Wall clock time and date at job start Tue Mar 31 2020 14:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 120.00305 * 2 1 4 4 C 1.38235 * 120.00310 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99829 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.00019 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40198 * 203.53954 * 6 5 4 8 8 O 1.42096 * 106.39959 * 336.46020 * 6 5 4 9 9 N 1.65599 * 107.21658 * 90.00010 * 6 5 4 10 10 C 1.46928 * 120.62690 * 269.71744 * 9 6 5 11 11 C 1.52761 * 109.00989 * 233.58149 * 10 9 6 12 12 C 1.53041 * 109.38557 * 305.59701 * 11 10 9 13 13 C 1.53004 * 109.46090 * 181.25840 * 12 11 10 14 14 C 1.50703 * 109.46987 * 64.92568 * 13 12 11 15 15 H 1.07995 * 120.00396 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99624 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99905 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99911 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47160 * 89.99628 * 18 16 14 20 20 H 1.48498 * 109.47143 * 209.99583 * 18 16 14 21 21 H 1.48500 * 109.46904 * 330.00072 * 18 16 14 22 22 C 1.53031 * 109.54041 * 61.23405 * 12 11 10 23 23 C 1.46924 * 120.63450 * 89.99873 * 9 6 5 24 24 C 1.38238 * 119.99674 * 0.25365 * 5 4 3 25 25 C 1.38228 * 120.00121 * 359.49261 * 24 5 4 26 26 H 1.08998 * 109.47493 * 89.99693 * 1 2 3 27 27 H 1.08991 * 109.47127 * 210.00260 * 1 2 3 28 28 H 1.09005 * 109.46919 * 330.00319 * 1 2 3 29 29 H 1.08005 * 119.99920 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.00165 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.58979 * 353.42175 * 10 9 6 32 32 H 1.09003 * 109.58350 * 113.84525 * 10 9 6 33 33 H 1.08997 * 109.56663 * 185.55527 * 11 10 9 34 34 H 1.09006 * 109.35216 * 65.50350 * 11 10 9 35 35 H 1.09005 * 109.45586 * 301.21370 * 12 11 10 36 36 H 1.08999 * 109.47151 * 184.92652 * 13 12 11 37 37 H 1.09000 * 109.46933 * 304.92821 * 13 12 11 38 38 H 0.97004 * 119.99651 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.49816 * 178.68532 * 22 12 11 40 40 H 1.08997 * 109.52621 * 58.60660 * 22 12 11 41 41 H 1.08999 * 109.58888 * 246.15891 * 23 9 6 42 42 H 1.09004 * 109.58618 * 6.43647 * 23 9 6 43 43 H 1.08004 * 119.99572 * 179.72682 * 24 5 4 44 44 H 1.08004 * 120.00393 * 180.23620 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 16 6.0337 -0.0002 -0.0030 7 8 6.4345 -1.2497 -0.5483 8 8 6.4345 1.2498 -0.5471 9 7 6.5251 -0.0009 1.5784 10 6 6.7532 1.2631 2.2920 11 6 8.1572 1.2484 2.8938 12 6 8.3256 -0.0021 3.7599 13 6 9.7204 -0.0026 4.3887 14 6 9.8439 1.1614 5.3379 15 1 9.0109 1.8340 5.4789 16 6 11.0207 1.3676 6.0263 17 7 12.0350 0.5482 5.8549 18 14 11.1736 2.8101 7.2033 19 1 10.7432 2.3890 8.5608 20 1 12.5872 3.2627 7.2505 21 1 10.3121 3.9250 6.7345 22 6 8.1567 -1.2517 2.8929 23 6 6.7472 -1.2654 2.2928 24 6 3.5805 -1.1972 -0.0074 25 6 2.1982 -1.1972 -0.0016 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1324 -0.0010 31 1 6.6643 2.0970 1.5957 32 1 6.0179 1.3703 3.0895 33 1 8.3007 2.1379 3.5072 34 1 8.8943 1.2368 2.0908 35 1 7.5723 -0.0022 4.5478 36 1 9.8727 -0.9340 4.9342 37 1 10.4724 0.0865 3.6047 38 1 12.8627 0.6931 6.3396 39 1 8.2998 -2.1418 3.5057 40 1 8.8938 -1.2405 2.0900 41 1 6.0114 -1.3686 3.0904 42 1 6.6518 -2.0995 1.5976 43 1 4.1205 -2.1325 -0.0127 44 1 1.6581 -2.1324 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335385160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:50 Heat of formation + Delta-G solvation = -89.201496 kcal Electronic energy + Delta-G solvation = -25345.362688 eV Core-core repulsion = 21773.727147 eV Total energy + Delta-G solvation = -3571.635541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29185 -39.64685 -38.45439 -37.00514 -35.68904 -33.98919 -33.76510 -32.06591 -31.97775 -29.48951 -28.18881 -25.97165 -24.24939 -23.80582 -23.08185 -22.78562 -21.04226 -20.03420 -18.87934 -18.53661 -18.35535 -17.18801 -16.52578 -16.38983 -16.22985 -15.55020 -15.42285 -15.27117 -15.01619 -14.84681 -14.80043 -14.57982 -14.52885 -13.99721 -13.58472 -13.35318 -13.27982 -13.23166 -13.12281 -13.11052 -13.09787 -12.84801 -12.57612 -12.50064 -12.18076 -12.10895 -12.02101 -11.81928 -11.69192 -11.28670 -11.00241 -10.80818 -10.49887 -10.12315 -10.05131 -9.88979 -8.14548 -6.23747 -0.72539 -0.20820 0.30648 1.41999 1.43079 1.53709 1.88579 2.44117 2.49576 2.74806 3.17960 3.19264 3.72702 3.76089 3.86334 3.93540 4.07209 4.08095 4.27423 4.34897 4.35118 4.46449 4.53680 4.61590 4.66849 4.68574 4.80836 4.82600 4.89043 4.98934 5.00519 5.05478 5.09677 5.12557 5.24759 5.30630 5.37174 5.39522 5.44319 5.48276 5.60330 5.67847 5.86038 5.88253 5.93591 6.32187 6.93425 7.44735 8.97488 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.002919 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.150719 B = 9588.566201 C = 9988.632410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 C -0.148 4.148 4 C -0.032 4.032 5 C -0.687 4.687 6 S 2.699 3.301 7 O -0.985 6.985 8 O -0.987 6.987 9 N -0.995 5.995 10 C 0.123 3.877 11 C -0.116 4.116 12 C -0.071 4.071 13 C 0.030 3.970 14 C -0.526 4.526 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.260 1.260 22 C -0.127 4.127 23 C 0.123 3.877 24 C -0.031 4.031 25 C -0.147 4.147 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.068 0.932 36 H -0.011 1.011 37 H -0.018 1.018 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.625 -1.763 -11.381 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.033 4.033 3 C -0.167 4.167 4 C -0.051 4.051 5 C -0.777 4.777 6 S 2.794 3.206 7 O -0.975 6.975 8 O -0.977 6.977 9 N -0.834 5.834 10 C -0.002 4.002 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.579 5.579 18 Si 0.786 3.214 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.184 1.184 22 C -0.166 4.166 23 C -0.001 4.001 24 C -0.050 4.050 25 C -0.166 4.166 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.007 0.993 37 H 0.000 1.000 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.163 0.837 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.908 -1.789 -12.066 28.636 hybrid contribution 0.592 0.534 0.914 1.213 sum -25.316 -1.255 -11.152 27.692 Atomic orbital electron populations 1.21018 0.88237 1.04627 1.03948 1.20712 0.98225 0.92889 0.91523 1.21520 0.93527 0.99515 1.02096 1.21145 0.95795 0.96445 0.91720 1.30651 1.25488 1.00692 1.20853 1.01374 0.74560 0.72356 0.72290 1.93514 1.82277 1.44854 1.76886 1.93517 1.82292 1.44955 1.76970 1.57521 1.81874 1.13088 1.30871 1.21509 0.97272 0.84085 0.97302 1.21711 0.96037 0.99247 0.98496 1.21004 0.97620 0.94019 0.96326 1.19052 0.92470 0.95199 0.93973 1.21693 0.98774 1.12013 1.23890 0.91481 1.25984 0.95792 0.99341 0.99114 1.70119 1.04391 1.39491 1.43911 0.85512 0.77177 0.79614 0.79139 1.19907 1.21438 1.18414 1.21934 0.96774 0.98811 0.99048 1.21589 0.97030 0.84058 0.97462 1.21155 0.95773 0.96417 0.91658 1.21527 0.93541 0.99480 1.02027 0.89265 0.89771 0.89865 0.82679 0.83933 0.88676 0.89071 0.90780 0.94179 0.91373 0.99260 0.99994 0.93105 0.90401 0.93615 0.88879 0.88296 0.83697 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 71.24 0.71 -0.07 16 2 C -0.03 -0.44 5.88 -19.87 -0.12 -0.55 16 3 C -0.15 -2.21 9.70 22.27 0.22 -1.99 16 4 C -0.03 -0.62 9.52 22.27 0.21 -0.41 16 5 C -0.69 -15.23 5.97 22.27 0.13 -15.10 16 6 S 2.70 74.94 5.73 -56.49 -0.32 74.62 16 7 O -0.98 -31.52 15.87 -128.00 -2.03 -33.55 16 8 O -0.99 -32.40 15.86 -128.00 -2.03 -34.43 16 9 N -0.99 -26.80 3.30 -513.84 -1.69 -28.49 16 10 C 0.12 3.37 6.45 86.22 0.56 3.93 16 11 C -0.12 -4.20 5.17 30.53 0.16 -4.04 16 12 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 13 C 0.03 1.57 4.45 29.85 0.13 1.70 16 14 C -0.53 -29.12 8.39 25.60 0.21 -28.90 16 15 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 16 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 17 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 C -0.13 -4.21 5.36 30.67 0.16 -4.04 16 23 C 0.12 3.15 6.48 86.36 0.56 3.71 16 24 C -0.03 -0.58 9.52 22.27 0.21 -0.37 16 25 C -0.15 -2.13 9.70 22.27 0.22 -1.92 16 26 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.37 8.09 -2.39 -0.02 0.36 16 28 H 0.08 0.39 8.09 -2.38 -0.02 0.37 16 29 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.14 2.59 7.62 -2.91 -0.02 2.57 16 31 H 0.10 2.44 6.91 -2.39 -0.02 2.43 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.81 6.91 -2.39 -0.02 2.80 16 34 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.10 2.29 6.92 -2.38 -0.02 2.27 16 43 H 0.15 2.48 7.61 -2.91 -0.02 2.46 16 44 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -74.71 365.97 1.02 -73.69 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.98 Total: 10.14 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.81 Total: -50.69 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.41 Total: -85.97 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -4.06 Total: -67.98 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 74.94 SS G_CDS: -0.32 Total: 74.62 kcal Total: -74.71 1.02 -73.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.514 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds