Wall clock time and date at job start Tue Mar 31 2020 14:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 120.00178 * 2 1 4 4 C 1.38211 * 120.00098 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00119 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99796 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99767 * 179.72518 * 2 1 3 8 8 C 1.50694 * 120.00007 * 359.97438 * 7 2 1 9 9 N 1.46503 * 109.47337 * 80.00130 * 8 7 2 10 10 C 1.46499 * 119.99923 * 275.00137 * 9 8 7 11 11 S 1.65603 * 119.99621 * 94.99838 * 9 8 7 12 12 O 1.42105 * 104.27331 * 206.07420 * 11 9 8 13 13 O 1.42096 * 104.27700 * 333.93040 * 11 9 8 14 14 C 1.81403 * 104.44978 * 90.00292 * 11 9 8 15 15 C 1.52993 * 109.47096 * 173.97933 * 14 11 9 16 16 C 1.50696 * 115.55206 * 65.19679 * 15 14 11 17 17 H 1.07999 * 120.00541 * 264.78565 * 16 15 14 18 18 C 1.37885 * 119.99526 * 84.78381 * 16 15 14 19 19 N 1.31504 * 120.00250 * 352.23154 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 172.22984 * 18 16 15 21 21 H 1.48506 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47119 * 120.00013 * 20 18 16 23 23 H 1.48500 * 109.47387 * 240.00226 * 20 18 16 24 24 C 1.53010 * 117.49968 * 279.53004 * 15 14 11 25 25 C 1.52998 * 117.50029 * 210.87303 * 15 14 11 26 26 H 1.09004 * 109.47236 * 90.00144 * 1 2 3 27 27 H 1.08995 * 109.47671 * 210.00497 * 1 2 3 28 28 H 1.09002 * 109.47210 * 330.00469 * 1 2 3 29 29 H 1.08006 * 119.99934 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99823 * 179.97438 * 4 3 2 31 31 H 1.07993 * 119.99902 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00237 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47144 * 200.00237 * 8 7 2 34 34 H 1.08999 * 109.47209 * 319.99917 * 8 7 2 35 35 H 1.08994 * 109.46986 * 89.99762 * 10 9 8 36 36 H 1.08998 * 109.46637 * 209.99737 * 10 9 8 37 37 H 1.08998 * 109.47176 * 329.99509 * 10 9 8 38 38 H 1.08994 * 109.47192 * 293.98349 * 14 11 9 39 39 H 1.09007 * 109.46830 * 53.97983 * 14 11 9 40 40 H 0.96999 * 120.00218 * 185.01989 * 19 18 16 41 41 H 1.08998 * 117.49635 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49640 * 145.02235 * 24 15 14 43 43 H 1.08999 * 117.49963 * 214.97912 * 25 15 14 44 44 H 1.09011 * 117.49832 * 359.97206 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0126 9 7 0.9921 -2.8119 -1.3459 10 6 -0.2654 -2.2500 -1.8452 11 16 1.9022 -3.7972 -2.3171 12 8 1.5602 -3.4001 -3.6380 13 8 3.2272 -3.6458 -1.8265 14 6 1.2833 -5.4676 -1.9742 15 6 1.9476 -6.4632 -2.9271 16 6 3.4356 -6.6311 -2.7580 17 1 4.1168 -6.0628 -3.3740 18 6 3.9276 -7.5103 -1.8166 19 7 3.1088 -8.0871 -0.9643 20 14 5.7570 -7.8822 -1.7519 21 1 6.4568 -7.1103 -2.8102 22 1 6.2937 -7.4968 -0.4220 23 1 5.9750 -9.3345 -1.9719 24 6 1.3813 -6.5701 -4.3445 25 6 1.1396 -7.6962 -3.3364 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0001 31 1 5.3516 -0.0001 0.0005 32 1 4.1205 -2.1323 0.0001 33 1 2.0992 -3.2977 0.3678 34 1 0.5813 -2.4197 0.6731 35 1 -0.0696 -1.2910 -2.3250 36 1 -0.7073 -2.9349 -2.5689 37 1 -0.9547 -2.1061 -1.0133 38 1 1.5182 -5.7378 -0.9447 39 1 0.2032 -5.4916 -2.1187 40 1 3.4621 -8.6484 -0.2565 41 1 0.5352 -5.9313 -4.5979 42 1 2.0849 -6.7622 -5.1544 43 1 1.6843 -8.6288 -3.4836 44 1 0.1348 -7.7984 -2.9263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331931839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:43 Heat of formation + Delta-G solvation = -39.600091 kcal Electronic energy + Delta-G solvation = -26344.975604 eV Core-core repulsion = 22775.490941 eV Total energy + Delta-G solvation = -3569.484663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54155 -38.58040 -37.95050 -37.21338 -36.66630 -34.10188 -33.50982 -32.39333 -29.85132 -28.97121 -27.52247 -27.03113 -25.68617 -23.00940 -22.88566 -21.74299 -21.34254 -19.69985 -18.45132 -18.36242 -17.51688 -17.20132 -16.79476 -16.60469 -16.25019 -15.89046 -15.77869 -15.58424 -15.01463 -14.77330 -14.15425 -14.04519 -13.83546 -13.79863 -13.70556 -13.65162 -13.23081 -13.12081 -12.92289 -12.87630 -12.85532 -12.83575 -12.51187 -12.45457 -12.24067 -12.15650 -11.95456 -11.82784 -11.72804 -11.52321 -10.88980 -10.56866 -10.17669 -9.81942 -9.66034 -9.43228 -8.21036 -6.35148 -0.53879 0.45156 0.53679 1.34760 1.38302 1.49350 1.99903 2.38014 2.90070 3.03025 3.07971 3.35863 3.42796 3.75835 3.91100 3.96750 4.07466 4.14139 4.24042 4.27069 4.42889 4.48024 4.49862 4.57440 4.64374 4.67449 4.73124 4.82293 4.88495 4.94849 4.95591 5.01669 5.03184 5.07129 5.19514 5.22145 5.42320 5.45672 5.56864 5.61760 5.67741 5.68922 5.70645 5.82840 6.19463 6.21406 6.70791 7.36973 8.86353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.004706 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.401098 B = 5948.034040 C = 7024.510199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.135 4.135 4 C -0.118 4.118 5 C -0.149 4.149 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.159 3.841 9 N -0.998 5.998 10 C 0.079 3.921 11 S 2.617 3.383 12 O -0.995 6.995 13 O -0.981 6.981 14 C -0.552 4.552 15 C 0.009 3.991 16 C -0.531 4.531 17 H 0.046 0.954 18 C 0.045 3.955 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.271 1.271 24 C -0.198 4.198 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.266 0.734 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 15.732 5.341 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.153 4.153 4 C -0.136 4.136 5 C -0.167 4.167 6 C -0.137 4.137 7 C -0.127 4.127 8 C 0.034 3.966 9 N -0.836 5.836 10 C -0.065 4.065 11 S 2.714 3.286 12 O -0.985 6.985 13 O -0.971 6.971 14 C -0.684 4.684 15 C 0.007 3.993 16 C -0.569 4.569 17 H 0.064 0.936 18 C -0.158 4.158 19 N -0.528 5.528 20 Si 0.760 3.240 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.196 1.196 24 C -0.235 4.235 25 C -0.177 4.177 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.705 15.864 4.877 18.741 hybrid contribution 1.200 -1.121 0.341 1.677 sum -7.505 14.743 5.218 17.347 Atomic orbital electron populations 1.21213 0.89143 1.04122 1.03560 1.20123 0.97730 0.91935 0.97812 1.21374 0.94324 0.98256 1.01315 1.21462 0.94970 0.98162 0.99005 1.21358 1.00620 0.92757 1.01924 1.21389 0.94895 0.98752 0.98619 1.20258 0.93704 0.96119 1.02635 1.20326 0.99602 0.93692 0.82952 1.57529 1.36681 1.63148 1.26258 1.21995 0.84264 0.99224 1.01057 1.04711 0.73981 0.76601 0.73262 1.93443 1.84850 1.81949 1.38283 1.93469 1.37040 1.85921 1.80713 1.29914 1.09564 1.19284 1.09648 1.18437 0.93200 0.96629 0.91004 1.20688 0.90159 1.24738 1.21294 0.93610 1.25481 1.01073 0.94479 0.94787 1.70017 1.35527 1.31690 1.15574 0.85870 0.81606 0.78231 0.78339 1.19925 1.20112 1.19600 1.23239 1.03099 1.03683 0.93457 1.22517 0.99512 0.92949 1.02718 0.89813 0.90060 0.89868 0.83406 0.83755 0.85483 0.87324 0.90756 0.85814 0.92482 0.91062 0.87113 0.86057 0.85148 0.92510 0.88317 0.90070 0.91555 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.01 71.24 0.57 -1.26 16 2 C -0.08 -1.71 5.88 -19.87 -0.12 -1.82 16 3 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 4 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 5 C -0.15 -4.12 10.05 22.27 0.22 -3.90 16 6 C -0.12 -3.84 9.12 22.27 0.20 -3.64 16 7 C -0.13 -3.58 5.46 -19.87 -0.11 -3.69 16 8 C 0.16 4.27 4.98 85.63 0.43 4.70 16 9 N -1.00 -29.37 3.10 -543.25 -1.68 -31.05 16 10 C 0.08 1.68 8.38 127.77 1.07 2.75 16 11 S 2.62 106.94 5.06 -56.49 -0.29 106.66 16 12 O -0.99 -44.23 17.09 -127.65 -2.18 -46.41 16 13 O -0.98 -47.38 15.42 -127.65 -1.97 -49.35 16 14 C -0.55 -22.82 6.03 71.98 0.43 -22.39 16 15 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 16 C -0.53 -29.74 8.18 25.60 0.21 -29.53 16 17 H 0.05 2.69 7.83 -2.91 -0.02 2.67 16 18 C 0.04 2.47 5.38 84.66 0.46 2.92 16 19 N -0.89 -49.19 12.98 21.45 0.28 -48.91 16 20 Si 0.93 44.41 29.55 68.60 2.03 46.44 16 21 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 C -0.20 -8.58 9.96 30.62 0.30 -8.28 16 25 C -0.14 -6.20 9.49 30.62 0.29 -5.91 16 26 H 0.08 1.16 5.86 -2.38 -0.01 1.15 16 27 H 0.08 1.01 5.24 -2.39 -0.01 1.00 16 28 H 0.08 0.89 8.09 -2.39 -0.02 0.88 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.11 4.05 7.38 -2.91 -0.02 4.03 16 33 H 0.07 2.25 7.47 -2.39 -0.02 2.23 16 34 H 0.12 2.27 6.23 -2.39 -0.01 2.26 16 35 H 0.06 1.21 6.80 -2.39 -0.02 1.20 16 36 H 0.07 1.49 7.79 -2.39 -0.02 1.47 16 37 H 0.11 1.44 6.44 -2.39 -0.02 1.43 16 38 H 0.12 5.29 8.14 -2.39 -0.02 5.27 16 39 H 0.13 4.34 8.09 -2.39 -0.02 4.32 16 40 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.08 3.55 8.14 -2.39 -0.02 3.54 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 Total: -1.00 -72.44 366.91 1.51 -70.93 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.99 Total: 26.38 kcal Atomic # 6 Polarization: -79.01 SS G_CDS: 4.33 Total: -74.68 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.41 Total: -79.97 kcal Atomic # 8 Polarization: -91.61 SS G_CDS: -4.15 Total: -95.76 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 106.94 SS G_CDS: -0.29 Total: 106.66 kcal Total: -72.44 1.51 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331931839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.334 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds