Wall clock time and date at job start Tue Mar 31 2020 14:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 120.00508 * 2 1 4 4 C 1.38231 * 120.00078 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.00225 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00194 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46890 * 340.00292 * 6 5 4 8 8 C 1.53003 * 109.46855 * 99.99904 * 6 5 4 9 9 N 1.46491 * 109.47043 * 219.99765 * 6 5 4 10 10 S 1.65601 * 120.00069 * 144.99792 * 9 6 5 11 11 O 1.42098 * 104.27794 * 308.93453 * 10 9 6 12 12 O 1.42098 * 104.27820 * 181.06901 * 10 9 6 13 13 C 1.81407 * 104.44612 * 65.00248 * 10 9 6 14 14 C 1.53000 * 109.47091 * 174.34737 * 13 10 9 15 15 C 1.50702 * 115.55070 * 295.23001 * 14 13 10 16 16 H 1.07993 * 120.00226 * 95.16158 * 15 14 13 17 17 C 1.37882 * 119.99822 * 274.88891 * 15 14 13 18 18 N 1.31515 * 119.99551 * 6.44628 * 17 15 14 19 19 Si 1.86792 * 120.00141 * 186.44700 * 17 15 14 20 20 H 1.48500 * 109.47156 * 89.99648 * 19 17 15 21 21 H 1.48499 * 109.47017 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.47240 * 330.00108 * 19 17 15 23 23 C 1.52998 * 117.49864 * 80.89449 * 14 13 10 24 24 C 1.52998 * 117.50210 * 149.55494 * 14 13 10 25 25 C 1.38240 * 119.99687 * 0.25047 * 5 4 3 26 26 C 1.38231 * 120.00062 * 359.49713 * 25 5 4 27 27 H 1.08995 * 109.47475 * 89.99188 * 1 2 3 28 28 H 1.08995 * 109.47331 * 210.00482 * 1 2 3 29 29 H 1.09011 * 109.46568 * 329.99643 * 1 2 3 30 30 H 1.07996 * 119.99819 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.00102 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46854 * 180.02562 * 8 6 5 33 33 H 1.09005 * 109.47225 * 299.99924 * 8 6 5 34 34 H 1.09000 * 109.47549 * 60.00300 * 8 6 5 35 35 H 0.97001 * 120.00549 * 324.99980 * 9 6 5 36 36 H 1.08995 * 109.46970 * 54.34720 * 13 10 9 37 37 H 1.09000 * 109.46775 * 294.34286 * 13 10 9 38 38 H 0.97003 * 119.99746 * 185.04386 * 18 17 15 39 39 H 1.09007 * 117.50251 * 215.00100 * 23 14 13 40 40 H 1.09003 * 117.50010 * 0.02562 * 23 14 13 41 41 H 1.09008 * 117.49227 * 359.97438 * 24 14 13 42 42 H 1.08996 * 117.50141 * 144.97145 * 24 14 13 43 43 H 1.08001 * 119.99938 * 179.72670 * 25 5 4 44 44 H 1.07997 * 120.00197 * 180.22531 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0003 -0.0028 7 1 6.1418 0.9655 -0.3541 8 6 6.2898 -0.2515 1.4174 9 7 6.2663 -1.0580 -0.8914 10 16 7.6492 -0.8271 -1.7726 11 8 7.4466 0.4205 -2.4220 12 8 7.7932 -2.0272 -2.5197 13 6 8.9616 -0.6909 -0.5278 14 6 10.3209 -0.6142 -1.2260 15 6 10.7251 -1.8435 -1.9983 16 1 10.5312 -1.9029 -3.0590 17 6 11.3477 -2.8901 -1.3517 18 7 11.4751 -2.8719 -0.0429 19 14 12.0102 -4.3338 -2.3346 20 1 13.4174 -4.0633 -2.7241 21 1 11.9538 -5.5645 -1.5056 22 1 11.1860 -4.5212 -3.5556 23 6 10.7535 0.7437 -1.7826 24 6 11.4288 0.1791 -0.5303 25 6 3.5804 -1.1974 -0.0074 26 6 2.1981 -1.1973 -0.0016 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5140 30 1 1.6584 2.1324 0.0004 31 1 4.1207 2.1323 -0.0010 32 1 7.3798 -0.2511 1.4166 33 1 5.9270 0.5355 2.0786 34 1 5.9267 -1.2173 1.7687 35 1 5.7791 -1.8937 -0.9636 36 1 8.9366 -1.5645 0.1236 37 1 8.8070 0.2099 0.0662 38 1 11.9766 -3.5709 0.4054 39 1 11.3306 0.7479 -2.7073 40 1 10.0700 1.5825 -1.6509 41 1 11.1891 0.6467 0.4248 42 1 12.4500 -0.1884 -0.6307 43 1 4.1204 -2.1327 -0.0127 44 1 1.6581 -2.1325 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331961399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:30 Heat of formation + Delta-G solvation = -55.358585 kcal Electronic energy + Delta-G solvation = -25540.209543 eV Core-core repulsion = 21970.041541 eV Total energy + Delta-G solvation = -3570.168002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57783 -38.56391 -38.01379 -37.30416 -36.79272 -34.05723 -33.22933 -31.82425 -30.65845 -29.82809 -27.63838 -27.35837 -23.97864 -23.51726 -22.98471 -21.51050 -21.43839 -20.22605 -18.71329 -18.37851 -17.79390 -16.86678 -16.58933 -16.48756 -16.22265 -15.93611 -15.62014 -15.38621 -14.95799 -14.81145 -14.43084 -14.25555 -14.17704 -13.78471 -13.62563 -13.41546 -13.18322 -13.01248 -12.94590 -12.90799 -12.83038 -12.68703 -12.59206 -12.46994 -12.41738 -12.20990 -11.91806 -11.82326 -11.71674 -11.54036 -10.85902 -10.60907 -10.50429 -9.88576 -9.80622 -9.40042 -8.18065 -6.30448 -0.51834 0.40528 0.51835 1.37986 1.40883 1.51889 1.99597 2.41896 2.84403 2.95629 3.09892 3.35560 3.45099 3.62375 3.90733 4.01827 4.09767 4.12319 4.20780 4.23972 4.29496 4.44012 4.50286 4.57134 4.60208 4.63275 4.81394 4.86109 4.86391 4.88859 4.97217 4.98482 5.08530 5.21581 5.22814 5.29349 5.33345 5.48508 5.52652 5.59893 5.71115 5.72854 5.74795 6.09534 6.13794 6.24536 6.75540 7.41104 8.89573 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.003377 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.700529 B = 8288.340057 C = 8708.489856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.100 4.100 6 C 0.181 3.819 7 H 0.097 0.903 8 C -0.173 4.173 9 N -1.113 6.113 10 S 2.619 3.381 11 O -0.997 6.997 12 O -0.991 6.991 13 C -0.547 4.547 14 C 0.009 3.991 15 C -0.524 4.524 16 H 0.047 0.953 17 C 0.041 3.959 18 N -0.892 5.892 19 Si 0.933 3.067 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.278 1.278 23 C -0.204 4.204 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.930 7.123 6.497 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.102 4.102 6 C 0.074 3.926 7 H 0.115 0.885 8 C -0.232 4.232 9 N -0.873 5.873 10 S 2.717 3.283 11 O -0.987 6.987 12 O -0.981 6.981 13 C -0.680 4.680 14 C 0.007 3.993 15 C -0.562 4.562 16 H 0.065 0.935 17 C -0.161 4.161 18 N -0.528 5.528 19 Si 0.759 3.241 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.241 4.241 24 C -0.173 4.173 25 C -0.139 4.139 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.804 7.185 5.706 20.923 hybrid contribution 0.843 -1.425 0.055 1.657 sum -17.961 5.760 5.761 19.722 Atomic orbital electron populations 1.20829 0.89371 1.03717 1.02939 1.20316 0.97566 0.93031 0.98815 1.21301 0.93784 0.98632 1.00565 1.21280 0.94976 0.97702 0.99703 1.19907 0.94122 0.94419 1.01750 1.19860 0.91407 0.90551 0.90782 0.88501 1.22461 1.02000 1.03975 0.94774 1.55715 1.43050 1.26445 1.62069 1.04474 0.74842 0.73026 0.75995 1.93464 1.85273 1.46503 1.73465 1.93503 1.86104 1.48539 1.69927 1.29938 1.12380 1.10525 1.15177 1.18436 0.90699 0.90647 0.99506 1.20712 1.40926 1.00314 0.94226 0.93458 1.25468 0.95686 0.99375 0.95622 1.70049 1.39830 1.35062 1.07874 0.85932 0.78984 0.79916 0.79306 1.19492 1.20162 1.20291 1.23311 1.05200 0.97281 0.98287 1.22489 0.97431 1.02773 0.94594 1.21114 0.94873 0.97819 1.00074 1.21278 0.93777 0.98710 1.00890 0.90662 0.90746 0.90430 0.83910 0.84497 0.91626 0.89239 0.91230 0.74583 0.85406 0.84812 0.92679 0.89882 0.88214 0.89197 0.91506 0.85598 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.68 5.88 -19.86 -0.12 -1.80 16 3 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 4 C -0.12 -2.41 9.67 22.27 0.22 -2.20 16 5 C -0.10 -2.31 4.96 -19.86 -0.10 -2.41 16 6 C 0.18 4.50 3.01 44.25 0.13 4.63 16 7 H 0.10 2.41 7.34 -2.39 -0.02 2.40 16 8 C -0.17 -3.67 9.46 71.98 0.68 -2.99 16 9 N -1.11 -33.56 5.31 -172.53 -0.92 -34.48 16 10 S 2.62 105.74 5.33 -56.49 -0.30 105.44 16 11 O -1.00 -43.18 17.39 -127.65 -2.22 -45.40 16 12 O -0.99 -48.89 17.10 -127.65 -2.18 -51.07 16 13 C -0.55 -22.01 4.88 71.98 0.35 -21.66 16 14 C 0.01 0.44 1.34 -52.93 -0.07 0.37 16 15 C -0.52 -29.09 7.66 25.60 0.20 -28.89 16 16 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 17 C 0.04 2.24 5.39 84.66 0.46 2.70 16 18 N -0.89 -48.68 12.93 21.45 0.28 -48.40 16 19 Si 0.93 44.25 29.54 68.60 2.03 46.28 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 23 C -0.20 -8.62 9.96 30.62 0.30 -8.32 16 24 C -0.13 -5.88 9.44 30.62 0.29 -5.59 16 25 C -0.12 -2.63 9.16 22.27 0.20 -2.42 16 26 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.08 0.69 8.09 -2.38 -0.02 0.68 16 30 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.14 2.34 8.04 -2.91 -0.02 2.32 16 32 H 0.06 1.47 5.97 -2.39 -0.01 1.45 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.42 11.42 7.03 -96.75 -0.68 10.74 16 36 H 0.13 5.37 8.14 -2.39 -0.02 5.35 16 37 H 0.13 4.31 7.11 -2.39 -0.02 4.29 16 38 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 39 H 0.08 3.53 8.14 -2.38 -0.02 3.51 16 40 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 41 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.13 2.53 6.80 -2.91 -0.02 2.51 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.58 374.99 0.69 -69.90 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.31 Total: 31.09 kcal Atomic # 6 Polarization: -77.04 SS G_CDS: 3.69 Total: -73.35 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -0.64 Total: -82.88 kcal Atomic # 8 Polarization: -92.07 SS G_CDS: -4.40 Total: -96.47 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 105.74 SS G_CDS: -0.30 Total: 105.44 kcal Total: -70.58 0.69 -69.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331961399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.537 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds