Wall clock time and date at job start Tue Mar 31 2020 14:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.00004 * 2 1 4 4 C 1.38215 * 119.99823 * 180.27732 * 3 2 1 5 5 C 1.38261 * 120.00189 * 359.74527 * 4 3 2 6 6 C 1.38214 * 119.99731 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00007 * 179.75044 * 2 1 3 8 8 S 1.76194 * 120.00099 * 359.97438 * 7 2 1 9 9 O 1.42100 * 106.40256 * 181.19132 * 8 7 2 10 10 O 1.42105 * 106.40095 * 48.27251 * 8 7 2 11 11 N 1.65601 * 107.22148 * 294.73657 * 8 7 2 12 12 C 1.46919 * 120.63434 * 89.99515 * 11 8 7 13 13 C 1.53195 * 108.89273 * 126.34385 * 12 11 8 14 14 C 1.53346 * 109.14901 * 54.57640 * 13 12 11 15 15 C 1.53004 * 109.41904 * 178.67276 * 14 13 12 16 16 C 1.50701 * 109.47085 * 295.13082 * 15 14 13 17 17 H 1.07998 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00682 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99519 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47133 * 60.00060 * 20 18 16 22 22 H 1.48503 * 109.46942 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47295 * 299.99976 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 14 13 12 25 25 C 1.46933 * 120.62562 * 270.01589 * 11 8 7 26 26 H 1.08996 * 109.47038 * 270.25268 * 1 2 3 27 27 H 1.09000 * 109.47036 * 30.25180 * 1 2 3 28 28 H 1.08995 * 109.46975 * 150.25517 * 1 2 3 29 29 H 1.07992 * 120.00143 * 0.04303 * 3 2 1 30 30 H 1.07994 * 120.00018 * 179.76796 * 4 3 2 31 31 H 1.07993 * 120.00131 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00197 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.58751 * 246.20335 * 12 11 8 34 34 H 1.08996 * 109.58750 * 6.48520 * 12 11 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 13 12 11 36 36 H 1.09002 * 109.49585 * 294.75599 * 13 12 11 37 37 H 1.09001 * 109.42242 * 58.75065 * 14 13 12 38 38 H 1.09001 * 109.46592 * 55.13132 * 15 14 13 39 39 H 1.08997 * 109.47133 * 175.12697 * 15 14 13 40 40 H 0.97001 * 120.00836 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.50232 * 301.42239 * 24 14 13 42 42 H 1.09007 * 109.52628 * 181.33900 * 24 14 13 43 43 H 1.08994 * 109.58580 * 353.37875 * 25 11 8 44 44 H 1.09006 * 109.57831 * 113.65367 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0063 6 6 3.5806 -1.1970 -0.0004 7 6 2.1981 -1.1970 0.0052 8 16 1.3171 -2.7229 0.0125 9 8 2.2968 -3.7516 0.0452 10 8 0.3303 -2.6213 -1.0050 11 7 0.4993 -2.8100 1.4499 12 6 -0.8649 -2.2776 1.5685 13 6 -1.7786 -3.3741 2.1249 14 6 -1.1897 -3.9007 3.4392 15 6 -2.1149 -4.9734 4.0175 16 6 -3.4355 -4.3502 4.3898 17 1 -3.5986 -3.2946 4.2304 18 6 -4.4356 -5.1278 4.9340 19 7 -4.2370 -6.4131 5.1287 20 14 -6.0723 -4.3552 5.3962 21 1 -6.6977 -3.7604 4.1878 22 1 -6.9703 -5.3964 5.9574 23 1 -5.8500 -3.2945 6.4115 24 6 0.1913 -4.5058 3.1772 25 6 1.1245 -3.4207 2.6310 26 1 -0.3633 0.0045 1.0276 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3633 -0.8922 -0.5098 29 1 1.6583 2.1326 0.0007 30 1 4.1204 2.1326 -0.0096 31 1 5.3517 0.0000 -0.0104 32 1 4.1206 -2.1323 -0.0012 33 1 -0.8661 -1.4228 2.2449 34 1 -1.2226 -1.9672 0.5868 35 1 -2.7717 -2.9629 2.3062 36 1 -1.8479 -4.1898 1.4052 37 1 -1.0974 -3.0793 4.1498 38 1 -2.2778 -5.7525 3.2728 39 1 -1.6558 -5.4093 4.9048 40 1 -4.9404 -6.9601 5.5119 41 1 0.1034 -5.3109 2.4478 42 1 0.5985 -4.9010 4.1080 43 1 2.0785 -3.8667 2.3499 44 1 1.2879 -2.6586 3.3930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:43 Heat of formation + Delta-G solvation = -79.071865 kcal Electronic energy + Delta-G solvation = -25991.478396 eV Core-core repulsion = 22420.282109 eV Total energy + Delta-G solvation = -3571.196287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32628 -39.65105 -38.57596 -37.03980 -35.72569 -34.06592 -33.60120 -32.22518 -31.98909 -29.47484 -28.01616 -25.97311 -24.31728 -24.09114 -23.07986 -22.64260 -21.04144 -19.87050 -18.95515 -18.41757 -18.35399 -17.23878 -16.75018 -16.51664 -16.20313 -15.54671 -15.45522 -15.32124 -15.26028 -14.85715 -14.77554 -14.51887 -14.26280 -14.00309 -13.73299 -13.43483 -13.34691 -13.29961 -13.18557 -13.12564 -12.80992 -12.69803 -12.54401 -12.43988 -12.20323 -12.12743 -11.98072 -11.77482 -11.53759 -11.27783 -10.94145 -10.80757 -10.48272 -10.38835 -9.93749 -9.75074 -8.13351 -6.22748 -0.72987 -0.17928 0.30663 1.43079 1.45705 1.52932 1.86430 2.45124 2.50377 2.70791 3.20178 3.22050 3.67007 3.74210 3.82659 4.03348 4.08164 4.08541 4.27685 4.31604 4.37092 4.45282 4.49749 4.58767 4.60659 4.68570 4.71773 4.81725 4.89802 4.92216 4.98762 5.08293 5.15458 5.24262 5.30984 5.35295 5.37812 5.39326 5.40449 5.45530 5.61210 5.67899 5.86692 5.90352 5.94505 6.33028 6.94435 7.45837 8.98537 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.003256 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.440071 B = 8598.283011 C = 9082.693817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 C -0.149 4.149 4 C -0.058 4.058 5 C -0.151 4.151 6 C -0.039 4.039 7 C -0.689 4.689 8 S 2.697 3.303 9 O -0.988 6.988 10 O -0.982 6.982 11 N -0.992 5.992 12 C 0.115 3.885 13 C -0.116 4.116 14 C -0.071 4.071 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.126 4.126 25 C 0.125 3.875 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.069 0.931 38 H -0.019 1.019 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.773 19.039 -9.657 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.008 3.992 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.170 4.170 6 C -0.059 4.059 7 C -0.779 4.779 8 S 2.793 3.207 9 O -0.978 6.978 10 O -0.973 6.973 11 N -0.831 5.831 12 C -0.009 4.009 13 C -0.156 4.156 14 C -0.090 4.090 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.785 3.215 21 H -0.191 1.191 22 H -0.216 1.216 23 H -0.190 1.190 24 C -0.165 4.165 25 C 0.000 4.000 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.000 1.000 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.679 18.248 -10.264 26.768 hybrid contribution -0.821 -0.042 0.607 1.022 sum 15.857 18.206 -9.657 26.003 Atomic orbital electron populations 1.22063 0.90163 1.06909 1.05431 1.19813 0.96526 0.92116 0.90713 1.21574 0.95201 0.97999 1.02006 1.21923 0.94343 0.99518 0.91837 1.21634 1.01826 0.91837 1.01662 1.21181 0.91683 1.00724 0.92282 1.30515 1.06771 1.19004 1.21577 1.01429 0.72692 0.74029 0.72523 1.93493 1.61917 1.55858 1.86555 1.93485 1.59994 1.87408 1.56371 1.57457 1.24805 1.73500 1.27373 1.21988 0.79275 0.96538 1.03139 1.21865 0.99229 0.98030 0.96428 1.21063 0.93572 0.98000 0.96354 1.19048 0.93999 0.93837 0.93800 1.21673 0.99166 0.95610 1.39992 0.91329 1.25979 1.02846 0.95258 0.96103 1.70106 1.34905 1.06833 1.46135 0.85572 0.78967 0.78012 0.78921 1.19115 1.21613 1.18981 1.21927 0.95834 0.97806 1.00932 1.21567 0.95631 0.95817 0.86984 0.87658 0.87731 0.89359 0.82558 0.81892 0.82458 0.84089 0.88537 0.88047 0.90565 0.94199 0.91266 1.00034 0.99370 0.93118 0.93643 0.90476 0.88667 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 8.04 71.24 0.57 -2.76 16 2 C 0.01 0.19 5.87 -19.86 -0.12 0.07 16 3 C -0.15 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.06 -0.70 10.05 22.27 0.22 -0.47 16 5 C -0.15 -2.15 10.05 22.27 0.22 -1.93 16 6 C -0.04 -0.79 9.55 22.27 0.21 -0.57 16 7 C -0.69 -15.72 5.91 22.27 0.13 -15.59 16 8 S 2.70 76.03 5.19 -56.49 -0.29 75.73 16 9 O -0.99 -32.17 15.56 -128.00 -1.99 -34.16 16 10 O -0.98 -32.03 14.33 -128.00 -1.83 -33.86 16 11 N -0.99 -26.49 3.28 -513.07 -1.68 -28.17 16 12 C 0.11 3.01 4.54 86.36 0.39 3.40 16 13 C -0.12 -4.10 5.21 30.78 0.16 -3.94 16 14 C -0.07 -2.75 2.10 -10.66 -0.02 -2.77 16 15 C 0.03 1.56 4.45 29.85 0.13 1.70 16 16 C -0.53 -28.86 8.39 25.60 0.21 -28.64 16 17 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.94 -57.59 13.28 21.45 0.28 -57.30 16 20 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 C -0.13 -4.17 5.36 30.67 0.16 -4.00 16 25 C 0.12 3.22 6.48 86.36 0.56 3.78 16 26 H 0.11 1.53 6.11 -2.39 -0.01 1.52 16 27 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.09 1.96 3.42 -2.39 -0.01 1.95 16 29 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 31 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.14 2.71 7.33 -2.91 -0.02 2.69 16 33 H 0.10 1.99 7.14 -2.39 -0.02 1.98 16 34 H 0.10 2.47 4.97 -2.39 -0.01 2.46 16 35 H 0.08 2.79 6.93 -2.39 -0.02 2.78 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.10 2.30 6.92 -2.39 -0.02 2.29 16 44 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -74.24 351.09 1.03 -73.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.00 Total: 12.25 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 3.53 Total: -53.48 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.40 Total: -85.47 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -3.83 Total: -68.02 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 76.03 SS G_CDS: -0.29 Total: 75.73 kcal Total: -74.24 1.03 -73.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.867 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds