Wall clock time and date at job start Tue Mar 31 2020 14:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38259 * 120.00131 * 2 1 4 4 C 1.38215 * 119.99934 * 180.25861 * 3 2 1 5 5 C 1.38260 * 120.00162 * 359.48224 * 4 3 2 6 6 C 1.50698 * 119.99910 * 180.27746 * 5 4 3 7 7 C 1.38213 * 119.99714 * 0.26387 * 5 4 3 8 8 S 1.76201 * 119.99785 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40187 * 177.15575 * 8 7 5 10 10 O 1.42104 * 106.39875 * 310.06923 * 8 7 5 11 11 N 1.65593 * 107.21916 * 63.60761 * 8 7 5 12 12 C 1.46915 * 120.63394 * 263.47434 * 11 8 7 13 13 C 1.52766 * 109.01005 * 233.58774 * 12 11 8 14 14 C 1.53042 * 109.38235 * 305.58438 * 13 12 11 15 15 C 1.50693 * 109.45206 * 181.25550 * 14 13 12 16 16 H 1.08006 * 120.00257 * 239.94512 * 15 14 13 17 17 C 1.37875 * 119.99967 * 59.93777 * 15 14 13 18 18 N 1.31505 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47066 * 60.00675 * 19 17 15 21 21 H 1.48505 * 109.46704 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47259 * 299.99846 * 19 17 15 23 23 C 1.53038 * 109.53402 * 61.24105 * 14 13 12 24 24 C 1.46934 * 120.62510 * 83.75921 * 11 8 7 25 25 C 1.38213 * 120.00278 * 179.76900 * 2 1 3 26 26 H 1.09001 * 109.47110 * 270.23448 * 1 2 3 27 27 H 1.09006 * 109.47144 * 30.23267 * 1 2 3 28 28 H 1.09001 * 109.47145 * 150.23519 * 1 2 3 29 29 H 1.07998 * 120.00054 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99987 * 179.76814 * 4 3 2 31 31 H 1.09000 * 109.46953 * 95.95375 * 6 5 4 32 32 H 1.09000 * 109.46881 * 215.95143 * 6 5 4 33 33 H 1.09001 * 109.47560 * 335.95333 * 6 5 4 34 34 H 1.08996 * 109.58733 * 353.41919 * 12 11 8 35 35 H 1.09000 * 109.58937 * 113.84749 * 12 11 8 36 36 H 1.09002 * 109.56573 * 185.55695 * 13 12 11 37 37 H 1.08994 * 109.38530 * 65.51577 * 13 12 11 38 38 H 1.09000 * 109.46001 * 301.22592 * 14 13 12 39 39 H 0.97001 * 119.99940 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.50068 * 178.68542 * 23 14 13 41 41 H 1.09000 * 109.52795 * 58.60101 * 23 14 13 42 42 H 1.09008 * 109.58074 * 246.15275 * 24 11 8 43 43 H 1.08992 * 109.58815 * 6.43110 * 24 11 8 44 44 H 1.08003 * 119.99628 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0004 7 6 3.5806 -1.1970 0.0053 8 16 4.4616 -2.7229 0.0115 9 8 3.4832 -3.7508 0.0839 10 8 5.4219 -2.6360 -1.0324 11 7 5.3161 -2.7898 1.4284 12 6 6.7287 -2.3884 1.4704 13 6 7.5505 -3.5229 2.0797 14 6 6.9633 -3.9007 3.4416 15 6 7.7912 -4.9987 4.0579 16 1 7.3364 -5.9488 4.2967 17 6 9.1294 -4.7906 4.3167 18 7 9.6831 -3.6338 4.0262 19 14 10.1558 -6.1521 5.0800 20 1 10.1433 -7.3402 4.1891 21 1 11.5525 -5.6795 5.2560 22 1 9.5875 -6.5186 6.4020 23 6 5.5238 -4.3877 3.2610 24 6 4.6774 -3.2578 2.6662 25 6 2.1980 -1.1969 0.0048 26 1 -0.3633 0.0042 1.0277 27 1 -0.3634 0.8879 -0.5175 28 1 -0.3633 -0.8921 -0.5102 29 1 1.6583 2.1327 0.0004 30 1 4.1204 2.1326 -0.0092 31 1 6.1417 -0.1021 1.0231 32 1 6.1422 -0.8345 -0.5992 33 1 6.1422 0.9367 -0.4223 34 1 7.0813 -2.1861 0.4591 35 1 6.8362 -1.4933 2.0830 36 1 8.5833 -3.1983 2.2064 37 1 7.5196 -4.3881 1.4175 38 1 6.9723 -3.0286 4.0955 39 1 10.6245 -3.4873 4.2087 40 1 5.1140 -4.6786 4.2282 41 1 5.5109 -5.2448 2.5877 42 1 4.6142 -2.4349 3.3783 43 1 3.6761 -3.6264 2.4440 44 1 1.6580 -2.1322 0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334816595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:54 Heat of formation + Delta-G solvation = -59.434841 kcal Electronic energy + Delta-G solvation = -26275.967277 eV Core-core repulsion = 22705.622515 eV Total energy + Delta-G solvation = -3570.344762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.65854 -37.79277 -37.17172 -35.63168 -34.13323 -33.39013 -31.38459 -30.90530 -30.18950 -29.34052 -25.78335 -25.12676 -23.46329 -22.50388 -22.28472 -21.45652 -19.50917 -18.29190 -17.48464 -16.93681 -16.28737 -16.03857 -15.81113 -15.24378 -14.55172 -14.43954 -14.31877 -14.01093 -13.71283 -13.35005 -13.15706 -13.04708 -12.95074 -12.73112 -12.68775 -12.38189 -12.27764 -12.02641 -11.92686 -11.80845 -11.51941 -11.39761 -11.28579 -10.91716 -10.82380 -10.64188 -10.50133 -10.33089 -10.03822 -9.57543 -9.44550 -9.19408 -8.96058 -8.71519 -8.40274 -8.24948 -6.00084 -4.05791 0.53009 0.79488 1.13412 3.10629 3.32263 3.36857 3.39981 3.41972 3.94424 4.38755 4.43559 4.57642 4.65578 4.75640 4.95810 5.02192 5.17363 5.28947 5.30132 5.34581 5.40142 5.51719 5.57557 5.71556 5.78526 5.79987 5.87226 5.94727 6.05513 6.10092 6.14611 6.21940 6.24914 6.36483 6.45807 6.49586 6.72711 6.74230 6.93381 7.09934 7.22656 7.43220 7.72488 7.97217 8.08830 8.44195 8.97449 9.59049 11.05474 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.003538 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.684749 B = 7912.257903 C = 8184.280868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.142 4.142 5 C 0.021 3.979 6 C -0.181 4.181 7 C -0.674 4.674 8 S 2.689 3.311 9 O -0.964 6.964 10 O -0.958 6.958 11 N -0.986 5.986 12 C 0.112 3.888 13 C -0.122 4.122 14 C 0.051 3.949 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.120 4.120 24 C 0.122 3.878 25 C -0.021 4.021 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 11.103 -7.363 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.161 4.161 5 C 0.020 3.980 6 C -0.237 4.237 7 C -0.760 4.760 8 S 2.780 3.220 9 O -0.954 6.954 10 O -0.949 6.949 11 N -0.826 5.826 12 C -0.012 4.012 13 C -0.162 4.162 14 C 0.032 3.968 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.160 4.160 24 C -0.003 4.003 25 C -0.040 4.040 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.019 10.594 -8.013 19.313 hybrid contribution 0.328 0.135 0.727 0.809 sum -13.691 10.729 -7.286 18.859 Atomic orbital electron populations 1.20787 0.90618 1.02976 1.02596 1.19997 0.96439 0.93122 1.02434 1.21284 0.94291 0.97646 0.95247 1.21175 0.94290 0.97746 1.02851 1.19573 0.96037 0.91751 0.90632 1.21903 0.90368 1.06321 1.05115 1.31077 1.06191 1.20593 1.18092 1.02030 0.73088 0.73662 0.73226 1.93526 1.61675 1.53751 1.86459 1.93511 1.60370 1.86884 1.54107 1.57509 1.20765 1.79616 1.24736 1.21898 0.78307 0.99612 1.01350 1.21932 1.01555 0.95096 0.97616 1.18598 0.88994 0.96429 0.92777 1.21189 0.94262 0.99562 1.40066 0.92735 1.24950 0.97902 0.95489 0.95609 1.69818 1.12413 1.22705 1.48142 0.86682 0.79218 0.82420 0.79794 1.20327 1.21376 1.20387 1.21965 0.98367 0.96331 0.99299 1.21541 0.95832 0.97963 0.84929 1.20841 0.91913 0.98830 0.92435 0.90966 0.91480 0.91225 0.85531 0.85216 0.88623 0.87539 0.90049 0.90123 0.91955 0.87661 0.94095 0.95425 0.92957 0.92103 0.92629 0.92047 0.90701 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.12 -1.29 5.88 -104.63 -0.62 -1.91 16 3 C -0.07 -0.67 9.70 -39.58 -0.38 -1.05 16 4 C -0.14 -1.56 9.68 -39.58 -0.38 -1.95 16 5 C 0.02 0.28 5.87 -104.62 -0.61 -0.33 16 6 C -0.18 -2.24 8.15 36.00 0.29 -1.95 16 7 C -0.67 -9.71 5.90 -39.58 -0.23 -9.95 16 8 S 2.69 45.04 5.10 -107.50 -0.55 44.49 16 9 O -0.96 -17.79 15.75 -57.17 -0.90 -18.69 16 10 O -0.96 -17.74 14.15 -57.17 -0.81 -18.55 16 11 N -0.99 -16.86 3.23 -113.77 -0.37 -17.23 16 12 C 0.11 2.02 4.51 -3.94 -0.02 2.00 16 13 C -0.12 -2.73 5.14 -26.83 -0.14 -2.87 16 14 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 15 C -0.51 -13.61 8.56 -34.44 -0.29 -13.90 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.36 11.31 55.43 0.63 -23.74 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 24 C 0.12 2.06 6.46 -3.71 -0.02 2.03 16 25 C -0.02 -0.27 9.20 -39.58 -0.36 -0.64 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.10 1.15 5.87 -51.93 -0.30 0.84 16 32 H 0.11 1.50 4.06 -51.93 -0.21 1.29 16 33 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.08 1.36 5.51 -51.93 -0.29 1.07 16 35 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 36 H 0.11 2.59 6.03 -51.93 -0.31 2.28 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.07 1.15 7.08 -51.93 -0.37 0.78 16 44 H 0.14 1.71 7.34 -52.48 -0.39 1.33 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.81 350.15 -10.99 -41.80 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.41 Total: 1.77 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -2.84 Total: -31.03 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.26 Total: -40.96 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.71 Total: -37.24 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.55 Total: 44.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.81 -10.99 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.632 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds