Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.40065 * 2 1 4 4 C 1.50805 * 109.43648 * 119.89378 * 2 1 3 5 5 C 1.38834 * 117.81637 * 288.68658 * 4 2 1 6 6 C 1.37955 * 120.50550 * 178.86252 * 5 4 2 7 7 C 1.38268 * 119.71892 * 359.97432 * 6 5 4 8 8 C 1.37909 * 119.82516 * 0.26240 * 7 6 5 9 9 C 1.37666 * 122.33347 * 108.01876 * 4 2 1 10 10 C 1.50605 * 122.84551 * 2.15091 * 9 4 2 11 11 C 1.52782 * 110.85361 * 339.37399 * 10 9 4 12 12 N 1.46662 * 109.38376 * 240.08566 * 2 1 3 13 13 S 1.65602 * 121.29664 * 104.41193 * 12 2 1 14 14 O 1.42102 * 104.27793 * 41.68843 * 13 12 2 15 15 O 1.42100 * 104.27892 * 169.54979 * 13 12 2 16 16 C 1.81401 * 104.44853 * 285.61749 * 13 12 2 17 17 C 1.52998 * 109.47539 * 179.97438 * 16 13 12 18 18 C 1.50698 * 109.47381 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99961 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99859 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46769 * 90.00218 * 22 20 18 24 24 H 1.48498 * 109.46830 * 209.99884 * 22 20 18 25 25 H 1.48501 * 109.47129 * 330.00249 * 22 20 18 26 26 H 1.08995 * 109.47511 * 300.10289 * 1 2 3 27 27 H 1.09003 * 109.47130 * 60.10993 * 1 2 3 28 28 H 1.09004 * 109.46836 * 180.10110 * 1 2 3 29 29 H 1.09003 * 109.46753 * 174.24335 * 3 2 1 30 30 H 1.08999 * 109.47115 * 294.24669 * 3 2 1 31 31 H 1.09001 * 109.46550 * 54.24709 * 3 2 1 32 32 H 1.08005 * 119.74074 * 358.84979 * 5 4 2 33 33 H 1.07994 * 120.14435 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.08603 * 180.24001 * 7 6 5 35 35 H 1.08006 * 119.70903 * 179.72692 * 8 7 6 36 36 H 1.08992 * 109.20180 * 99.73165 * 10 9 4 37 37 H 1.09001 * 109.19372 * 219.06972 * 10 9 4 38 38 H 1.09003 * 109.76583 * 167.13146 * 11 10 9 39 39 H 1.09000 * 109.77143 * 287.90879 * 11 10 9 40 40 H 1.09000 * 109.47555 * 300.00063 * 16 13 12 41 41 H 1.09004 * 109.46990 * 59.99804 * 16 13 12 42 42 H 1.09000 * 109.46942 * 300.00675 * 17 16 13 43 43 H 1.09004 * 109.46946 * 60.00014 * 17 16 13 44 44 H 0.97001 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0382 1.4432 0.0000 4 6 2.0318 -0.7088 1.2329 5 6 1.8763 -0.0701 2.4558 6 6 2.2942 -0.6781 3.6215 7 6 2.8716 -1.9334 3.5710 8 6 3.0309 -2.5667 2.3563 9 6 2.6161 -1.9541 1.1798 10 6 2.8471 -2.6936 -0.1118 11 6 1.9348 -2.1597 -1.2149 12 7 2.0167 -0.6900 -1.1992 13 16 2.6344 0.1516 -2.4847 14 8 3.4357 1.1628 -1.8892 15 8 3.2123 -0.8481 -3.3129 16 6 1.1812 0.8818 -3.2881 17 6 1.6260 1.6950 -4.5054 18 6 0.4187 2.3021 -5.1724 19 1 -0.5673 2.1253 -4.7687 20 6 0.5729 3.0825 -6.2986 21 7 1.7734 3.2966 -6.7910 22 14 -0.9237 3.8345 -7.1258 23 1 -1.1937 5.1717 -6.5392 24 1 -0.6660 3.9754 -8.5815 25 1 -2.1008 2.9542 -6.9143 26 1 -0.3634 0.5154 0.8890 27 1 -0.3633 0.5121 -0.8910 28 1 -0.3633 -1.0277 0.0018 29 1 3.1233 1.4462 0.1031 30 1 1.7608 1.9261 -0.9370 31 1 1.5925 1.9853 0.8340 32 1 1.4250 0.9104 2.4946 33 1 2.1708 -0.1758 4.5695 34 1 3.1973 -2.4166 4.4803 35 1 3.4862 -3.5454 2.3185 36 1 3.8867 -2.5694 -0.4149 37 1 2.6423 -3.7533 0.0404 38 1 2.2662 -2.5372 -2.1823 39 1 0.9078 -2.4737 -1.0281 40 1 0.5057 0.0884 -3.6079 41 1 0.6664 1.5351 -2.5835 42 1 2.3013 2.4884 -4.1852 43 1 2.1409 1.0420 -5.2101 44 1 1.8818 3.8453 -7.5835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334233641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = -67.835790 kcal Electronic energy + Delta-G solvation = -26388.589796 eV Core-core repulsion = 22817.880742 eV Total energy + Delta-G solvation = -3570.709054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33111 -38.50049 -37.97089 -36.99088 -35.94156 -35.14695 -33.15185 -32.33358 -30.89206 -28.83130 -28.21895 -27.61711 -24.76126 -24.30044 -23.39714 -22.07356 -21.12677 -19.59645 -18.73287 -18.22927 -17.85683 -17.14335 -16.93590 -16.53659 -16.24870 -16.09773 -15.57390 -15.26859 -15.02724 -14.83119 -14.49405 -14.35559 -14.23628 -13.94550 -13.76880 -13.42049 -13.30805 -13.25029 -13.02906 -12.94163 -12.83240 -12.75929 -12.61293 -12.55669 -12.43458 -12.22367 -12.08958 -11.86176 -11.75362 -11.62229 -11.29368 -11.12966 -10.65485 -10.02564 -9.60281 -9.45938 -8.26663 -6.40997 -0.74110 0.48477 0.52315 1.40624 1.42591 1.53726 1.67977 2.37633 2.81034 2.86965 3.06698 3.18383 3.43211 3.73748 3.82085 3.93102 4.03890 4.04253 4.08197 4.23615 4.28829 4.33484 4.43032 4.59374 4.65283 4.66924 4.70740 4.75205 4.79955 4.89605 4.90679 5.00237 5.12507 5.18174 5.21515 5.24385 5.25970 5.36310 5.44696 5.55799 5.67234 5.67805 5.69303 5.85160 6.04887 6.16847 6.72453 7.29312 8.85701 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003498 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.680580 B = 8001.527293 C = 8420.763568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 C -0.175 4.175 4 C -0.089 4.089 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.124 4.124 8 C -0.129 4.129 9 C -0.085 4.085 10 C -0.096 4.096 11 C 0.110 3.890 12 N -0.992 5.992 13 S 2.608 3.392 14 O -0.985 6.985 15 O -0.996 6.996 16 C -0.587 4.587 17 C 0.024 3.976 18 C -0.538 4.538 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.257 1.257 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -12.007 22.092 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.130 3.870 3 C -0.233 4.233 4 C -0.090 4.090 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.142 4.142 8 C -0.147 4.147 9 C -0.085 4.085 10 C -0.134 4.134 11 C -0.015 4.015 12 N -0.829 5.829 13 S 2.708 3.292 14 O -0.975 6.975 15 O -0.986 6.986 16 C -0.719 4.719 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.181 1.181 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.590 -11.894 21.707 24.887 hybrid contribution -0.667 0.721 -0.988 1.394 sum -3.257 -11.173 20.719 23.764 Atomic orbital electron populations 1.22319 0.91821 1.03770 1.03806 1.19242 0.94972 0.90825 0.81932 1.22700 1.03282 0.93795 1.03503 1.19704 1.00241 0.94725 0.94353 1.21328 1.00414 1.00499 0.91558 1.21377 0.98759 0.95762 0.98653 1.21399 0.98995 0.95540 0.98284 1.21414 1.00459 1.00950 0.91871 1.19695 0.98736 0.94369 0.95699 1.20842 1.00019 1.00787 0.91746 1.21682 1.01895 0.77399 1.00482 1.57790 1.80342 1.15771 1.29044 1.04868 0.77349 0.73638 0.73328 1.93583 1.67781 1.61064 1.75056 1.93455 1.76613 1.59203 1.69363 1.30458 1.19224 1.12036 1.10177 1.18792 0.97646 0.94059 0.90997 1.21499 0.93660 1.31002 1.11527 0.90534 1.26130 0.99487 0.96787 0.97822 1.70106 1.24175 1.39501 1.23640 0.85306 0.78746 0.78953 0.77230 1.19492 1.20871 1.18065 0.89356 0.91581 0.90876 0.91256 0.92829 0.88282 0.84523 0.83814 0.83888 0.84452 0.91601 0.86860 0.88647 0.88213 0.84151 0.84076 0.97606 0.97836 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.52 71.98 0.61 -2.40 16 2 C 0.22 5.28 0.91 2.86 0.00 5.28 16 3 C -0.17 -4.78 6.40 71.98 0.46 -4.32 16 4 C -0.09 -2.00 4.78 -19.82 -0.09 -2.09 16 5 C -0.12 -2.25 8.73 22.35 0.20 -2.06 16 6 C -0.13 -2.03 10.05 22.21 0.22 -1.81 16 7 C -0.12 -1.93 10.04 22.20 0.22 -1.70 16 8 C -0.13 -2.27 9.59 22.37 0.21 -2.05 16 9 C -0.08 -1.82 5.76 -19.85 -0.11 -1.94 16 10 C -0.10 -1.94 5.87 29.75 0.17 -1.77 16 11 C 0.11 2.49 6.30 86.17 0.54 3.04 16 12 N -0.99 -27.80 2.81 -473.87 -1.33 -29.13 16 13 S 2.61 98.69 4.88 -56.49 -0.28 98.42 16 14 O -0.98 -42.10 13.65 -127.65 -1.74 -43.85 16 15 O -1.00 -43.04 16.37 -127.65 -2.09 -45.13 16 16 C -0.59 -22.84 5.85 71.98 0.42 -22.42 16 17 C 0.02 1.27 4.98 29.85 0.15 1.42 16 18 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 19 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 21 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 22 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H 0.09 1.33 7.92 -2.39 -0.02 1.31 16 27 H 0.07 1.30 7.45 -2.39 -0.02 1.28 16 28 H 0.07 1.24 7.37 -2.38 -0.02 1.23 16 29 H 0.07 2.25 6.76 -2.39 -0.02 2.23 16 30 H 0.05 1.62 5.02 -2.39 -0.01 1.61 16 31 H 0.10 2.02 6.87 -2.39 -0.02 2.00 16 32 H 0.14 2.09 6.77 -2.91 -0.02 2.08 16 33 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.14 1.81 8.05 -2.91 -0.02 1.79 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 38 H 0.10 2.33 6.73 -2.39 -0.02 2.31 16 39 H 0.10 1.72 7.35 -2.39 -0.02 1.70 16 40 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 41 H 0.14 4.81 6.34 -2.39 -0.02 4.80 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.56 353.70 1.57 -73.99 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.99 Total: 19.60 kcal Atomic # 6 Polarization: -65.97 SS G_CDS: 3.71 Total: -62.26 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.05 Total: -86.04 kcal Atomic # 8 Polarization: -85.15 SS G_CDS: -3.83 Total: -88.98 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 98.69 SS G_CDS: -0.28 Total: 98.42 kcal Total: -75.56 1.57 -73.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334233641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.158 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds