Wall clock time and date at job start Tue Mar 31 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 N 1.65603 * 104.45019 * 180.02562 * 7 6 5 11 11 C 1.46927 * 120.62574 * 269.71850 * 10 7 6 12 12 C 1.53624 * 108.53836 * 126.37239 * 11 10 7 13 13 C 1.53035 * 109.24578 * 54.85546 * 12 11 10 14 14 C 1.50702 * 109.45144 * 178.49855 * 13 12 11 15 15 H 1.08006 * 119.99969 * 120.05717 * 14 13 12 16 16 C 1.37875 * 119.99758 * 300.05790 * 14 13 12 17 17 N 1.31509 * 119.99985 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46957 * 60.00236 * 18 16 14 20 20 H 1.48501 * 109.47101 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47039 * 300.00076 * 18 16 14 22 22 C 1.53041 * 109.53531 * 298.51129 * 13 12 11 23 23 C 1.46925 * 120.63209 * 90.00031 * 10 7 6 24 24 C 1.38239 * 119.99756 * 359.45918 * 5 4 3 25 25 C 1.38234 * 119.99992 * 0.53603 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 32 32 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 33 33 H 1.09003 * 109.58605 * 246.20103 * 11 10 7 34 34 H 1.08993 * 109.59058 * 6.63081 * 11 10 7 35 35 H 1.08999 * 109.63349 * 294.86064 * 12 11 10 36 36 H 1.09007 * 109.43296 * 174.72244 * 12 11 10 37 37 H 1.08995 * 109.46684 * 58.52813 * 13 12 11 38 38 H 0.97002 * 119.99978 * 179.97438 * 17 16 14 39 39 H 1.09007 * 109.49807 * 301.41043 * 22 13 12 40 40 H 1.09007 * 109.50018 * 181.32058 * 22 13 12 41 41 H 1.09005 * 109.58504 * 353.37533 * 23 10 7 42 42 H 1.09001 * 109.58391 * 113.65213 * 23 10 7 43 43 H 1.08000 * 119.99962 * 180.30225 * 24 5 4 44 44 H 1.08002 * 120.00264 * 179.76377 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 7 8.0390 -0.0023 1.5466 11 6 8.7854 -1.2662 1.4818 12 6 9.6662 -1.2493 0.2233 13 6 10.5485 0.0010 0.2418 14 6 11.4410 0.0034 -0.9725 15 1 11.3840 0.8149 -1.6830 16 6 12.3302 -1.0303 -1.1765 17 7 12.3999 -2.0181 -0.3111 18 14 13.4361 -1.0277 -2.6821 19 1 14.2933 0.1848 -2.6644 20 1 14.2929 -2.2405 -2.6690 21 1 12.6007 -1.0255 -3.9098 22 6 9.6653 1.2507 0.2279 23 6 8.7840 1.2624 1.4808 24 6 3.5805 -1.1972 0.0014 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1400 -0.8891 -0.5270 32 1 6.1401 0.8909 -0.5236 33 1 9.4118 -1.3664 2.3683 34 1 8.0866 -2.1010 1.4293 35 1 9.0351 -1.2362 -0.6653 36 1 10.2962 -2.1389 0.2096 37 1 11.1615 -0.0003 1.1430 38 1 13.0253 -2.7456 -0.4548 39 1 9.0341 1.2404 -0.6608 40 1 10.2944 2.1409 0.2174 41 1 8.0841 2.0964 1.4276 42 1 9.4082 1.3653 2.3684 43 1 4.1205 -2.1325 0.0024 44 1 1.6582 -2.1325 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335814102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:38 Heat of formation + Delta-G solvation = -80.032437 kcal Electronic energy + Delta-G solvation = -25515.996833 eV Core-core repulsion = 21944.758892 eV Total energy + Delta-G solvation = -3571.237941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44068 -39.29054 -38.28499 -37.06787 -35.26622 -35.01041 -32.60767 -31.94028 -31.65523 -30.52884 -27.61424 -26.17185 -24.14193 -23.91892 -23.75208 -21.99421 -20.98013 -19.77563 -18.88063 -18.17806 -17.79107 -17.25940 -16.78907 -16.50541 -16.39497 -16.05338 -15.44502 -15.01689 -14.85887 -14.64080 -14.47238 -14.41665 -14.35737 -14.02026 -13.85040 -13.66845 -13.46603 -13.25784 -13.25129 -12.91026 -12.88684 -12.77320 -12.56454 -12.43832 -12.27446 -12.07802 -11.93692 -11.92290 -11.84330 -11.38380 -10.95516 -10.77813 -10.36319 -9.95292 -9.88251 -9.44279 -8.03818 -6.17380 -0.90805 0.31811 0.38441 1.44313 1.45112 1.51993 1.61550 2.46171 2.65653 2.82771 3.05942 3.22808 3.35815 3.71451 3.78007 4.01708 4.04297 4.05571 4.29910 4.41167 4.45482 4.48944 4.50393 4.55024 4.65405 4.74796 4.80496 4.83807 4.85311 4.89807 4.95779 5.09382 5.14204 5.24557 5.33606 5.37693 5.37796 5.46371 5.57622 5.61282 5.66088 5.73541 5.99569 6.05502 6.22218 6.43449 6.94788 7.50688 8.99273 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.003134 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.207676 B = 8932.247819 C = 9332.392300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.568 4.568 7 S 2.609 3.391 8 O -0.979 6.979 9 O -0.985 6.985 10 N -0.996 5.996 11 C 0.126 3.874 12 C -0.117 4.117 13 C 0.044 3.956 14 C -0.530 4.530 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.272 1.272 22 C -0.117 4.117 23 C 0.122 3.878 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.072 0.928 37 H -0.005 1.005 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.135 0.865 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.396 4.376 -0.762 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.698 4.698 7 S 2.708 3.292 8 O -0.970 6.970 9 O -0.975 6.975 10 N -0.833 5.833 11 C 0.001 3.999 12 C -0.156 4.156 13 C 0.026 3.974 14 C -0.568 4.568 15 H 0.072 0.928 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.156 4.156 23 C -0.003 4.003 24 C -0.140 4.140 25 C -0.146 4.146 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.013 0.987 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.715 4.212 0.133 22.120 hybrid contribution 1.516 -0.355 -1.371 2.074 sum -20.199 3.857 -1.238 20.601 Atomic orbital electron populations 1.20885 0.88663 1.04028 1.03491 1.20469 0.98072 0.92842 0.97193 1.21406 0.93513 0.99190 1.00380 1.21461 0.95589 0.97702 0.98860 1.19160 0.91683 0.95157 1.06077 1.29539 1.01510 1.14430 1.24281 1.05013 0.72603 0.73227 0.78400 1.93513 1.83825 1.45932 1.73694 1.93516 1.83858 1.46109 1.74025 1.57603 1.23527 1.12731 1.89453 1.21578 0.95150 0.83825 0.99322 1.21910 0.96842 1.02334 0.94522 1.18582 0.92345 0.91649 0.94870 1.21577 1.20020 1.06535 1.08678 0.92828 1.25675 0.98445 0.95525 0.98822 1.69974 1.37498 1.11053 1.36991 0.85777 0.79046 0.77184 0.80582 1.20004 1.21412 1.19726 1.21915 0.97861 0.99154 0.96712 1.21548 0.95687 0.84056 0.98993 1.21452 0.95663 0.97760 0.99078 1.21389 0.93458 0.99248 1.00511 0.89793 0.90444 0.90284 0.83129 0.84175 0.82765 0.82105 0.92480 0.89429 0.93805 0.90938 0.98676 0.93133 0.91917 0.91619 0.88117 0.91700 0.84723 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 2 C -0.09 -1.48 5.88 -19.86 -0.12 -1.59 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 4 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 5 C -0.12 -2.88 5.14 -19.87 -0.10 -2.98 16 6 C -0.57 -13.52 6.30 71.23 0.45 -13.07 16 7 S 2.61 80.90 5.40 -56.49 -0.30 80.59 16 8 O -0.98 -33.74 16.72 -127.65 -2.13 -35.88 16 9 O -0.98 -35.75 16.72 -127.65 -2.13 -37.88 16 10 N -1.00 -33.14 3.21 -512.30 -1.65 -34.79 16 11 C 0.13 4.68 6.34 86.51 0.55 5.23 16 12 C -0.12 -5.07 5.17 30.82 0.16 -4.91 16 13 C 0.04 2.06 2.06 -11.51 -0.02 2.03 16 14 C -0.53 -27.59 8.56 25.60 0.22 -27.38 16 15 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 16 C 0.01 0.74 5.30 84.66 0.45 1.19 16 17 N -0.92 -50.97 11.31 21.45 0.24 -50.73 16 18 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 23 C 0.12 3.94 6.31 86.36 0.55 4.49 16 24 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 25 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 29 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.15 3.32 8.09 -2.39 -0.02 3.30 16 32 H 0.16 3.16 8.09 -2.39 -0.02 3.14 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.96 7.09 -2.39 -0.02 2.94 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.07 3.63 6.03 -2.38 -0.01 3.62 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.10 2.74 7.10 -2.38 -0.02 2.73 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -67.48 367.25 0.89 -66.59 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.97 Total: 18.71 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 3.87 Total: -50.89 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.40 Total: -85.52 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -4.27 Total: -73.76 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 80.90 SS G_CDS: -0.30 Total: 80.59 kcal Total: -67.48 0.89 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335814102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.440 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds