Wall clock time and date at job start Tue Mar 31 2020 13:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.40065 * 2 1 4 4 C 1.50805 * 109.43648 * 119.89378 * 2 1 3 5 5 C 1.38834 * 117.81637 * 288.68658 * 4 2 1 6 6 C 1.37955 * 120.50550 * 178.86252 * 5 4 2 7 7 C 1.38268 * 119.71892 * 359.97432 * 6 5 4 8 8 C 1.37909 * 119.82516 * 0.26240 * 7 6 5 9 9 C 1.37666 * 122.33347 * 108.01876 * 4 2 1 10 10 C 1.50605 * 122.84551 * 2.15091 * 9 4 2 11 11 C 1.52782 * 110.85361 * 339.37399 * 10 9 4 12 12 N 1.46662 * 109.38376 * 240.08566 * 2 1 3 13 13 S 1.65602 * 121.29664 * 104.41193 * 12 2 1 14 14 O 1.42102 * 104.27793 * 41.68843 * 13 12 2 15 15 O 1.42100 * 104.27892 * 169.54979 * 13 12 2 16 16 C 1.81401 * 104.44853 * 285.61749 * 13 12 2 17 17 C 1.52998 * 109.47539 * 179.97438 * 16 13 12 18 18 C 1.50698 * 109.47381 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99961 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99859 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46769 * 90.00218 * 22 20 18 24 24 H 1.48498 * 109.46830 * 209.99884 * 22 20 18 25 25 H 1.48501 * 109.47129 * 330.00249 * 22 20 18 26 26 H 1.08995 * 109.47511 * 300.10289 * 1 2 3 27 27 H 1.09003 * 109.47130 * 60.10993 * 1 2 3 28 28 H 1.09004 * 109.46836 * 180.10110 * 1 2 3 29 29 H 1.09003 * 109.46753 * 174.24335 * 3 2 1 30 30 H 1.08999 * 109.47115 * 294.24669 * 3 2 1 31 31 H 1.09001 * 109.46550 * 54.24709 * 3 2 1 32 32 H 1.08005 * 119.74074 * 358.84979 * 5 4 2 33 33 H 1.07994 * 120.14435 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.08603 * 180.24001 * 7 6 5 35 35 H 1.08006 * 119.70903 * 179.72692 * 8 7 6 36 36 H 1.08992 * 109.20180 * 99.73165 * 10 9 4 37 37 H 1.09001 * 109.19372 * 219.06972 * 10 9 4 38 38 H 1.09003 * 109.76583 * 167.13146 * 11 10 9 39 39 H 1.09000 * 109.77143 * 287.90879 * 11 10 9 40 40 H 1.09000 * 109.47555 * 300.00063 * 16 13 12 41 41 H 1.09004 * 109.46990 * 59.99804 * 16 13 12 42 42 H 1.09000 * 109.46942 * 300.00675 * 17 16 13 43 43 H 1.09004 * 109.46946 * 60.00014 * 17 16 13 44 44 H 0.97001 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0382 1.4432 0.0000 4 6 2.0318 -0.7088 1.2329 5 6 1.8763 -0.0701 2.4558 6 6 2.2942 -0.6781 3.6215 7 6 2.8716 -1.9334 3.5710 8 6 3.0309 -2.5667 2.3563 9 6 2.6161 -1.9541 1.1798 10 6 2.8471 -2.6936 -0.1118 11 6 1.9348 -2.1597 -1.2149 12 7 2.0167 -0.6900 -1.1992 13 16 2.6344 0.1516 -2.4847 14 8 3.4357 1.1628 -1.8892 15 8 3.2123 -0.8481 -3.3129 16 6 1.1812 0.8818 -3.2881 17 6 1.6260 1.6950 -4.5054 18 6 0.4187 2.3021 -5.1724 19 1 -0.5673 2.1253 -4.7687 20 6 0.5729 3.0825 -6.2986 21 7 1.7734 3.2966 -6.7910 22 14 -0.9237 3.8345 -7.1258 23 1 -1.1937 5.1717 -6.5392 24 1 -0.6660 3.9754 -8.5815 25 1 -2.1008 2.9542 -6.9143 26 1 -0.3634 0.5154 0.8890 27 1 -0.3633 0.5121 -0.8910 28 1 -0.3633 -1.0277 0.0018 29 1 3.1233 1.4462 0.1031 30 1 1.7608 1.9261 -0.9370 31 1 1.5925 1.9853 0.8340 32 1 1.4250 0.9104 2.4946 33 1 2.1708 -0.1758 4.5695 34 1 3.1973 -2.4166 4.4803 35 1 3.4862 -3.5454 2.3185 36 1 3.8867 -2.5694 -0.4149 37 1 2.6423 -3.7533 0.0404 38 1 2.2662 -2.5372 -2.1823 39 1 0.9078 -2.4737 -1.0281 40 1 0.5057 0.0884 -3.6079 41 1 0.6664 1.5351 -2.5835 42 1 2.3013 2.4884 -4.1852 43 1 2.1409 1.0420 -5.2101 44 1 1.8818 3.8453 -7.5835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334233641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:59 Heat of formation + Delta-G solvation = -46.815996 kcal Electronic energy + Delta-G solvation = -26387.678309 eV Core-core repulsion = 22817.880742 eV Total energy + Delta-G solvation = -3569.797568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47572 -37.29185 -36.74812 -35.41866 -34.29683 -33.86016 -31.42653 -31.19740 -30.09117 -27.94391 -27.23061 -25.63819 -23.79706 -23.42532 -21.60254 -21.21265 -20.03206 -18.18596 -17.22641 -17.07656 -16.40088 -15.90413 -15.68787 -15.11198 -14.96840 -14.71079 -14.55201 -14.15701 -14.02561 -13.47974 -13.39360 -13.33220 -12.93767 -12.62685 -12.38315 -12.34083 -12.17311 -11.88200 -11.77740 -11.72601 -11.59474 -11.45421 -11.38715 -11.08300 -10.97379 -10.85038 -10.76276 -10.39581 -10.36702 -10.20518 -9.76689 -9.33471 -8.92173 -8.76729 -8.67796 -8.51230 -6.13290 -4.18929 0.74463 1.25488 1.26636 2.97522 3.25340 3.31687 3.34344 3.62638 4.26519 4.35834 4.38178 4.52320 4.70051 4.75253 4.82539 4.86955 5.00681 5.10451 5.15226 5.21778 5.24257 5.34717 5.43692 5.51943 5.53246 5.60962 5.71875 5.71987 5.73749 5.85306 5.88385 5.95174 5.99843 6.10894 6.15957 6.34787 6.40190 6.47653 6.53389 6.60510 6.77482 6.89494 7.28885 7.34648 7.79658 8.16503 8.84449 9.45886 10.97731 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003498 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.680580 B = 8001.527293 C = 8420.763568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.220 3.780 3 C -0.171 4.171 4 C -0.069 4.069 5 C -0.110 4.110 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.065 4.065 10 C -0.097 4.097 11 C 0.118 3.882 12 N -0.999 5.999 13 S 2.590 3.410 14 O -0.958 6.958 15 O -0.966 6.966 16 C -0.591 4.591 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -11.074 19.761 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 C -0.229 4.229 4 C -0.071 4.071 5 C -0.129 4.129 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.065 4.065 10 C -0.135 4.135 11 C -0.007 4.007 12 N -0.834 5.834 13 S 2.690 3.310 14 O -0.949 6.949 15 O -0.957 6.957 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.321 -10.959 19.376 22.262 hybrid contribution -1.436 0.483 -0.396 1.566 sum -1.757 -10.476 18.980 21.750 Atomic orbital electron populations 1.22308 0.93701 1.02828 1.03028 1.19068 0.93604 0.91787 0.82367 1.22704 1.04670 0.92330 1.03208 1.19668 0.98864 0.94181 0.94351 1.21124 1.00159 0.99909 0.91693 1.21038 0.99630 0.95614 0.98052 1.21034 0.99865 0.95557 0.97585 1.21159 1.00750 1.00115 0.92108 1.19517 0.97942 0.94073 0.94957 1.20824 1.01279 0.99091 0.92329 1.21387 0.99898 0.79149 1.00251 1.58139 1.80467 1.14798 1.30034 1.05727 0.77849 0.74263 0.73132 1.93605 1.66825 1.59815 1.74613 1.93504 1.75876 1.58460 1.67831 1.30568 1.17962 1.11738 1.12114 1.18955 0.98494 0.94508 0.89022 1.20995 0.92583 1.31124 1.11230 0.92037 1.25069 0.96208 0.96236 0.96957 1.69955 1.21513 1.38427 1.22933 0.86474 0.82603 0.79574 0.78673 1.20446 1.21002 1.19747 0.91302 0.91190 0.91892 0.88689 0.91107 0.91230 0.85753 0.86136 0.86313 0.86251 0.90028 0.89792 0.87810 0.90956 0.86170 0.86216 0.94868 0.94938 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.52 37.15 0.32 -1.40 16 2 C 0.22 2.80 0.91 -132.83 -0.12 2.68 16 3 C -0.17 -2.37 6.40 37.16 0.24 -2.13 16 4 C -0.07 -0.84 4.78 -104.56 -0.50 -1.34 16 5 C -0.11 -1.17 8.73 -39.46 -0.34 -1.51 16 6 C -0.13 -1.19 10.05 -39.67 -0.40 -1.58 16 7 C -0.12 -1.14 10.04 -39.69 -0.40 -1.54 16 8 C -0.12 -1.24 9.59 -39.43 -0.38 -1.62 16 9 C -0.06 -0.75 5.76 -104.60 -0.60 -1.36 16 10 C -0.10 -1.05 5.87 -28.04 -0.16 -1.21 16 11 C 0.12 1.41 6.30 -3.76 -0.02 1.39 16 12 N -1.00 -14.22 2.81 -101.13 -0.28 -14.51 16 13 S 2.59 47.46 4.88 -107.50 -0.52 46.94 16 14 O -0.96 -19.54 13.65 -57.54 -0.79 -20.32 16 15 O -0.97 -20.07 16.37 -57.54 -0.94 -21.02 16 16 C -0.59 -11.33 5.85 37.16 0.22 -11.11 16 17 C 0.03 0.74 4.98 -27.89 -0.14 0.61 16 18 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.07 0.63 7.92 -51.93 -0.41 0.21 16 27 H 0.07 0.76 7.45 -51.93 -0.39 0.38 16 28 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 29 H 0.09 1.50 6.76 -51.93 -0.35 1.15 16 30 H 0.07 1.06 5.02 -51.93 -0.26 0.80 16 31 H 0.07 0.76 6.87 -51.93 -0.36 0.40 16 32 H 0.12 1.12 6.77 -52.48 -0.36 0.76 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.96 8.05 -52.48 -0.42 0.54 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.10 1.28 6.73 -51.93 -0.35 0.93 16 39 H 0.07 0.71 7.35 -51.93 -0.38 0.33 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 41 H 0.12 2.05 6.34 -51.92 -0.33 1.72 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -33.80 353.70 -10.69 -44.48 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.49 Total: 1.87 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.71 Total: -33.19 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.45 Total: -40.18 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.73 Total: -41.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 47.46 SS G_CDS: -0.52 Total: 46.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.80 -10.69 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334233641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.333 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds