Wall clock time and date at job start Tue Mar 31 2020 14:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38259 * 120.00131 * 2 1 4 4 C 1.38215 * 119.99934 * 180.25861 * 3 2 1 5 5 C 1.38260 * 120.00162 * 359.48224 * 4 3 2 6 6 C 1.50698 * 119.99910 * 180.27746 * 5 4 3 7 7 C 1.38213 * 119.99714 * 0.26387 * 5 4 3 8 8 S 1.76201 * 119.99785 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40187 * 177.15575 * 8 7 5 10 10 O 1.42104 * 106.39875 * 310.06923 * 8 7 5 11 11 N 1.65593 * 107.21916 * 63.60761 * 8 7 5 12 12 C 1.46915 * 120.63394 * 263.47434 * 11 8 7 13 13 C 1.52766 * 109.01005 * 233.58774 * 12 11 8 14 14 C 1.53042 * 109.38235 * 305.58438 * 13 12 11 15 15 C 1.50693 * 109.45206 * 181.25550 * 14 13 12 16 16 H 1.08006 * 120.00257 * 239.94512 * 15 14 13 17 17 C 1.37875 * 119.99967 * 59.93777 * 15 14 13 18 18 N 1.31505 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99762 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47066 * 60.00675 * 19 17 15 21 21 H 1.48505 * 109.46704 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47259 * 299.99846 * 19 17 15 23 23 C 1.53038 * 109.53402 * 61.24105 * 14 13 12 24 24 C 1.46934 * 120.62510 * 83.75921 * 11 8 7 25 25 C 1.38213 * 120.00278 * 179.76900 * 2 1 3 26 26 H 1.09001 * 109.47110 * 270.23448 * 1 2 3 27 27 H 1.09006 * 109.47144 * 30.23267 * 1 2 3 28 28 H 1.09001 * 109.47145 * 150.23519 * 1 2 3 29 29 H 1.07998 * 120.00054 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99987 * 179.76814 * 4 3 2 31 31 H 1.09000 * 109.46953 * 95.95375 * 6 5 4 32 32 H 1.09000 * 109.46881 * 215.95143 * 6 5 4 33 33 H 1.09001 * 109.47560 * 335.95333 * 6 5 4 34 34 H 1.08996 * 109.58733 * 353.41919 * 12 11 8 35 35 H 1.09000 * 109.58937 * 113.84749 * 12 11 8 36 36 H 1.09002 * 109.56573 * 185.55695 * 13 12 11 37 37 H 1.08994 * 109.38530 * 65.51577 * 13 12 11 38 38 H 1.09000 * 109.46001 * 301.22592 * 14 13 12 39 39 H 0.97001 * 119.99940 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.50068 * 178.68542 * 23 14 13 41 41 H 1.09000 * 109.52795 * 58.60101 * 23 14 13 42 42 H 1.09008 * 109.58074 * 246.15275 * 24 11 8 43 43 H 1.08992 * 109.58815 * 6.43110 * 24 11 8 44 44 H 1.08003 * 119.99628 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0004 7 6 3.5806 -1.1970 0.0053 8 16 4.4616 -2.7229 0.0115 9 8 3.4832 -3.7508 0.0839 10 8 5.4219 -2.6360 -1.0324 11 7 5.3161 -2.7898 1.4284 12 6 6.7287 -2.3884 1.4704 13 6 7.5505 -3.5229 2.0797 14 6 6.9633 -3.9007 3.4416 15 6 7.7912 -4.9987 4.0579 16 1 7.3364 -5.9488 4.2967 17 6 9.1294 -4.7906 4.3167 18 7 9.6831 -3.6338 4.0262 19 14 10.1558 -6.1521 5.0800 20 1 10.1433 -7.3402 4.1891 21 1 11.5525 -5.6795 5.2560 22 1 9.5875 -6.5186 6.4020 23 6 5.5238 -4.3877 3.2610 24 6 4.6774 -3.2578 2.6662 25 6 2.1980 -1.1969 0.0048 26 1 -0.3633 0.0042 1.0277 27 1 -0.3634 0.8879 -0.5175 28 1 -0.3633 -0.8921 -0.5102 29 1 1.6583 2.1327 0.0004 30 1 4.1204 2.1326 -0.0092 31 1 6.1417 -0.1021 1.0231 32 1 6.1422 -0.8345 -0.5992 33 1 6.1422 0.9367 -0.4223 34 1 7.0813 -2.1861 0.4591 35 1 6.8362 -1.4933 2.0830 36 1 8.5833 -3.1983 2.2064 37 1 7.5196 -4.3881 1.4175 38 1 6.9723 -3.0286 4.0955 39 1 10.6245 -3.4873 4.2087 40 1 5.1140 -4.6786 4.2282 41 1 5.5109 -5.2448 2.5877 42 1 4.6142 -2.4349 3.3783 43 1 3.6761 -3.6264 2.4440 44 1 1.6580 -2.1322 0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334816595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:53 Heat of formation + Delta-G solvation = -77.397406 kcal Electronic energy + Delta-G solvation = -26276.746192 eV Core-core repulsion = 22705.622515 eV Total energy + Delta-G solvation = -3571.123677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52845 -39.36347 -38.54458 -37.02174 -35.37393 -34.85685 -32.64856 -32.27981 -31.76976 -30.17320 -27.64079 -25.97510 -24.44434 -24.10268 -23.88753 -22.36580 -21.13818 -19.63843 -18.93217 -18.19109 -18.05757 -17.26461 -16.68779 -16.54547 -16.34563 -15.42263 -15.38205 -15.26528 -14.96222 -14.89584 -14.48115 -14.44822 -14.06189 -13.96341 -13.78328 -13.65776 -13.37295 -13.36118 -13.08522 -12.96513 -12.82268 -12.75442 -12.57819 -12.52929 -12.39312 -12.17971 -12.03012 -11.83541 -11.58153 -11.37539 -10.96413 -10.76593 -10.37424 -10.34529 -9.85877 -9.54855 -8.04695 -6.17181 -0.70836 -0.19433 0.26803 1.43570 1.44568 1.51543 1.88087 2.45253 2.46508 2.70450 3.21767 3.24270 3.68299 3.78705 3.79987 3.93705 4.18169 4.25366 4.29715 4.37868 4.45956 4.47780 4.60463 4.62715 4.69953 4.76490 4.79760 4.83584 4.84420 4.89590 4.93553 5.08180 5.11615 5.17063 5.29133 5.30308 5.34085 5.35885 5.45407 5.57550 5.65094 5.73529 5.90290 6.05458 6.18562 6.44417 6.92802 7.49975 8.98608 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.003538 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.684749 B = 7912.257903 C = 8184.280868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.060 4.060 4 C -0.142 4.142 5 C 0.004 3.996 6 C -0.184 4.184 7 C -0.683 4.683 8 S 2.696 3.304 9 O -0.988 6.988 10 O -0.984 6.984 11 N -0.990 5.990 12 C 0.123 3.877 13 C -0.118 4.118 14 C 0.048 3.952 15 C -0.536 4.536 16 H 0.048 0.952 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.117 4.117 24 C 0.125 3.875 25 C -0.042 4.042 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.021 0.979 38 H 0.010 0.990 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 13.363 -7.375 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.161 4.161 5 C 0.003 3.997 6 C -0.240 4.240 7 C -0.772 4.772 8 S 2.792 3.208 9 O -0.979 6.979 10 O -0.974 6.974 11 N -0.829 5.829 12 C -0.001 4.001 13 C -0.158 4.158 14 C 0.029 3.971 15 C -0.574 4.574 16 H 0.066 0.934 17 C -0.182 4.182 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.156 4.156 24 C 0.001 3.999 25 C -0.061 4.061 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.176 0.824 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.832 12.803 -8.019 21.883 hybrid contribution 0.819 -0.495 0.704 1.188 sum -15.012 12.308 -7.315 20.745 Atomic orbital electron populations 1.20878 0.88360 1.04165 1.03620 1.20389 0.98136 0.92540 1.00959 1.21771 0.94149 0.98824 0.93017 1.21553 0.95019 0.97898 1.01586 1.19766 0.96339 0.92201 0.91424 1.21906 0.90366 1.06808 1.04924 1.30514 1.06600 1.19079 1.21051 1.01441 0.72615 0.74219 0.72501 1.93485 1.62020 1.55757 1.86597 1.93478 1.61431 1.87592 1.54916 1.57420 1.20454 1.80135 1.24887 1.21700 0.78350 0.98191 1.01842 1.21754 1.01069 0.95916 0.97076 1.18566 0.90884 0.94966 0.92645 1.21579 0.95143 1.00179 1.40543 0.93415 1.25629 0.98944 0.97480 0.96150 1.69935 1.12536 1.23951 1.48635 0.85786 0.77879 0.79903 0.79073 1.20325 1.20904 1.19798 1.21867 0.96935 0.97048 0.99796 1.21549 0.95775 0.97480 0.85146 1.21020 0.91497 1.00066 0.93529 0.89911 0.89347 0.91087 0.81827 0.82376 0.88592 0.89641 0.87541 0.89139 0.90293 0.90212 0.96051 0.97181 0.92989 0.91269 0.94047 0.90033 0.88942 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.23 0.71 -0.64 16 2 C -0.12 -2.22 5.88 -19.87 -0.12 -2.34 16 3 C -0.06 -0.95 9.70 22.27 0.22 -0.73 16 4 C -0.14 -2.61 9.68 22.27 0.22 -2.39 16 5 C 0.00 0.10 5.87 -19.87 -0.12 -0.02 16 6 C -0.18 -4.31 8.15 71.24 0.58 -3.73 16 7 C -0.68 -18.98 5.90 22.27 0.13 -18.85 16 8 S 2.70 91.06 5.10 -56.49 -0.29 90.77 16 9 O -0.99 -36.94 15.75 -128.00 -2.02 -38.96 16 10 O -0.98 -37.26 14.15 -128.00 -1.81 -39.07 16 11 N -0.99 -33.93 3.23 -513.84 -1.66 -35.59 16 12 C 0.12 4.50 4.51 86.22 0.39 4.89 16 13 C -0.12 -5.49 5.14 30.53 0.16 -5.34 16 14 C 0.05 2.32 2.07 -11.52 -0.02 2.30 16 15 C -0.54 -29.24 8.56 25.60 0.22 -29.02 16 16 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 17 C 0.02 0.92 5.30 84.66 0.45 1.37 16 18 N -0.91 -50.83 11.31 21.44 0.24 -50.59 16 19 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.12 -4.76 5.30 30.67 0.16 -4.59 16 24 C 0.13 4.15 6.46 86.36 0.56 4.71 16 25 C -0.04 -1.02 9.20 22.27 0.20 -0.82 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.70 8.09 -2.38 -0.02 0.68 16 28 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.10 2.19 5.87 -2.39 -0.01 2.17 16 32 H 0.09 2.39 4.06 -2.39 -0.01 2.38 16 33 H 0.11 1.87 8.05 -2.39 -0.02 1.85 16 34 H 0.09 3.12 5.51 -2.39 -0.01 3.10 16 35 H 0.08 2.61 6.90 -2.39 -0.02 2.60 16 36 H 0.08 4.10 6.03 -2.39 -0.01 4.09 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.09 2.75 7.08 -2.39 -0.02 2.74 16 44 H 0.14 3.32 7.34 -2.91 -0.02 3.30 16 Total: -1.00 -68.06 350.15 1.23 -66.82 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.00 Total: 16.37 kcal Atomic # 6 Polarization: -58.95 SS G_CDS: 3.74 Total: -55.21 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.42 Total: -86.18 kcal Atomic # 8 Polarization: -74.20 SS G_CDS: -3.83 Total: -78.03 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 91.06 SS G_CDS: -0.29 Total: 90.77 kcal Total: -68.06 1.23 -66.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.573 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds