791 1.21358 1.01337 0.86063 0.96107 1.05400 0.77863 0.72149 0.74583 1.93487 1.58310 1.82234 1.62104 1.93512 1.82526 1.64550 1.53355 1.30076 1.19616 1.06615 1.12235 1.18276 1.00709 0.91638 0.85135 1.20475 0.93341 1.05376 1.36185 0.91513 1.24927 0.94672 0.97842 0.94688 1.69984 1.01062 1.38347 1.41293 0.86699 0.78350 0.83515 0.79976 1.19469 1.21118 1.19901 1.23190 0.97442 1.00220 1.03765 1.22538 0.91041 1.00539 1.03845 1.20933 0.93995 0.97162 1.00173 1.20933 0.94129 0.97236 1.02281 0.91227 0.91568 0.91914 0.85697 0.84974 0.89752 0.87838 0.92741 0.91395 0.91560 0.84466 0.88683 0.92750 0.90801 0.89551 0.89585 0.91626 0.86392 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.09 -1.14 5.88 -104.62 -0.62 -1.75 16 3 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 4 C -0.10 -1.60 8.25 -39.58 -0.33 -1.93 16 5 C -0.12 -1.67 5.46 -104.63 -0.57 -2.24 16 6 C 0.16 2.21 5.76 -5.20 -0.03 2.18 16 7 N -1.01 -16.15 3.10 -123.06 -0.38 -16.53 16 8 C 0.10 1.24 10.22 59.85 0.61 1.85 16 9 S 2.60 54.63 5.10 -107.50 -0.55 54.08 16 10 O -0.97 -22.01 17.09 -57.54 -0.98 -22.99 16 11 O -0.95 -22.67 16.25 -57.54 -0.94 -23.60 16 12 C -0.55 -11.93 6.03 37.16 0.22 -11.71 16 13 C 0.04 1.10 1.32 -155.67 -0.21 0.89 16 14 C -0.52 -14.09 8.23 -34.44 -0.28 -14.38 16 15 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 16 C 0.08 2.26 5.38 -17.82 -0.10 2.16 16 17 N -0.87 -23.41 12.97 55.43 0.72 -22.69 16 18 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.21 -4.66 9.96 -26.70 -0.27 -4.93 16 23 C -0.14 -3.23 9.48 -26.70 -0.25 -3.48 16 24 C -0.10 -1.27 9.41 -39.58 -0.37 -1.64 16 25 C -0.13 -1.52 9.70 -39.58 -0.38 -1.90 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.13 2.38 7.61 -52.49 -0.40 1.98 16 31 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.10 1.60 6.76 -51.93 -0.35 1.25 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 35 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 36 H 0.14 3.07 6.09 -51.92 -0.32 2.75 16 37 H 0.09 1.80 8.09 -51.92 -0.42 1.38 16 38 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.12 1.14 7.84 -52.49 -0.41 0.73 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -31.72 377.25 -10.94 -42.66 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.88 Total: 6.91 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: -2.59 Total: -39.66 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.34 Total: -39.22 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -1.92 Total: -46.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.55 Total: 54.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.72 -10.94 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331912891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.888 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds