Wall clock time and date at job start Tue Mar 31 2020 14:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38242 * 119.99946 * 2 1 4 4 C 1.38235 * 119.99674 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00314 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00050 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47386 * 20.00517 * 6 5 4 8 8 C 1.53005 * 109.47335 * 260.00316 * 6 5 4 9 9 N 1.46508 * 109.47106 * 140.00343 * 6 5 4 10 10 S 1.65598 * 120.00068 * 215.00260 * 9 6 5 11 11 O 1.42104 * 104.27569 * 308.92569 * 10 9 6 12 12 O 1.42102 * 104.27715 * 181.07232 * 10 9 6 13 13 C 1.81394 * 104.44995 * 64.99872 * 10 9 6 14 14 C 1.53003 * 109.47110 * 181.12621 * 13 10 9 15 15 C 1.50697 * 115.55199 * 294.68768 * 14 13 10 16 16 H 1.07997 * 119.99876 * 95.19048 * 15 14 13 17 17 C 1.37875 * 119.99596 * 274.90937 * 15 14 13 18 18 N 1.31518 * 120.00369 * 6.46189 * 17 15 14 19 19 Si 1.86800 * 119.99771 * 186.45471 * 17 15 14 20 20 H 1.48497 * 109.47349 * 90.00143 * 19 17 15 21 21 H 1.48504 * 109.47304 * 210.00587 * 19 17 15 22 22 H 1.48507 * 109.47196 * 330.00300 * 19 17 15 23 23 C 1.53001 * 117.49552 * 80.35789 * 14 13 10 24 24 C 1.53000 * 117.49468 * 149.01362 * 14 13 10 25 25 C 1.38243 * 120.00135 * 0.28333 * 5 4 3 26 26 C 1.38233 * 119.99630 * 359.50591 * 25 5 4 27 27 H 1.09002 * 109.46906 * 89.99869 * 1 2 3 28 28 H 1.08999 * 109.46910 * 209.99605 * 1 2 3 29 29 H 1.09002 * 109.47166 * 329.99919 * 1 2 3 30 30 H 1.07992 * 119.99742 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.99824 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.46871 * 60.00422 * 8 6 5 33 33 H 1.09001 * 109.46818 * 179.97438 * 8 6 5 34 34 H 1.08995 * 109.46739 * 300.00088 * 8 6 5 35 35 H 0.97001 * 119.99685 * 35.00197 * 9 6 5 36 36 H 1.08999 * 109.47281 * 61.12780 * 13 10 9 37 37 H 1.09000 * 109.47351 * 301.12981 * 13 10 9 38 38 H 0.97001 * 119.99982 * 185.08576 * 18 17 15 39 39 H 1.09004 * 117.50150 * 215.00342 * 23 14 13 40 40 H 1.09010 * 117.50069 * 0.02562 * 23 14 13 41 41 H 1.08999 * 117.50450 * 359.97438 * 24 14 13 42 42 H 1.09005 * 117.49716 * 144.98051 * 24 14 13 43 43 H 1.07994 * 119.99799 * 179.72625 * 25 5 4 44 44 H 1.08002 * 119.99866 * 180.27847 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1418 0.9659 0.3542 8 6 6.2898 -0.2510 -1.4173 9 7 6.2663 -1.0577 0.8914 10 16 7.6492 -0.8267 1.7727 11 8 8.6064 -0.3942 0.8156 12 8 7.8211 -2.0464 2.4812 13 6 7.2379 0.5207 2.9154 14 6 8.4592 0.8502 3.7760 15 6 8.9052 -0.2399 4.7161 16 1 9.6867 -0.9233 4.4184 17 6 8.3195 -0.3612 5.9583 18 7 7.2876 0.3901 6.2750 19 14 8.9917 -1.5928 7.1915 20 1 10.0362 -0.9417 8.0223 21 1 7.8899 -2.0697 8.0656 22 1 9.5832 -2.7463 6.4670 23 6 9.5424 1.7352 3.1559 24 6 8.6240 2.2976 4.2438 25 6 3.5805 -1.1972 -0.0038 26 6 2.1982 -1.1972 0.0001 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1324 0.0010 32 1 5.9271 0.5360 -2.0784 33 1 7.3799 -0.2505 -1.4165 34 1 5.9268 -1.2168 -1.7687 35 1 5.7791 -1.8934 0.9636 36 1 6.4130 0.2131 3.5580 37 1 6.9456 1.4032 2.3464 38 1 6.9217 0.3581 7.1728 39 1 10.5776 1.5290 3.4278 40 1 9.3846 2.0831 2.1349 41 1 7.8626 3.0152 3.9380 42 1 9.0547 2.4614 5.2316 43 1 4.1206 -2.1324 -0.0074 44 1 1.6582 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331961401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:33 Heat of formation + Delta-G solvation = -55.741481 kcal Electronic energy + Delta-G solvation = -25672.345160 eV Core-core repulsion = 22102.160554 eV Total energy + Delta-G solvation = -3570.184606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57115 -38.56868 -38.01153 -37.27986 -36.76368 -34.08056 -33.21378 -31.80929 -30.59905 -29.86928 -27.54696 -27.49240 -23.98917 -23.50555 -22.98497 -21.53604 -21.45366 -20.19734 -18.71033 -18.33956 -17.82472 -16.83071 -16.63221 -16.48246 -16.21655 -15.92718 -15.59362 -15.41084 -14.95098 -14.78363 -14.37835 -14.23927 -14.18611 -13.75578 -13.66441 -13.54747 -13.17474 -13.01496 -12.93052 -12.90664 -12.82963 -12.64434 -12.56988 -12.48331 -12.42853 -12.22878 -11.94344 -11.83501 -11.68504 -11.55034 -10.87410 -10.61470 -10.52104 -9.88710 -9.79576 -9.39275 -8.20136 -6.34068 -0.51600 0.40952 0.53098 1.37102 1.39975 1.50597 2.00415 2.40148 2.84611 2.95766 3.07880 3.35247 3.45719 3.62118 3.88688 3.99864 4.07865 4.11308 4.19628 4.23287 4.36228 4.41877 4.51054 4.57073 4.61103 4.62621 4.83791 4.86177 4.86545 4.90839 4.97927 4.99001 5.09255 5.21706 5.23598 5.29592 5.35790 5.46839 5.53578 5.59530 5.71225 5.71846 5.73797 6.09127 6.14627 6.22236 6.72833 7.38578 8.87646 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003945 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.773805 B = 7096.618752 C = 7663.731448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.102 4.102 6 C 0.186 3.814 7 H 0.096 0.904 8 C -0.164 4.164 9 N -1.113 6.113 10 S 2.624 3.376 11 O -0.986 6.986 12 O -0.994 6.994 13 C -0.552 4.552 14 C 0.009 3.991 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.041 3.959 18 N -0.893 5.893 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.196 4.196 24 C -0.137 4.137 25 C -0.118 4.118 26 C -0.129 4.129 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.418 0.582 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.127 0.873 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 2.515 -14.811 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.104 4.104 6 C 0.079 3.921 7 H 0.114 0.886 8 C -0.222 4.222 9 N -0.873 5.873 10 S 2.721 3.279 11 O -0.976 6.976 12 O -0.985 6.985 13 C -0.684 4.684 14 C 0.006 3.994 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.162 4.162 18 N -0.529 5.529 19 Si 0.759 3.241 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.234 4.234 24 C -0.176 4.176 25 C -0.137 4.137 26 C -0.147 4.147 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.145 0.855 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.822 2.149 -14.829 19.721 hybrid contribution -0.153 -0.637 1.383 1.530 sum -12.975 1.513 -13.446 18.746 Atomic orbital electron populations 1.20831 0.89536 1.03466 1.03093 1.20308 0.97501 0.93116 0.98806 1.21301 0.93954 0.98546 1.00595 1.21272 0.94875 0.97750 0.99624 1.19942 0.94172 0.94372 1.01916 1.19807 0.90815 0.90195 0.91266 0.88621 1.22299 1.01835 1.03432 0.94684 1.55764 1.47044 1.26011 1.58441 1.04380 0.73492 0.75908 0.74138 1.93473 1.59912 1.84246 1.59979 1.93494 1.85051 1.44610 1.75309 1.29873 1.08122 1.17492 1.12938 1.18416 0.91396 0.92275 0.97281 1.20735 1.20563 1.14319 1.01044 0.93345 1.25507 0.94031 0.96991 0.99659 1.70059 1.21907 1.40865 1.20118 0.85917 0.78677 0.80089 0.79403 1.19250 1.20222 1.20072 1.23278 0.96316 1.06008 0.97754 1.22496 1.01421 0.96669 0.97016 1.21098 0.94761 0.97865 0.99949 1.21270 0.93879 0.98626 1.00913 0.90115 0.91060 0.90812 0.84095 0.84290 0.89539 0.92084 0.91507 0.74567 0.86238 0.85077 0.92650 0.89841 0.88060 0.89355 0.91553 0.85545 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.10 -1.75 5.88 -19.86 -0.12 -1.86 16 3 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.34 9.67 22.27 0.22 -2.12 16 5 C -0.10 -2.29 4.95 -19.87 -0.10 -2.39 16 6 C 0.19 4.54 2.88 44.25 0.13 4.67 16 7 H 0.10 2.18 6.99 -2.39 -0.02 2.16 16 8 C -0.16 -3.63 9.49 71.98 0.68 -2.94 16 9 N -1.11 -32.97 5.32 -172.50 -0.92 -33.89 16 10 S 2.62 105.27 5.18 -56.49 -0.29 104.97 16 11 O -0.99 -41.50 17.11 -127.65 -2.18 -43.69 16 12 O -0.99 -48.84 17.48 -127.65 -2.23 -51.07 16 13 C -0.55 -22.81 5.83 71.98 0.42 -22.39 16 14 C 0.01 0.41 1.33 -52.93 -0.07 0.34 16 15 C -0.53 -29.60 7.97 25.60 0.20 -29.40 16 16 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 17 C 0.04 2.25 5.39 84.65 0.46 2.71 16 18 N -0.89 -49.73 12.93 21.45 0.28 -49.45 16 19 Si 0.93 44.49 29.54 68.60 2.03 46.52 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 C -0.20 -8.33 9.96 30.62 0.30 -8.02 16 24 C -0.14 -6.10 9.43 30.62 0.29 -5.81 16 25 C -0.12 -2.54 9.15 22.27 0.20 -2.34 16 26 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.14 2.26 8.04 -2.91 -0.02 2.24 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.42 11.15 7.06 -96.74 -0.68 10.47 16 36 H 0.12 5.32 8.14 -2.39 -0.02 5.30 16 37 H 0.13 4.33 7.36 -2.39 -0.02 4.31 16 38 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 39 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 41 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.13 2.47 6.83 -2.91 -0.02 2.45 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -70.56 377.49 0.75 -69.81 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.31 Total: 31.36 kcal Atomic # 6 Polarization: -78.33 SS G_CDS: 3.76 Total: -74.56 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.64 Total: -83.34 kcal Atomic # 8 Polarization: -90.34 SS G_CDS: -4.42 Total: -94.76 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 105.27 SS G_CDS: -0.29 Total: 104.97 kcal Total: -70.56 0.75 -69.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331961401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.066 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds