Wall clock time and date at job start Tue Mar 31 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 S 1.76202 * 120.00260 * 179.97438 * 5 4 3 7 7 O 1.42092 * 106.40268 * 203.53737 * 6 5 4 8 8 O 1.42104 * 106.40064 * 336.45410 * 6 5 4 9 9 N 1.65595 * 107.21980 * 89.99631 * 6 5 4 10 10 C 1.46934 * 120.63172 * 269.72027 * 9 6 5 11 11 C 1.53623 * 108.53976 * 126.36789 * 10 9 6 12 12 C 1.53031 * 109.24356 * 54.85938 * 11 10 9 13 13 C 1.50699 * 109.45134 * 178.49173 * 12 11 10 14 14 H 1.08004 * 119.99995 * 120.05986 * 13 12 11 15 15 C 1.37879 * 120.00257 * 300.06145 * 13 12 11 16 16 N 1.31520 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46860 * 90.00324 * 17 15 13 19 19 H 1.48498 * 109.47482 * 210.00260 * 17 15 13 20 20 H 1.48500 * 109.47148 * 330.00562 * 17 15 13 21 21 C 1.53041 * 109.54152 * 298.50608 * 12 11 10 22 22 C 1.46924 * 120.63138 * 90.00052 * 9 6 5 23 23 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 24 24 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 25 25 C 1.50699 * 120.00214 * 0.06609 * 24 2 1 26 26 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 27 27 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 28 28 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 29 29 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 31 31 H 1.08995 * 109.58338 * 246.19938 * 10 9 6 32 32 H 1.09003 * 109.58133 * 6.62734 * 10 9 6 33 33 H 1.08996 * 109.63492 * 294.86363 * 11 10 9 34 34 H 1.09010 * 109.45228 * 174.74195 * 11 10 9 35 35 H 1.09002 * 109.46399 * 58.52712 * 12 11 10 36 36 H 0.96996 * 119.99815 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.49814 * 301.41679 * 21 12 11 38 38 H 1.09000 * 109.52598 * 181.33009 * 21 12 11 39 39 H 1.08999 * 109.58763 * 353.37521 * 22 9 6 40 40 H 1.09007 * 109.58888 * 113.65608 * 22 9 6 41 41 H 1.08002 * 119.99734 * 179.97438 * 23 5 4 42 42 H 1.09008 * 109.46685 * 270.16872 * 25 24 2 43 43 H 1.09003 * 109.47192 * 30.16258 * 25 24 2 44 44 H 1.08994 * 109.47503 * 150.16720 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 16 6.0337 0.0002 0.0125 7 8 6.4371 -1.2482 -0.5332 8 8 6.4370 1.2512 -0.5276 9 7 6.5178 -0.0034 1.5961 10 6 6.7425 1.2593 2.3131 11 6 5.9109 1.2423 3.6047 12 6 6.2598 -0.0095 4.4128 13 6 5.4737 -0.0121 5.6985 14 1 4.7932 -0.8227 5.9137 15 6 5.6231 1.0203 6.6000 16 7 6.4514 2.0076 6.3377 17 14 4.6482 1.0174 8.1934 18 1 5.4242 0.3154 9.2472 19 1 4.3898 2.4167 8.6182 20 1 3.3556 0.3177 7.9816 21 6 5.9105 -1.2578 3.5992 22 6 6.7367 -1.2692 2.3091 23 6 3.5806 -1.1968 0.0003 24 6 2.1981 -1.1969 -0.0045 25 6 1.4447 -2.5020 -0.0110 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1328 0.0101 31 1 7.8002 1.3574 2.5575 32 1 6.4308 2.0954 1.6871 33 1 4.8496 1.2313 3.3568 34 1 6.1376 2.1308 4.1942 35 1 7.3260 -0.0103 4.6391 36 1 6.5563 2.7341 6.9718 37 1 4.8492 -1.2454 3.3513 38 1 6.1371 -2.1492 4.1842 39 1 6.4213 -2.1019 1.6805 40 1 7.7944 -1.3742 2.5510 41 1 4.1207 -2.1321 -0.0002 42 1 1.2595 -2.8196 1.0152 43 1 0.4941 -2.3702 -0.5278 44 1 2.0356 -3.2601 -0.5249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335802353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:35 Heat of formation + Delta-G solvation = -65.762528 kcal Electronic energy + Delta-G solvation = -26281.388967 eV Core-core repulsion = 22710.769816 eV Total energy + Delta-G solvation = -3570.619151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62023 -37.71156 -37.05059 -35.61845 -33.61605 -33.42863 -32.30746 -30.86520 -30.06089 -27.89849 -26.69745 -25.75060 -22.58945 -22.35589 -22.29773 -21.43995 -19.44367 -18.33455 -17.59077 -17.08855 -16.24237 -16.14350 -15.38709 -15.19823 -14.58479 -14.44221 -14.26780 -13.97107 -13.44151 -13.27931 -13.15800 -13.02473 -12.83701 -12.75414 -12.74253 -12.30720 -12.18298 -12.08803 -11.92871 -11.91397 -11.83479 -11.36899 -11.15217 -10.98075 -10.90490 -10.68603 -10.53148 -10.38006 -10.06734 -9.59920 -9.26214 -9.07320 -8.97170 -8.78117 -8.40898 -8.24988 -6.02305 -4.08457 0.58854 0.89949 1.28625 3.14742 3.27077 3.34429 3.37045 3.52066 4.01499 4.40333 4.42217 4.62724 4.71219 4.80565 5.09389 5.14339 5.19005 5.26508 5.27546 5.33774 5.46925 5.53273 5.58802 5.67692 5.74318 5.89219 5.92436 5.99278 6.09087 6.10788 6.15814 6.18703 6.33313 6.41878 6.43465 6.45062 6.72576 6.84918 6.91139 7.07534 7.18947 7.41623 7.70050 7.94895 8.06998 8.41341 8.95057 9.56408 11.03075 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.004882 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.849076 B = 5734.495689 C = 6960.007481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.139 4.139 4 C -0.018 4.018 5 C -0.672 4.672 6 S 2.690 3.310 7 O -0.967 6.967 8 O -0.963 6.963 9 N -0.988 5.988 10 C 0.118 3.882 11 C -0.123 4.123 12 C 0.051 3.949 13 C -0.511 4.511 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.124 4.124 22 C 0.122 3.878 23 C -0.015 4.015 24 C -0.111 4.111 25 C -0.116 4.116 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -4.300 -12.827 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.157 4.157 4 C -0.037 4.037 5 C -0.758 4.758 6 S 2.780 3.220 7 O -0.957 6.957 8 O -0.954 6.954 9 N -0.827 5.827 10 C -0.006 4.006 11 C -0.162 4.162 12 C 0.032 3.968 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.163 4.163 22 C -0.003 4.003 23 C -0.035 4.035 24 C -0.112 4.112 25 C -0.172 4.172 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.972 -4.129 -13.477 16.194 hybrid contribution -1.278 0.174 1.339 1.860 sum -9.250 -3.955 -12.138 15.765 Atomic orbital electron populations 1.20939 0.90911 1.03473 1.02584 1.20050 0.96178 0.92819 0.94637 1.21123 0.94195 0.97771 1.02639 1.20869 0.94645 0.96606 0.91601 1.31101 1.27775 0.99324 1.17579 1.01944 0.73829 0.73293 0.72911 1.93533 1.81169 1.44160 1.76836 1.93546 1.81095 1.43823 1.76915 1.57576 1.81414 1.13553 1.30199 1.21831 1.01341 0.82255 0.95188 1.22086 0.96778 1.04318 0.93045 1.18581 0.97053 0.88869 0.92257 1.21202 1.24478 1.06774 1.02500 0.92836 1.24953 0.95306 0.95625 0.98062 1.69841 1.36496 1.10693 1.35909 0.86651 0.80462 0.77145 0.84039 1.20733 1.21289 1.20096 1.22012 0.98583 1.01109 0.94573 1.21540 1.00920 0.83119 0.94679 1.20742 0.93899 0.96583 0.92242 1.19845 0.93687 0.95242 1.02389 1.20834 0.99897 0.93755 1.02737 0.90668 0.90817 0.91013 0.85229 0.84413 0.91396 0.90976 0.94328 0.87899 0.95365 0.92989 0.93011 0.92207 0.90806 0.91328 0.84548 0.90776 0.91287 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.19 36.00 0.33 -0.71 16 2 C -0.04 -0.43 5.88 -104.63 -0.62 -1.05 16 3 C -0.14 -1.75 9.70 -39.58 -0.38 -2.13 16 4 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 5 C -0.67 -10.32 5.97 -39.58 -0.24 -10.56 16 6 S 2.69 44.97 5.69 -107.50 -0.61 44.36 16 7 O -0.97 -17.31 16.00 -57.17 -0.91 -18.23 16 8 O -0.96 -17.75 15.99 -57.17 -0.91 -18.66 16 9 N -0.99 -17.14 3.28 -113.26 -0.37 -17.51 16 10 C 0.12 2.19 6.41 -3.48 -0.02 2.17 16 11 C -0.12 -2.70 5.17 -26.39 -0.14 -2.83 16 12 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 13 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 14 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.34 11.30 55.43 0.63 -23.72 16 17 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 22 C 0.12 2.06 6.37 -3.71 -0.02 2.04 16 23 C -0.02 -0.22 9.18 -39.58 -0.36 -0.58 16 24 C -0.11 -1.38 5.88 -104.63 -0.62 -2.00 16 25 C -0.12 -1.07 9.19 36.01 0.33 -0.74 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.14 1.86 7.62 -52.49 -0.40 1.46 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.23 7.12 -51.93 -0.37 0.86 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 2.53 6.03 -51.92 -0.31 2.22 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.10 7.13 -51.93 -0.37 0.73 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.52 6.72 -51.93 -0.35 0.17 16 44 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -30.87 361.17 -11.33 -42.21 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.74 Total: 1.14 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.83 Total: -30.71 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.25 Total: -41.23 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.83 Total: -36.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 44.97 SS G_CDS: -0.61 Total: 44.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.87 -11.33 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335802353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.557 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds