Wall clock time and date at job start Tue Mar 31 2020 14:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 S 1.76202 * 120.00260 * 179.97438 * 5 4 3 7 7 O 1.42092 * 106.40268 * 203.53737 * 6 5 4 8 8 O 1.42104 * 106.40064 * 336.45410 * 6 5 4 9 9 N 1.65595 * 107.21980 * 89.99631 * 6 5 4 10 10 C 1.46934 * 120.63172 * 269.72027 * 9 6 5 11 11 C 1.53623 * 108.53976 * 126.36789 * 10 9 6 12 12 C 1.53031 * 109.24356 * 54.85938 * 11 10 9 13 13 C 1.50699 * 109.45134 * 178.49173 * 12 11 10 14 14 H 1.08004 * 119.99995 * 120.05986 * 13 12 11 15 15 C 1.37879 * 120.00257 * 300.06145 * 13 12 11 16 16 N 1.31520 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46860 * 90.00324 * 17 15 13 19 19 H 1.48498 * 109.47482 * 210.00260 * 17 15 13 20 20 H 1.48500 * 109.47148 * 330.00562 * 17 15 13 21 21 C 1.53041 * 109.54152 * 298.50608 * 12 11 10 22 22 C 1.46924 * 120.63138 * 90.00052 * 9 6 5 23 23 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 24 24 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 25 25 C 1.50699 * 120.00214 * 0.06609 * 24 2 1 26 26 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 27 27 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 28 28 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 29 29 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 31 31 H 1.08995 * 109.58338 * 246.19938 * 10 9 6 32 32 H 1.09003 * 109.58133 * 6.62734 * 10 9 6 33 33 H 1.08996 * 109.63492 * 294.86363 * 11 10 9 34 34 H 1.09010 * 109.45228 * 174.74195 * 11 10 9 35 35 H 1.09002 * 109.46399 * 58.52712 * 12 11 10 36 36 H 0.96996 * 119.99815 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.49814 * 301.41679 * 21 12 11 38 38 H 1.09000 * 109.52598 * 181.33009 * 21 12 11 39 39 H 1.08999 * 109.58763 * 353.37521 * 22 9 6 40 40 H 1.09007 * 109.58888 * 113.65608 * 22 9 6 41 41 H 1.08002 * 119.99734 * 179.97438 * 23 5 4 42 42 H 1.09008 * 109.46685 * 270.16872 * 25 24 2 43 43 H 1.09003 * 109.47192 * 30.16258 * 25 24 2 44 44 H 1.08994 * 109.47503 * 150.16720 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 16 6.0337 0.0002 0.0125 7 8 6.4371 -1.2482 -0.5332 8 8 6.4370 1.2512 -0.5276 9 7 6.5178 -0.0034 1.5961 10 6 6.7425 1.2593 2.3131 11 6 5.9109 1.2423 3.6047 12 6 6.2598 -0.0095 4.4128 13 6 5.4737 -0.0121 5.6985 14 1 4.7932 -0.8227 5.9137 15 6 5.6231 1.0203 6.6000 16 7 6.4514 2.0076 6.3377 17 14 4.6482 1.0174 8.1934 18 1 5.4242 0.3154 9.2472 19 1 4.3898 2.4167 8.6182 20 1 3.3556 0.3177 7.9816 21 6 5.9105 -1.2578 3.5992 22 6 6.7367 -1.2692 2.3091 23 6 3.5806 -1.1968 0.0003 24 6 2.1981 -1.1969 -0.0045 25 6 1.4447 -2.5020 -0.0110 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1328 0.0101 31 1 7.8002 1.3574 2.5575 32 1 6.4308 2.0954 1.6871 33 1 4.8496 1.2313 3.3568 34 1 6.1376 2.1308 4.1942 35 1 7.3260 -0.0103 4.6391 36 1 6.5563 2.7341 6.9718 37 1 4.8492 -1.2454 3.3513 38 1 6.1371 -2.1492 4.1842 39 1 6.4213 -2.1019 1.6805 40 1 7.7944 -1.3742 2.5510 41 1 4.1207 -2.1321 -0.0002 42 1 1.2595 -2.8196 1.0152 43 1 0.4941 -2.3702 -0.5278 44 1 2.0356 -3.2601 -0.5249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335802353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:35 Heat of formation + Delta-G solvation = -83.256839 kcal Electronic energy + Delta-G solvation = -26282.147577 eV Core-core repulsion = 22710.769816 eV Total energy + Delta-G solvation = -3571.377761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57062 -39.29564 -38.43650 -37.01022 -35.27775 -34.52974 -33.20734 -32.62560 -31.67103 -28.72773 -27.62816 -27.54254 -24.19558 -23.95552 -23.31087 -22.47820 -21.01978 -19.74153 -18.90111 -18.50366 -18.07756 -17.31192 -16.53538 -16.39466 -16.36441 -15.40771 -15.29439 -15.24615 -14.95771 -14.87823 -14.46432 -14.39771 -14.19484 -13.72733 -13.64912 -13.54215 -13.45719 -13.24134 -13.15082 -13.07672 -12.93608 -12.81940 -12.74921 -12.57806 -12.41248 -12.07064 -12.05316 -11.88148 -11.69536 -11.40268 -10.95619 -10.79029 -10.37481 -10.07642 -9.84059 -9.73054 -8.04506 -6.17517 -0.67991 -0.18343 0.29005 1.41580 1.43665 1.52039 1.87859 2.44421 2.45495 2.74228 3.19448 3.22301 3.72581 3.77690 3.82606 3.89141 4.20656 4.24528 4.30622 4.40403 4.44741 4.51943 4.64452 4.66674 4.74280 4.74750 4.80029 4.81354 4.83206 4.89024 4.95397 5.07410 5.12883 5.17750 5.18356 5.29088 5.32002 5.35744 5.50614 5.56972 5.65040 5.72915 5.91299 6.05441 6.19900 6.43459 6.93676 7.50090 8.98903 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.004882 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.849076 B = 5734.495689 C = 6960.007481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.146 4.146 4 C -0.040 4.040 5 C -0.685 4.685 6 S 2.703 3.297 7 O -0.979 6.979 8 O -0.985 6.985 9 N -0.990 5.990 10 C 0.126 3.874 11 C -0.112 4.112 12 C 0.046 3.954 13 C -0.529 4.529 14 H 0.050 0.950 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.115 4.115 22 C 0.123 3.877 23 C -0.033 4.033 24 C -0.117 4.117 25 C -0.116 4.116 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.001 0.999 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 -5.268 -13.437 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 C -0.164 4.164 4 C -0.059 4.059 5 C -0.774 4.774 6 S 2.797 3.203 7 O -0.970 6.970 8 O -0.975 6.975 9 N -0.829 5.829 10 C 0.002 3.998 11 C -0.152 4.152 12 C 0.027 3.973 13 C -0.567 4.567 14 H 0.068 0.932 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.773 3.227 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.154 4.154 22 C -0.002 4.002 23 C -0.053 4.053 24 C -0.118 4.118 25 C -0.172 4.172 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.171 0.829 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.119 -5.111 -14.089 18.083 hybrid contribution -0.684 0.462 1.510 1.721 sum -10.803 -4.649 -12.579 17.221 Atomic orbital electron populations 1.21037 0.88179 1.04520 1.04063 1.20543 0.98223 0.92270 0.92790 1.21483 0.93600 0.99392 1.01948 1.21065 0.95843 0.96397 0.92607 1.30762 1.26277 1.00428 1.19964 1.01328 0.74265 0.72483 0.72192 1.93505 1.82030 1.44541 1.76926 1.93510 1.82083 1.44692 1.77229 1.57538 1.81972 1.13119 1.30270 1.21626 1.00664 0.83526 0.94033 1.21847 0.96834 1.02416 0.94093 1.18573 0.94983 0.91397 0.92339 1.21567 1.24621 1.06611 1.03906 0.93216 1.25646 0.96260 0.95457 1.00937 1.69974 1.37573 1.11101 1.36740 0.85740 0.79303 0.77073 0.80594 1.20389 1.21121 1.19599 1.21864 0.98882 0.99331 0.95291 1.21589 1.01015 0.83702 0.93905 1.20990 0.95067 0.96364 0.92856 1.20272 0.93262 0.97026 1.01282 1.20921 1.00591 0.92203 1.03485 0.88760 0.89659 0.90150 0.82867 0.84401 0.91411 0.89618 0.94958 0.90798 0.98052 0.93103 0.93146 0.91505 0.88386 0.90600 0.83910 0.90236 0.89169 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.19 71.24 0.65 -0.97 16 2 C -0.04 -0.81 5.88 -19.87 -0.12 -0.92 16 3 C -0.15 -3.43 9.70 22.27 0.22 -3.21 16 4 C -0.04 -1.13 9.52 22.27 0.21 -0.91 16 5 C -0.69 -20.69 5.97 22.27 0.13 -20.55 16 6 S 2.70 89.51 5.69 -56.49 -0.32 89.19 16 7 O -0.98 -34.37 16.00 -128.00 -2.05 -36.41 16 8 O -0.98 -36.31 15.99 -128.00 -2.05 -38.36 16 9 N -0.99 -34.10 3.28 -512.26 -1.68 -35.78 16 10 C 0.13 4.75 6.41 86.51 0.55 5.30 16 11 C -0.11 -5.05 5.17 30.81 0.16 -4.89 16 12 C 0.05 2.17 2.06 -11.52 -0.02 2.14 16 13 C -0.53 -28.04 8.56 25.60 0.22 -27.82 16 14 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 15 C 0.02 0.84 5.30 84.65 0.45 1.29 16 16 N -0.91 -51.01 11.30 21.45 0.24 -50.77 16 17 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C -0.11 -4.40 5.30 30.67 0.16 -4.24 16 22 C 0.12 4.04 6.37 86.36 0.55 4.59 16 23 C -0.03 -0.91 9.18 22.27 0.20 -0.70 16 24 C -0.12 -2.67 5.88 -19.87 -0.12 -2.79 16 25 C -0.12 -1.80 9.19 71.24 0.65 -1.14 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.96 6.72 -2.39 -0.02 0.95 16 28 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 29 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.14 3.74 7.62 -2.91 -0.02 3.72 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 2.97 7.12 -2.39 -0.02 2.95 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 3.77 6.03 -2.38 -0.01 3.75 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.10 2.77 7.13 -2.39 -0.02 2.76 16 40 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.14 3.53 7.62 -2.91 -0.02 3.51 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.09 1.01 6.72 -2.39 -0.02 1.00 16 44 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 Total: -1.00 -66.37 361.17 1.07 -65.30 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.99 Total: 17.04 kcal Atomic # 6 Polarization: -58.75 SS G_CDS: 3.91 Total: -54.84 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.44 Total: -86.55 kcal Atomic # 8 Polarization: -70.68 SS G_CDS: -4.09 Total: -74.77 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 89.51 SS G_CDS: -0.32 Total: 89.19 kcal Total: -66.37 1.07 -65.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335802353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.958 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds