Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 120.00102 * 2 1 4 4 C 1.38235 * 119.99803 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99799 * 180.02562 * 4 3 2 6 6 C 1.38239 * 120.00355 * 359.97438 * 4 3 2 7 7 S 1.76196 * 120.00143 * 180.02562 * 6 4 3 8 8 O 1.42098 * 106.39986 * 327.55555 * 7 6 4 9 9 O 1.42101 * 106.40143 * 194.63149 * 7 6 4 10 10 N 1.65603 * 107.21644 * 81.09144 * 7 6 4 11 11 C 1.46498 * 120.00126 * 65.00048 * 10 7 6 12 12 C 1.52997 * 109.47552 * 160.90250 * 11 10 7 13 13 C 1.50706 * 115.54668 * 295.19561 * 12 11 10 14 14 H 1.08000 * 119.99632 * 95.51479 * 13 12 11 15 15 C 1.37878 * 120.00173 * 275.24035 * 13 12 11 16 16 N 1.31512 * 119.99746 * 355.67826 * 15 13 12 17 17 Si 1.86798 * 120.00064 * 175.67947 * 15 13 12 18 18 H 1.48505 * 109.46981 * 60.00195 * 17 15 13 19 19 H 1.48500 * 109.46911 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47180 * 299.99936 * 17 15 13 21 21 C 1.52993 * 117.50197 * 80.86263 * 12 11 10 22 22 C 1.53000 * 117.50318 * 149.52607 * 12 11 10 23 23 C 1.38230 * 119.99677 * 0.27596 * 6 4 3 24 24 C 1.50701 * 119.99850 * 179.72848 * 23 6 4 25 25 C 1.38236 * 120.00247 * 359.51372 * 23 6 4 26 26 H 1.08995 * 109.47134 * 90.00161 * 1 2 3 27 27 H 1.09000 * 109.46730 * 209.99984 * 1 2 3 28 28 H 1.08998 * 109.46852 * 330.00176 * 1 2 3 29 29 H 1.07992 * 119.99693 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.46820 * 269.97656 * 5 4 3 31 31 H 1.08997 * 109.47055 * 29.97878 * 5 4 3 32 32 H 1.08999 * 109.47367 * 149.97453 * 5 4 3 33 33 H 0.97003 * 120.00095 * 244.99789 * 10 7 6 34 34 H 1.08999 * 109.47015 * 40.90106 * 11 10 7 35 35 H 1.09001 * 109.47513 * 280.90453 * 11 10 7 36 36 H 0.96998 * 119.99941 * 185.00983 * 16 15 13 37 37 H 1.09001 * 117.50048 * 215.00940 * 21 12 11 38 38 H 1.09007 * 117.49635 * 0.02562 * 21 12 11 39 39 H 1.08996 * 117.49405 * 359.97261 * 22 12 11 40 40 H 1.08999 * 117.49444 * 144.97374 * 22 12 11 41 41 H 1.08992 * 109.47404 * 72.77564 * 24 23 6 42 42 H 1.09000 * 109.46992 * 192.77577 * 24 23 6 43 43 H 1.09002 * 109.47056 * 312.77302 * 24 23 6 44 44 H 1.08003 * 120.00208 * 180.26785 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3341 2.5022 0.0011 6 6 4.2718 -0.0001 0.0016 7 16 6.0337 -0.0001 0.0030 8 8 6.4355 1.1500 -0.7285 9 8 6.4352 -1.3192 -0.3405 10 7 6.5227 0.2456 1.5660 11 6 6.2265 -0.7570 2.5923 12 6 7.1558 -0.5507 3.7901 13 6 8.6215 -0.7772 3.5221 14 1 9.2620 0.0587 3.2823 15 6 9.1458 -2.0506 3.5887 16 7 8.3868 -3.0552 3.9687 17 14 10.9342 -2.3490 3.1392 18 1 11.8096 -1.5533 4.0369 19 1 11.2491 -3.7921 3.2933 20 1 11.1657 -1.9390 1.7309 21 6 6.7818 0.5408 4.7947 22 6 6.6229 -0.9341 5.1721 23 6 3.5806 -1.1971 -0.0036 24 6 4.3341 -2.5023 -0.0086 25 6 2.1982 -1.1972 0.0002 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6582 2.1324 -0.0004 30 1 4.5165 2.8168 -1.0264 31 1 3.7447 3.2618 0.5145 32 1 5.2861 2.3719 0.5157 33 1 7.0052 1.0533 1.8020 34 1 6.3802 -1.7546 2.1808 35 1 5.1904 -0.6525 2.9142 36 1 8.7727 -3.9374 4.0856 37 1 7.5958 1.0953 5.2618 38 1 5.8734 1.1118 4.6025 39 1 5.6101 -1.3328 5.2280 40 1 7.3323 -1.3504 5.8873 41 1 4.7788 -2.6688 0.9724 42 1 3.6479 -3.3171 -0.2396 43 1 5.1205 -2.4649 -0.7625 44 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332152968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = -47.604672 kcal Electronic energy + Delta-G solvation = -26364.728287 eV Core-core repulsion = 22794.896520 eV Total energy + Delta-G solvation = -3569.831767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70176 -38.82762 -38.46315 -36.93855 -34.95884 -34.60652 -34.43620 -33.88240 -28.92522 -28.09025 -27.88007 -27.65401 -26.60212 -22.86874 -22.33989 -21.94829 -21.17754 -20.40979 -18.81844 -18.40427 -17.88955 -17.37528 -16.66191 -16.42762 -15.91390 -15.62986 -15.36446 -15.27279 -15.02711 -14.74419 -14.32461 -14.20036 -14.04890 -13.98324 -13.74935 -13.63894 -13.50041 -13.11500 -13.06893 -13.00025 -12.95568 -12.82867 -12.77789 -12.39533 -12.30332 -12.10848 -11.97456 -11.94140 -11.32177 -11.28563 -10.96601 -10.37459 -10.26164 -10.01700 -9.89161 -9.60177 -8.06775 -6.17354 -0.54072 -0.17086 0.31190 1.40393 1.44732 1.48856 2.08829 2.43990 2.45923 2.84675 3.21966 3.38234 3.55189 3.68915 3.72571 3.80292 4.24857 4.27987 4.28362 4.44271 4.48515 4.55256 4.57140 4.61643 4.68725 4.72196 4.74783 4.76045 4.79927 4.85778 4.96345 5.06302 5.09933 5.25191 5.26376 5.33458 5.34135 5.36726 5.48658 5.51549 5.67569 5.76998 5.83237 5.94769 6.24491 6.44173 6.87809 7.50456 9.00020 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.004408 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.557892 B = 6350.306740 C = 6517.137245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.022 4.022 3 C -0.159 4.159 4 C 0.018 3.982 5 C -0.141 4.141 6 C -0.701 4.701 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.987 6.987 10 N -1.095 6.095 11 C 0.177 3.823 12 C 0.005 3.995 13 C -0.503 4.503 14 H 0.053 0.947 15 C 0.029 3.971 16 N -0.902 5.902 17 Si 0.934 3.066 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.280 1.280 21 C -0.182 4.182 22 C -0.151 4.151 23 C 0.016 3.984 24 C -0.163 4.163 25 C -0.162 4.162 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.419 0.581 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.259 0.741 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 7.640 -6.624 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.022 4.022 3 C -0.178 4.178 4 C 0.017 3.983 5 C -0.198 4.198 6 C -0.791 4.791 7 S 2.789 3.211 8 O -0.976 6.976 9 O -0.977 6.977 10 N -0.855 5.855 11 C 0.051 3.949 12 C 0.003 3.997 13 C -0.541 4.541 14 H 0.071 0.929 15 C -0.172 4.172 16 N -0.539 5.539 17 Si 0.760 3.240 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.205 1.205 21 C -0.219 4.219 22 C -0.190 4.190 23 C 0.014 3.986 24 C -0.220 4.220 25 C -0.181 4.181 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.177 0.823 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.963 7.142 -7.420 19.845 hybrid contribution 1.057 -0.344 0.356 1.167 sum -15.906 6.798 -7.064 18.685 Atomic orbital electron populations 1.20997 0.87870 1.04599 1.04018 1.20639 0.98220 0.92463 0.90904 1.21345 0.92576 0.99470 1.04390 1.19818 0.95217 0.93192 0.90096 1.21312 0.99978 0.93852 1.04646 1.30252 1.25227 0.99738 1.23905 1.01431 0.74613 0.72572 0.72499 1.93523 1.82867 1.50778 1.70469 1.93492 1.82180 1.39335 1.82675 1.55018 1.71963 1.31907 1.26597 1.20615 0.96073 0.89586 0.88670 1.19039 0.93712 0.99708 0.87271 1.20623 0.93061 0.92539 1.47884 0.92883 1.25550 1.00511 0.96232 0.94922 1.70041 1.36209 1.00858 1.46825 0.85991 0.82062 0.77114 0.78788 1.19395 1.21015 1.20529 1.23019 1.01853 0.91199 1.05804 1.22403 0.99423 0.96610 1.00530 1.19807 0.95218 0.93222 0.90315 1.21702 1.01514 0.93924 1.04882 1.21354 0.92500 0.99602 1.04651 0.89063 0.90034 0.89536 0.82319 0.88999 0.87741 0.91851 0.74542 0.93125 0.92933 0.93179 0.90388 0.88646 0.90510 0.92061 0.91281 0.88985 0.87790 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.02 -0.43 5.88 -19.86 -0.12 -0.54 16 3 C -0.16 -3.30 9.36 22.27 0.21 -3.09 16 4 C 0.02 0.48 5.87 -19.86 -0.12 0.37 16 5 C -0.14 -3.34 8.48 71.24 0.60 -2.74 16 6 C -0.70 -22.04 5.93 22.27 0.13 -21.91 16 7 S 2.69 100.03 4.96 -56.49 -0.28 99.75 16 8 O -0.99 -37.79 14.99 -128.00 -1.92 -39.71 16 9 O -0.99 -42.68 13.04 -128.00 -1.67 -44.35 16 10 N -1.09 -41.39 5.73 -187.50 -1.07 -42.47 16 11 C 0.18 7.46 6.08 86.38 0.53 7.99 16 12 C 0.00 0.21 1.48 -52.93 -0.08 0.14 16 13 C -0.50 -26.70 8.73 25.60 0.22 -26.48 16 14 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 15 C 0.03 1.57 5.43 84.66 0.46 2.03 16 16 N -0.90 -50.97 12.67 21.45 0.27 -50.70 16 17 Si 0.93 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 21 C -0.18 -7.10 9.96 30.62 0.30 -6.80 16 22 C -0.15 -6.69 9.17 30.62 0.28 -6.41 16 23 C 0.02 0.47 5.88 -19.87 -0.12 0.36 16 24 C -0.16 -5.13 8.47 71.24 0.60 -4.53 16 25 C -0.16 -3.76 9.32 22.27 0.21 -3.56 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 28 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.10 1.74 8.08 -2.39 -0.02 1.73 16 32 H 0.06 1.68 5.80 -2.39 -0.01 1.67 16 33 H 0.42 14.79 8.68 -96.74 -0.84 13.95 16 34 H 0.05 2.45 6.94 -2.39 -0.02 2.43 16 35 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 36 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.07 2.41 7.38 -2.39 -0.02 2.39 16 42 H 0.09 2.26 7.93 -2.39 -0.02 2.24 16 43 H 0.10 3.70 5.41 -3.51 -0.02 3.68 16 44 H 0.15 2.68 7.99 -2.91 -0.02 2.66 16 Total: -1.00 -67.43 367.78 1.35 -66.08 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.16 Total: 30.95 kcal Atomic # 6 Polarization: -69.61 SS G_CDS: 3.83 Total: -65.77 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -0.80 Total: -93.16 kcal Atomic # 8 Polarization: -80.47 SS G_CDS: -3.59 Total: -84.06 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 100.03 SS G_CDS: -0.28 Total: 99.75 kcal Total: -67.43 1.35 -66.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332152968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.478 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds