Wall clock time and date at job start Tue Mar 31 2020 14:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 120.00508 * 2 1 4 4 C 1.38231 * 120.00078 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00194 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46890 * 340.00292 * 6 5 4 8 8 C 1.53003 * 109.46855 * 99.99904 * 6 5 4 9 9 N 1.46491 * 109.47043 * 219.99765 * 6 5 4 10 10 S 1.65601 * 120.00069 * 144.99792 * 9 6 5 11 11 O 1.42098 * 104.27794 * 308.93453 * 10 9 6 12 12 O 1.42098 * 104.27820 * 181.06901 * 10 9 6 13 13 C 1.81407 * 104.44612 * 65.00248 * 10 9 6 14 14 C 1.53000 * 109.47091 * 174.34737 * 13 10 9 15 15 C 1.50702 * 115.55070 * 295.23001 * 14 13 10 16 16 H 1.07993 * 120.00226 * 95.16158 * 15 14 13 17 17 C 1.37882 * 119.99822 * 274.88891 * 15 14 13 18 18 N 1.31515 * 119.99551 * 6.44628 * 17 15 14 19 19 Si 1.86792 * 120.00141 * 186.44700 * 17 15 14 20 20 H 1.48500 * 109.47156 * 89.99648 * 19 17 15 21 21 H 1.48499 * 109.47017 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.47240 * 330.00108 * 19 17 15 23 23 C 1.52998 * 117.49864 * 80.89449 * 14 13 10 24 24 C 1.52998 * 117.50210 * 149.55494 * 14 13 10 25 25 C 1.38240 * 119.99687 * 0.25047 * 5 4 3 26 26 C 1.38231 * 120.00062 * 359.49713 * 25 5 4 27 27 H 1.08995 * 109.47475 * 89.99188 * 1 2 3 28 28 H 1.08995 * 109.47331 * 210.00482 * 1 2 3 29 29 H 1.09011 * 109.46568 * 329.99643 * 1 2 3 30 30 H 1.07996 * 119.99819 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.00102 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46854 * 180.02562 * 8 6 5 33 33 H 1.09005 * 109.47225 * 299.99924 * 8 6 5 34 34 H 1.09000 * 109.47549 * 60.00300 * 8 6 5 35 35 H 0.97001 * 120.00549 * 324.99980 * 9 6 5 36 36 H 1.08995 * 109.46970 * 54.34720 * 13 10 9 37 37 H 1.09000 * 109.46775 * 294.34286 * 13 10 9 38 38 H 0.97003 * 119.99746 * 185.04386 * 18 17 15 39 39 H 1.09007 * 117.50251 * 215.00100 * 23 14 13 40 40 H 1.09003 * 117.50010 * 0.02562 * 23 14 13 41 41 H 1.09008 * 117.49227 * 359.97438 * 24 14 13 42 42 H 1.08996 * 117.50141 * 144.97145 * 24 14 13 43 43 H 1.08001 * 119.99938 * 179.72670 * 25 5 4 44 44 H 1.07997 * 120.00197 * 180.22531 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0003 -0.0028 7 1 6.1418 0.9655 -0.3541 8 6 6.2898 -0.2515 1.4174 9 7 6.2663 -1.0580 -0.8914 10 16 7.6492 -0.8271 -1.7726 11 8 7.4466 0.4205 -2.4220 12 8 7.7932 -2.0272 -2.5197 13 6 8.9616 -0.6909 -0.5278 14 6 10.3209 -0.6142 -1.2260 15 6 10.7251 -1.8435 -1.9983 16 1 10.5312 -1.9029 -3.0590 17 6 11.3477 -2.8901 -1.3517 18 7 11.4751 -2.8719 -0.0429 19 14 12.0102 -4.3338 -2.3346 20 1 13.4174 -4.0633 -2.7241 21 1 11.9538 -5.5645 -1.5056 22 1 11.1860 -4.5212 -3.5556 23 6 10.7535 0.7437 -1.7826 24 6 11.4288 0.1791 -0.5303 25 6 3.5804 -1.1974 -0.0074 26 6 2.1981 -1.1973 -0.0016 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5140 30 1 1.6584 2.1324 0.0004 31 1 4.1207 2.1323 -0.0010 32 1 7.3798 -0.2511 1.4166 33 1 5.9270 0.5355 2.0786 34 1 5.9267 -1.2173 1.7687 35 1 5.7791 -1.8937 -0.9636 36 1 8.9366 -1.5645 0.1236 37 1 8.8070 0.2099 0.0662 38 1 11.9766 -3.5709 0.4054 39 1 11.3306 0.7479 -2.7073 40 1 10.0700 1.5825 -1.6509 41 1 11.1891 0.6467 0.4248 42 1 12.4500 -0.1884 -0.6307 43 1 4.1204 -2.1327 -0.0127 44 1 1.6581 -2.1325 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331961399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:31 Heat of formation + Delta-G solvation = -35.141423 kcal Electronic energy + Delta-G solvation = -25539.332861 eV Core-core repulsion = 21970.041541 eV Total energy + Delta-G solvation = -3569.291320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.76094 -36.76752 -36.53458 -36.05757 -35.07122 -32.37872 -32.01752 -31.04766 -29.60674 -28.21591 -26.79766 -25.42588 -23.12982 -22.65611 -21.23405 -20.58911 -19.72694 -18.66455 -17.36655 -16.70299 -16.35832 -15.47431 -15.32450 -15.07723 -14.87212 -14.62614 -14.24955 -14.03750 -13.84384 -13.58901 -13.50372 -13.37728 -13.10215 -12.44672 -12.40806 -11.98364 -11.89448 -11.77687 -11.67360 -11.37474 -11.30550 -11.17603 -11.06787 -11.00336 -10.89715 -10.74933 -10.55873 -10.47143 -10.10424 -9.75341 -9.30264 -9.01879 -8.94967 -8.60758 -8.53768 -8.10320 -6.12693 -4.21469 1.03813 1.24831 1.31050 3.30815 3.37225 3.39921 3.46250 3.66763 4.40148 4.48568 4.57028 4.68271 4.77304 4.90171 5.00163 5.04377 5.14758 5.18081 5.20465 5.27880 5.35039 5.36216 5.47359 5.56041 5.59279 5.67780 5.79310 5.88812 5.94159 5.97203 6.12969 6.17632 6.26224 6.32700 6.36356 6.46294 6.58557 6.60575 6.69278 6.89602 6.97639 7.22330 7.28850 7.38272 7.83590 8.21349 8.85132 9.49298 10.95727 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.003377 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.700529 B = 8288.340057 C = 8708.489856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.083 4.083 6 C 0.186 3.814 7 H 0.098 0.902 8 C -0.175 4.175 9 N -1.125 6.125 10 S 2.603 3.397 11 O -0.978 6.978 12 O -0.944 6.944 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.506 4.506 16 H 0.070 0.930 17 C 0.079 3.921 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.214 4.214 24 C -0.138 4.138 25 C -0.105 4.105 26 C -0.119 4.119 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.322 6.198 5.378 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.126 4.126 5 C -0.084 4.084 6 C 0.078 3.922 7 H 0.116 0.884 8 C -0.234 4.234 9 N -0.881 5.881 10 S 2.700 3.300 11 O -0.968 6.968 12 O -0.934 6.934 13 C -0.687 4.687 14 C 0.040 3.960 15 C -0.543 4.543 16 H 0.088 0.912 17 C -0.125 4.125 18 N -0.512 5.512 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.252 4.252 24 C -0.177 4.177 25 C -0.124 4.124 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.154 0.846 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.141 0.859 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.204 6.260 4.588 18.873 hybrid contribution 0.447 -1.185 0.396 1.327 sum -16.757 5.075 4.983 18.204 Atomic orbital electron populations 1.20779 0.91356 1.02595 1.02255 1.19925 0.95989 0.93304 1.00094 1.20985 0.94027 0.97491 1.01224 1.21042 0.94204 0.97583 0.99731 1.19934 0.94880 0.93597 1.00020 1.19637 0.90372 0.91592 0.90585 0.88405 1.22464 1.02517 1.02914 0.95465 1.56145 1.44674 1.25297 1.62029 1.05247 0.74312 0.74332 0.76091 1.93497 1.84783 1.45993 1.72550 1.93570 1.85051 1.46783 1.67980 1.30077 1.14119 1.09131 1.15346 1.18313 0.88715 0.90828 0.98129 1.20567 1.40463 0.98481 0.94824 0.91173 1.24933 0.95256 0.97626 0.94727 1.70013 1.39399 1.34413 1.07411 0.86598 0.79273 0.81761 0.80697 1.20544 1.21102 1.19102 1.23254 1.05469 0.97754 0.98707 1.22528 0.98861 1.03120 0.93238 1.20950 0.94080 0.97803 0.99559 1.21004 0.94044 0.97539 1.01129 0.91258 0.91657 0.91669 0.86071 0.85651 0.90950 0.91351 0.91561 0.75552 0.84595 0.88304 0.92876 0.89476 0.90664 0.91520 0.89534 0.85865 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 4 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 5 C -0.08 -1.01 4.96 -104.62 -0.52 -1.53 16 6 C 0.19 2.43 3.01 -69.09 -0.21 2.23 16 7 H 0.10 1.29 7.34 -51.93 -0.38 0.91 16 8 C -0.17 -2.01 9.46 37.16 0.35 -1.65 16 9 N -1.13 -17.25 5.31 -5.89 -0.03 -17.28 16 10 S 2.60 52.58 5.33 -107.50 -0.57 52.00 16 11 O -0.98 -21.39 17.39 -57.54 -1.00 -22.39 16 12 O -0.94 -22.72 17.10 -57.54 -0.98 -23.71 16 13 C -0.55 -11.35 4.88 37.16 0.18 -11.17 16 14 C 0.04 1.02 1.34 -155.66 -0.21 0.81 16 15 C -0.51 -13.80 7.66 -34.44 -0.26 -14.07 16 16 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 17 C 0.08 2.14 5.39 -17.82 -0.10 2.05 16 18 N -0.88 -23.91 12.93 55.43 0.72 -23.20 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.21 -4.65 9.96 -26.70 -0.27 -4.92 16 24 C -0.14 -3.10 9.44 -26.70 -0.25 -3.36 16 25 C -0.11 -1.21 9.16 -39.58 -0.36 -1.57 16 26 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.09 -51.92 -0.42 -0.03 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.19 8.04 -52.48 -0.42 0.77 16 32 H 0.07 0.88 5.97 -51.93 -0.31 0.57 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 5.63 7.03 -34.47 -0.24 5.39 16 36 H 0.14 2.87 8.14 -51.93 -0.42 2.45 16 37 H 0.10 1.69 7.11 -51.92 -0.37 1.33 16 38 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 43 H 0.12 1.28 6.80 -52.49 -0.36 0.92 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -33.00 374.99 -10.99 -43.99 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.69 Total: 8.43 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: -3.05 Total: -39.88 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.69 Total: -40.48 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.98 Total: -46.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.57 Total: 52.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.00 -10.99 -43.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331961399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.846 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds