Wall clock time and date at job start Tue Mar 31 2020 14:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.00004 * 2 1 4 4 C 1.38215 * 119.99823 * 180.27732 * 3 2 1 5 5 C 1.38261 * 120.00189 * 359.74527 * 4 3 2 6 6 C 1.38214 * 119.99731 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00007 * 179.75044 * 2 1 3 8 8 S 1.76194 * 120.00099 * 359.97438 * 7 2 1 9 9 O 1.42100 * 106.40256 * 181.19132 * 8 7 2 10 10 O 1.42105 * 106.40095 * 48.27251 * 8 7 2 11 11 N 1.65601 * 107.22148 * 294.73657 * 8 7 2 12 12 C 1.46919 * 120.63434 * 89.99515 * 11 8 7 13 13 C 1.53195 * 108.89273 * 126.34385 * 12 11 8 14 14 C 1.53346 * 109.14901 * 54.57640 * 13 12 11 15 15 C 1.53004 * 109.41904 * 178.67276 * 14 13 12 16 16 C 1.50701 * 109.47085 * 295.13082 * 15 14 13 17 17 H 1.07998 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00682 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99519 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47133 * 60.00060 * 20 18 16 22 22 H 1.48503 * 109.46942 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47295 * 299.99976 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 14 13 12 25 25 C 1.46933 * 120.62562 * 270.01589 * 11 8 7 26 26 H 1.08996 * 109.47038 * 270.25268 * 1 2 3 27 27 H 1.09000 * 109.47036 * 30.25180 * 1 2 3 28 28 H 1.08995 * 109.46975 * 150.25517 * 1 2 3 29 29 H 1.07992 * 120.00143 * 0.04303 * 3 2 1 30 30 H 1.07994 * 120.00018 * 179.76796 * 4 3 2 31 31 H 1.07993 * 120.00131 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00197 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20335 * 12 11 8 34 34 H 1.08996 * 109.58750 * 6.48520 * 12 11 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 13 12 11 36 36 H 1.09002 * 109.49585 * 294.75599 * 13 12 11 37 37 H 1.09001 * 109.42242 * 58.75065 * 14 13 12 38 38 H 1.09001 * 109.46592 * 55.13132 * 15 14 13 39 39 H 1.08997 * 109.47133 * 175.12697 * 15 14 13 40 40 H 0.97001 * 120.00836 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.50232 * 301.42239 * 24 14 13 42 42 H 1.09007 * 109.52628 * 181.33900 * 24 14 13 43 43 H 1.08994 * 109.58580 * 353.37875 * 25 11 8 44 44 H 1.09006 * 109.57831 * 113.65367 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0063 6 6 3.5806 -1.1970 -0.0004 7 6 2.1981 -1.1970 0.0052 8 16 1.3171 -2.7229 0.0125 9 8 2.2968 -3.7516 0.0452 10 8 0.3303 -2.6213 -1.0050 11 7 0.4993 -2.8100 1.4499 12 6 -0.8649 -2.2776 1.5685 13 6 -1.7786 -3.3741 2.1249 14 6 -1.1897 -3.9007 3.4392 15 6 -2.1149 -4.9734 4.0175 16 6 -3.4355 -4.3502 4.3898 17 1 -3.5986 -3.2946 4.2304 18 6 -4.4356 -5.1278 4.9340 19 7 -4.2370 -6.4131 5.1287 20 14 -6.0723 -4.3552 5.3962 21 1 -6.6977 -3.7604 4.1878 22 1 -6.9703 -5.3964 5.9574 23 1 -5.8500 -3.2945 6.4115 24 6 0.1913 -4.5058 3.1772 25 6 1.1245 -3.4207 2.6310 26 1 -0.3633 0.0045 1.0276 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3633 -0.8922 -0.5098 29 1 1.6583 2.1326 0.0007 30 1 4.1204 2.1326 -0.0096 31 1 5.3517 0.0000 -0.0104 32 1 4.1206 -2.1323 -0.0012 33 1 -0.8661 -1.4228 2.2449 34 1 -1.2226 -1.9672 0.5868 35 1 -2.7717 -2.9629 2.3062 36 1 -1.8479 -4.1898 1.4052 37 1 -1.0974 -3.0793 4.1498 38 1 -2.2778 -5.7525 3.2728 39 1 -1.6558 -5.4093 4.9048 40 1 -4.9404 -6.9601 5.5119 41 1 0.1034 -5.3109 2.4478 42 1 0.5985 -4.9010 4.1080 43 1 2.0785 -3.8667 2.3499 44 1 1.2879 -2.6586 3.3930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:44 Heat of formation + Delta-G solvation = -58.710802 kcal Electronic energy + Delta-G solvation = -25990.595474 eV Core-core repulsion = 22420.282109 eV Total energy + Delta-G solvation = -3570.313365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.61846 -38.34919 -37.42658 -35.87217 -34.03678 -33.14947 -31.91679 -31.51178 -30.76501 -27.68572 -27.27763 -24.25221 -23.48206 -22.90173 -22.03535 -21.36906 -19.62080 -18.81759 -17.83638 -17.41824 -16.31122 -16.17045 -16.03140 -15.31206 -14.76433 -14.54745 -14.38536 -14.30980 -13.96934 -13.58742 -13.52494 -13.34050 -13.23421 -12.86364 -12.60138 -12.42179 -12.21875 -12.00722 -11.80400 -11.72649 -11.63823 -11.52900 -11.15059 -10.89668 -10.74511 -10.71850 -10.64144 -10.35245 -10.10711 -9.67108 -9.59015 -9.34563 -9.08725 -8.97160 -8.65505 -8.33140 -5.98018 -3.99966 0.29551 0.60776 0.99641 2.87528 3.26088 3.33236 3.38470 3.39840 3.71112 4.20635 4.43709 4.46568 4.53689 4.61748 4.82363 4.90583 5.06482 5.22163 5.26572 5.35812 5.36923 5.42684 5.48380 5.52765 5.55770 5.70167 5.74486 5.80936 5.85545 5.96283 5.99151 6.04003 6.07357 6.14378 6.43281 6.44023 6.56050 6.68602 6.70304 7.01632 7.05035 7.14954 7.69007 7.84621 8.02050 8.44322 9.06455 9.63651 11.13240 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.003256 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.440071 B = 8598.283011 C = 9082.693817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.025 3.975 3 C -0.146 4.146 4 C -0.064 4.064 5 C -0.150 4.150 6 C -0.020 4.020 7 C -0.680 4.680 8 S 2.691 3.309 9 O -0.960 6.960 10 O -0.955 6.955 11 N -0.989 5.989 12 C 0.108 3.892 13 C -0.117 4.117 14 C -0.079 4.079 15 C 0.027 3.973 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.127 4.127 25 C 0.120 3.880 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.744 15.049 -9.659 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.023 3.977 3 C -0.165 4.165 4 C -0.083 4.083 5 C -0.169 4.169 6 C -0.039 4.039 7 C -0.766 4.766 8 S 2.782 3.218 9 O -0.950 6.950 10 O -0.945 6.945 11 N -0.829 5.829 12 C -0.016 4.016 13 C -0.156 4.156 14 C -0.098 4.098 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.166 4.166 25 C -0.005 4.005 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.663 14.284 -10.259 23.550 hybrid contribution -0.582 1.174 0.636 1.456 sum 15.081 15.458 -9.623 23.643 Atomic orbital electron populations 1.22027 0.90479 1.06932 1.04689 1.19589 0.95996 0.91823 0.90259 1.21201 0.94484 0.97783 1.02991 1.21448 0.94443 0.98357 0.94009 1.21265 1.00339 0.92445 1.02877 1.20989 0.91979 0.99535 0.91386 1.31008 1.06411 1.20325 1.18810 1.01994 0.73190 0.73581 0.72995 1.93538 1.61356 1.53838 1.86276 1.93518 1.58929 1.86728 1.55331 1.57538 1.24677 1.73094 1.27586 1.21994 0.80170 0.97454 1.01995 1.21936 0.98615 0.97360 0.97654 1.21215 0.93356 0.99582 0.95639 1.19133 0.93127 0.93077 0.95705 1.21207 0.98424 0.94934 1.40916 0.92633 1.25017 0.98646 0.94828 0.95965 1.69945 1.33616 1.05147 1.44790 0.86713 0.83938 0.78864 0.78779 1.20257 1.21417 1.20361 1.21978 0.96495 0.97221 1.00868 1.21555 0.96334 0.96085 0.86498 0.88810 0.89760 0.87326 0.85167 0.85374 0.85155 0.83998 0.91494 0.89191 0.89628 0.92033 0.92343 0.96549 0.96619 0.93004 0.91785 0.91020 0.89659 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 8.04 36.00 0.29 -1.55 16 2 C 0.02 0.27 5.87 -104.62 -0.61 -0.34 16 3 C -0.15 -1.33 9.70 -39.58 -0.38 -1.72 16 4 C -0.06 -0.53 10.05 -39.58 -0.40 -0.92 16 5 C -0.15 -1.33 10.05 -39.58 -0.40 -1.72 16 6 C -0.02 -0.21 9.55 -39.58 -0.38 -0.59 16 7 C -0.68 -8.25 5.91 -39.58 -0.23 -8.48 16 8 S 2.69 38.03 5.19 -107.50 -0.56 37.47 16 9 O -0.96 -15.37 15.56 -57.17 -0.89 -16.26 16 10 O -0.95 -15.32 14.33 -57.17 -0.82 -16.14 16 11 N -0.99 -13.59 3.28 -113.52 -0.37 -13.96 16 12 C 0.11 1.48 4.54 -3.71 -0.02 1.46 16 13 C -0.12 -2.03 5.21 -26.45 -0.14 -2.17 16 14 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16 15 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 16 C -0.52 -13.91 8.39 -34.44 -0.29 -14.20 16 17 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.58 13.28 55.43 0.74 -25.84 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.13 -2.06 5.36 -26.62 -0.14 -2.20 16 25 C 0.12 1.62 6.48 -3.71 -0.02 1.59 16 26 H 0.09 0.82 6.11 -51.93 -0.32 0.51 16 27 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.11 1.26 3.42 -51.93 -0.18 1.09 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.14 1.41 7.33 -52.48 -0.38 1.03 16 33 H 0.07 0.79 7.14 -51.93 -0.37 0.42 16 34 H 0.09 1.13 4.97 -51.93 -0.26 0.87 16 35 H 0.09 1.56 6.93 -51.93 -0.36 1.20 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 43 H 0.09 1.07 6.92 -51.93 -0.36 0.71 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -32.98 351.09 -11.15 -44.13 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.38 Total: -0.37 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -3.14 Total: -30.53 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.36 Total: -39.80 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.71 Total: -32.40 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 38.03 SS G_CDS: -0.56 Total: 37.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.98 -11.15 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.580 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds