Wall clock time and date at job start Tue Mar 31 2020 14:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 120.00178 * 2 1 4 4 C 1.38211 * 120.00098 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00119 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99796 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99767 * 179.72518 * 2 1 3 8 8 C 1.50694 * 120.00007 * 359.97438 * 7 2 1 9 9 N 1.46503 * 109.47337 * 80.00130 * 8 7 2 10 10 C 1.46499 * 119.99923 * 275.00137 * 9 8 7 11 11 S 1.65603 * 119.99621 * 94.99838 * 9 8 7 12 12 O 1.42105 * 104.27331 * 206.07420 * 11 9 8 13 13 O 1.42096 * 104.27700 * 333.93040 * 11 9 8 14 14 C 1.81403 * 104.44978 * 90.00292 * 11 9 8 15 15 C 1.52993 * 109.47096 * 173.97933 * 14 11 9 16 16 C 1.50696 * 115.55206 * 65.19679 * 15 14 11 17 17 H 1.07999 * 120.00541 * 264.78565 * 16 15 14 18 18 C 1.37885 * 119.99526 * 84.78381 * 16 15 14 19 19 N 1.31504 * 120.00250 * 352.23154 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 172.22984 * 18 16 15 21 21 H 1.48506 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47119 * 120.00013 * 20 18 16 23 23 H 1.48500 * 109.47387 * 240.00226 * 20 18 16 24 24 C 1.53010 * 117.49968 * 279.53004 * 15 14 11 25 25 C 1.52998 * 117.50029 * 210.87303 * 15 14 11 26 26 H 1.09004 * 109.47236 * 90.00144 * 1 2 3 27 27 H 1.08995 * 109.47671 * 210.00497 * 1 2 3 28 28 H 1.09002 * 109.47210 * 330.00469 * 1 2 3 29 29 H 1.08006 * 119.99934 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99823 * 179.97438 * 4 3 2 31 31 H 1.07993 * 119.99902 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00237 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47144 * 200.00237 * 8 7 2 34 34 H 1.08999 * 109.47209 * 319.99917 * 8 7 2 35 35 H 1.08994 * 109.46986 * 89.99762 * 10 9 8 36 36 H 1.08998 * 109.46637 * 209.99737 * 10 9 8 37 37 H 1.08998 * 109.47176 * 329.99509 * 10 9 8 38 38 H 1.08994 * 109.47192 * 293.98349 * 14 11 9 39 39 H 1.09007 * 109.46830 * 53.97983 * 14 11 9 40 40 H 0.96999 * 120.00218 * 185.01989 * 19 18 16 41 41 H 1.08998 * 117.49635 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49640 * 145.02235 * 24 15 14 43 43 H 1.08999 * 117.49963 * 214.97912 * 25 15 14 44 44 H 1.09011 * 117.49832 * 359.97206 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0126 9 7 0.9921 -2.8119 -1.3459 10 6 -0.2654 -2.2500 -1.8452 11 16 1.9022 -3.7972 -2.3171 12 8 1.5602 -3.4001 -3.6380 13 8 3.2272 -3.6458 -1.8265 14 6 1.2833 -5.4676 -1.9742 15 6 1.9476 -6.4632 -2.9271 16 6 3.4356 -6.6311 -2.7580 17 1 4.1168 -6.0628 -3.3740 18 6 3.9276 -7.5103 -1.8166 19 7 3.1088 -8.0871 -0.9643 20 14 5.7570 -7.8822 -1.7519 21 1 6.4568 -7.1103 -2.8102 22 1 6.2937 -7.4968 -0.4220 23 1 5.9750 -9.3345 -1.9719 24 6 1.3813 -6.5701 -4.3445 25 6 1.1396 -7.6962 -3.3364 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0001 31 1 5.3516 -0.0001 0.0005 32 1 4.1205 -2.1323 0.0001 33 1 2.0992 -3.2977 0.3678 34 1 0.5813 -2.4197 0.6731 35 1 -0.0696 -1.2910 -2.3250 36 1 -0.7073 -2.9349 -2.5689 37 1 -0.9547 -2.1061 -1.0133 38 1 1.5182 -5.7378 -0.9447 39 1 0.2032 -5.4916 -2.1187 40 1 3.4621 -8.6484 -0.2565 41 1 0.5352 -5.9313 -4.5979 42 1 2.0849 -6.7622 -5.1544 43 1 1.6843 -8.6288 -3.4836 44 1 0.1348 -7.7984 -2.9263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331931839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:44 Heat of formation + Delta-G solvation = -20.170925 kcal Electronic energy + Delta-G solvation = -26344.133092 eV Core-core repulsion = 22775.490941 eV Total energy + Delta-G solvation = -3568.642151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55589 -36.76512 -36.27058 -36.07503 -35.00125 -32.59166 -32.05348 -31.37249 -28.17225 -28.01207 -26.12957 -25.49767 -24.55832 -21.88382 -21.22314 -20.68038 -19.54198 -18.21126 -17.04222 -16.59961 -16.29440 -15.92552 -15.27041 -15.19354 -14.76196 -14.67787 -14.36789 -13.93800 -13.75213 -13.25014 -13.11931 -13.07729 -12.79008 -12.73627 -12.14615 -12.00582 -11.95514 -11.82615 -11.67856 -11.24741 -11.14818 -11.05113 -11.01565 -10.96156 -10.85020 -10.71074 -10.56569 -10.45516 -10.11009 -9.71029 -8.97195 -8.88231 -8.65887 -8.58215 -8.48306 -8.06470 -6.15063 -4.25257 1.00369 1.47254 1.55324 3.27473 3.35210 3.36355 3.42972 3.93515 4.36426 4.63938 4.81042 4.88772 4.89835 4.91510 5.06502 5.12738 5.18683 5.20666 5.28224 5.44082 5.48820 5.57878 5.64365 5.67718 5.70044 5.82475 5.88122 5.93882 5.95651 6.08622 6.18499 6.25503 6.31318 6.37931 6.58099 6.60578 6.69101 6.70981 6.80094 6.85686 6.98367 7.16859 7.24168 7.37972 7.79766 8.19820 8.80658 9.45832 10.92746 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.004706 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.401098 B = 5948.034040 C = 7024.510199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.085 4.085 7 C -0.107 4.107 8 C 0.163 3.837 9 N -1.008 6.008 10 C 0.093 3.907 11 S 2.605 3.395 12 O -0.971 6.971 13 O -0.943 6.943 14 C -0.555 4.555 15 C 0.043 3.957 16 C -0.514 4.514 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.208 4.208 25 C -0.142 4.142 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 13.856 4.696 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.108 4.108 8 C 0.038 3.962 9 N -0.843 5.843 10 C -0.053 4.053 11 S 2.703 3.297 12 O -0.961 6.961 13 O -0.933 6.933 14 C -0.687 4.687 15 C 0.040 3.960 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.511 5.511 20 Si 0.718 3.282 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.246 4.246 25 C -0.181 4.181 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.355 14.004 4.244 15.953 hybrid contribution 0.489 -0.635 0.536 0.964 sum -5.867 13.368 4.780 15.362 Atomic orbital electron populations 1.21121 0.91707 1.02443 1.02696 1.19725 0.95801 0.92633 0.99170 1.20925 0.94274 0.97148 1.02726 1.21106 0.94316 0.97893 1.00269 1.21165 0.99948 0.92518 1.01332 1.21399 0.93753 0.99088 0.96131 1.20139 0.94138 0.94997 1.01572 1.20124 0.98323 0.94304 0.83422 1.57959 1.35933 1.64255 1.26175 1.21607 0.85225 0.99278 0.99189 1.05376 0.74364 0.76500 0.73474 1.93488 1.84534 1.81622 1.36478 1.93513 1.34162 1.85436 1.80166 1.30034 1.07707 1.19638 1.11366 1.18299 0.94178 0.94669 0.88814 1.20557 0.88331 1.24757 1.21439 0.91320 1.24945 0.98015 0.94439 0.94871 1.69982 1.34498 1.31287 1.15286 0.86529 0.85112 0.78006 0.78514 1.19219 1.20625 1.20849 1.23195 1.02816 1.04030 0.94541 1.22556 0.98955 0.94059 1.02506 0.90505 0.91147 0.92026 0.86509 0.86501 0.86169 0.84397 0.88925 0.89768 0.92723 0.91421 0.91278 0.84897 0.88562 0.92783 0.90744 0.89527 0.89581 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.01 36.01 0.29 -0.89 16 2 C -0.07 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.13 -1.58 9.70 -39.59 -0.38 -1.96 16 4 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 6 C -0.09 -1.33 9.12 -39.58 -0.36 -1.69 16 7 C -0.11 -1.55 5.46 -104.63 -0.57 -2.12 16 8 C 0.16 2.27 4.98 -5.20 -0.03 2.25 16 9 N -1.01 -15.53 3.10 -123.06 -0.38 -15.91 16 10 C 0.09 1.14 8.38 59.85 0.50 1.64 16 11 S 2.61 52.90 5.06 -107.50 -0.54 52.35 16 12 O -0.97 -21.67 17.09 -57.54 -0.98 -22.65 16 13 O -0.94 -21.70 15.42 -57.54 -0.89 -22.59 16 14 C -0.55 -11.58 6.03 37.15 0.22 -11.36 16 15 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16 16 C -0.51 -13.96 8.18 -34.44 -0.28 -14.25 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 19 N -0.87 -23.85 12.98 55.43 0.72 -23.13 16 20 Si 0.89 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.21 -4.60 9.96 -26.69 -0.27 -4.86 16 25 C -0.14 -3.22 9.49 -26.70 -0.25 -3.48 16 26 H 0.08 0.71 5.86 -51.93 -0.30 0.40 16 27 H 0.07 0.61 5.24 -51.93 -0.27 0.34 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.14 2.31 7.38 -52.49 -0.39 1.93 16 33 H 0.09 1.35 7.47 -51.93 -0.39 0.96 16 34 H 0.08 0.90 6.23 -51.93 -0.32 0.58 16 35 H 0.05 0.67 6.80 -51.93 -0.35 0.31 16 36 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 37 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 38 H 0.13 2.87 8.14 -51.93 -0.42 2.45 16 39 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 40 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -32.47 366.91 -10.95 -43.41 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.54 Total: 6.05 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: -2.84 Total: -39.30 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.34 Total: -39.04 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.87 Total: -45.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.54 Total: 52.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.47 -10.95 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331931839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.241 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds