Wall clock time and date at job start Tue Mar 31 2020 13:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86805 * 119.99580 * 2 1 4 4 H 1.48507 * 109.47189 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47066 * 30.00185 * 3 2 1 6 6 H 1.48504 * 109.46563 * 150.00251 * 3 2 1 7 7 C 1.40221 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00076 * 196.38387 * 7 2 1 9 9 C 1.41108 * 119.99855 * 16.38306 * 7 2 1 10 10 C 1.40896 * 120.10154 * 204.21227 * 9 7 2 11 11 C 1.36317 * 119.88767 * 179.97438 * 10 9 7 12 12 C 1.40006 * 120.11084 * 359.97438 * 11 10 9 13 13 C 1.47648 * 119.89760 * 180.02562 * 12 11 10 14 14 O 1.21585 * 120.00256 * 317.24802 * 13 12 11 15 15 N 1.34773 * 119.99917 * 137.24446 * 13 12 11 16 16 C 1.47306 * 121.32603 * 4.51671 * 15 13 12 17 17 C 1.53080 * 107.97520 * 117.58728 * 16 15 13 18 18 C 1.50002 * 110.40745 * 45.72654 * 17 16 15 19 19 C 1.31552 * 124.31840 * 341.03841 * 18 17 16 20 20 C 1.47078 * 118.30566 * 180.78401 * 19 18 17 21 21 C 1.36224 * 125.95649 * 65.00589 * 20 19 18 22 22 C 1.40830 * 106.72246 * 179.97438 * 21 20 19 23 23 C 1.34800 * 107.06646 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.71610 * 359.73694 * 23 22 21 25 25 C 1.46987 * 121.32757 * 184.23362 * 15 13 12 26 26 C 1.40014 * 120.21208 * 0.04726 * 12 11 10 27 27 C 1.36323 * 120.10268 * 359.94756 * 26 12 11 28 28 H 0.96994 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.05106 * 359.70586 * 10 9 7 30 30 H 1.07996 * 119.94267 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.75804 * 237.20102 * 16 15 13 32 32 H 1.08993 * 109.76357 * 357.91446 * 16 15 13 33 33 H 1.08990 * 109.31704 * 166.01872 * 17 16 15 34 34 H 1.09002 * 109.31356 * 285.44511 * 17 16 15 35 35 H 1.07996 * 117.83448 * 161.01969 * 18 17 16 36 36 H 1.08001 * 126.63965 * 359.97424 * 21 20 19 37 37 H 1.08000 * 126.46569 * 179.97438 * 22 21 20 38 38 H 1.07994 * 125.64046 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.52159 * 343.25378 * 25 15 13 40 40 H 1.09003 * 109.52439 * 103.44508 * 25 15 13 41 41 H 1.07997 * 119.95290 * 179.97438 * 26 12 11 42 42 H 1.07998 * 120.05512 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0466 -1.4001 5 1 1.4378 2.6527 0.7001 6 1 3.5380 1.4402 0.7000 7 6 2.0077 -1.2143 -0.0005 8 1 3.0547 -1.2334 0.2633 9 6 1.3451 -2.4114 -0.3458 10 6 1.8344 -3.6488 0.1175 11 6 1.1906 -4.8025 -0.2183 12 6 0.0447 -4.7592 -1.0215 13 6 -0.6492 -6.0117 -1.3818 14 8 -0.0065 -6.9897 -1.7114 15 7 -1.9952 -6.0708 -1.3453 16 6 -2.8063 -4.8782 -1.0460 17 6 -3.6754 -4.5787 -2.2701 18 6 -4.3122 -5.8374 -2.7802 19 6 -3.8890 -7.0503 -2.4964 20 6 -4.6039 -8.1936 -3.0839 21 6 -4.6764 -8.4956 -4.4102 22 6 -5.4552 -9.6641 -4.5177 23 6 -5.8159 -10.0155 -3.2673 24 8 -5.2951 -9.1289 -2.4033 25 6 -2.7124 -7.3265 -1.6085 26 6 -0.4451 -3.5320 -1.4846 27 6 0.1918 -2.3730 -1.1541 28 1 -0.4850 0.8400 0.0004 29 1 2.7205 -3.6834 0.7338 30 1 1.5652 -5.7515 0.1360 31 1 -3.4415 -5.0720 -0.1817 32 1 -2.1531 -4.0303 -0.8405 33 1 -4.4536 -3.8671 -1.9944 34 1 -3.0557 -4.1447 -3.0548 35 1 -5.1751 -5.7416 -3.4224 36 1 -4.2243 -7.9455 -5.2222 37 1 -5.7145 -10.1810 -5.4298 38 1 -6.4196 -10.8712 -3.0035 39 1 -2.0428 -8.0322 -2.1004 40 1 -3.0622 -7.7505 -0.6672 41 1 -1.3291 -3.5036 -2.1043 42 1 -0.1864 -1.4269 -1.5121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335948010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:11 Heat of formation + Delta-G solvation = 24.917017 kcal Electronic energy + Delta-G solvation = -26031.907631 eV Core-core repulsion = 22329.776689 eV Total energy + Delta-G solvation = -3702.130942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59618 -39.85713 -37.59031 -36.80338 -34.03010 -33.55298 -32.82819 -31.63991 -30.28048 -29.53520 -28.36088 -26.45731 -25.03428 -23.73252 -22.04593 -21.64150 -21.17487 -21.07152 -19.44406 -18.00838 -17.57007 -17.31885 -16.46461 -16.14698 -15.89358 -15.45123 -15.06065 -14.69175 -14.32426 -13.97604 -13.66134 -13.54295 -13.31349 -12.99929 -12.89505 -12.84396 -12.75391 -12.34565 -12.07879 -12.02174 -11.78200 -11.60932 -11.26840 -11.25441 -11.00109 -10.86809 -10.56039 -10.08372 -10.07217 -9.57552 -9.35036 -9.27729 -9.00099 -8.46496 -8.25913 -7.68997 -7.55210 -7.01350 -4.60304 1.35132 1.90372 2.29144 2.48978 2.91503 2.95494 2.96942 2.98209 2.98359 3.45394 3.66434 3.75159 4.45442 4.48616 4.73392 4.87685 4.94146 5.08276 5.24119 5.34283 5.43648 5.50722 5.58663 5.67917 5.74040 5.75834 5.85901 5.94503 5.98122 6.13418 6.14899 6.24545 6.31929 6.35928 6.59279 6.75613 6.81892 6.87611 6.97806 7.02500 7.12190 7.41858 7.58667 7.79577 7.84286 8.00724 8.06758 8.39434 8.63848 8.73913 8.90889 9.89631 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.002638 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.927527 B =10611.232317 C =11282.416822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.234 4.234 11 C -0.030 4.030 12 C -0.275 4.275 13 C 0.583 3.417 14 O -0.565 6.565 15 N -0.617 5.617 16 C 0.085 3.915 17 C -0.109 4.109 18 C -0.101 4.101 19 C -0.080 4.080 20 C 0.031 3.969 21 C -0.197 4.197 22 C -0.212 4.212 23 C -0.046 4.046 24 O -0.170 6.170 25 C 0.157 3.843 26 C -0.075 4.075 27 C -0.174 4.174 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.202 0.798 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 -7.682 -4.724 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.121 3.879 10 C -0.254 4.254 11 C -0.049 4.049 12 C -0.280 4.280 13 C 0.377 3.623 14 O -0.445 6.445 15 N -0.350 5.350 16 C -0.038 4.038 17 C -0.146 4.146 18 C -0.119 4.119 19 C -0.081 4.081 20 C -0.020 4.020 21 C -0.217 4.217 22 C -0.231 4.231 23 C -0.114 4.114 24 O -0.065 6.065 25 C 0.034 3.966 26 C -0.094 4.094 27 C -0.193 4.193 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.219 0.781 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.115 -8.040 -4.552 15.235 hybrid contribution -0.003 0.551 -0.326 0.640 sum -12.117 -7.488 -4.877 15.056 Atomic orbital electron populations 1.69720 1.07810 1.29879 1.32573 1.26066 0.94842 1.01785 0.91933 0.86212 0.80558 0.79899 0.79609 1.18990 1.20052 1.18352 1.19821 0.97898 0.91010 1.38449 0.89847 1.17771 0.90801 0.92119 0.87184 1.20691 1.03850 0.92666 1.08161 1.20221 0.92752 0.96942 0.94974 1.18790 1.02791 0.91011 1.15372 1.18738 0.80032 0.88611 0.74878 1.90653 1.65530 1.39069 1.49198 1.48043 1.05866 1.09416 1.71722 1.22348 0.94916 0.90539 0.95971 1.20886 0.99562 0.95127 0.99034 1.22514 0.98228 0.93155 0.98038 1.18929 0.97505 0.89667 1.02044 1.20746 0.98946 0.92084 0.90215 1.21869 1.04619 0.99471 0.95697 1.21742 1.03741 0.99288 0.98335 1.24097 1.02934 0.96109 0.88212 1.84162 1.53009 1.31760 1.37600 1.20015 0.91084 0.88042 0.97453 1.20592 0.97747 0.92173 0.98884 1.21060 0.99332 0.96906 1.02027 0.90333 0.88399 0.88717 0.91577 0.85486 0.89127 0.89512 0.87139 0.83378 0.83401 0.78137 0.88341 0.90850 0.88233 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.97 10.83 55.56 0.60 -17.37 16 2 C 0.07 1.69 5.17 -17.31 -0.09 1.60 16 3 Si 0.91 17.06 29.59 -169.99 -5.03 12.03 16 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.85 9.05 -37.75 -0.34 -11.19 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.09 5.59 -106.80 -0.60 2.50 16 10 C -0.23 -5.55 9.73 -39.27 -0.38 -5.93 16 11 C -0.03 -0.68 9.59 -39.61 -0.38 -1.06 16 12 C -0.28 -6.16 5.37 -104.73 -0.56 -6.72 16 13 C 0.58 12.49 7.33 -12.42 -0.09 12.40 16 14 O -0.56 -13.62 16.49 5.29 0.09 -13.53 16 15 N -0.62 -10.82 2.97 -175.57 -0.52 -11.34 16 16 C 0.08 1.26 5.65 -3.56 -0.02 1.24 16 17 C -0.11 -1.32 6.06 -28.18 -0.17 -1.49 16 18 C -0.10 -1.24 9.49 -36.49 -0.35 -1.59 16 19 C -0.08 -1.11 5.76 -103.24 -0.60 -1.70 16 20 C 0.03 0.40 6.42 -36.72 -0.24 0.17 16 21 C -0.20 -2.37 10.84 -39.33 -0.43 -2.80 16 22 C -0.21 -2.14 10.88 -39.82 -0.43 -2.58 16 23 C -0.05 -0.44 12.08 29.51 0.36 -0.09 16 24 O -0.17 -2.16 10.67 4.47 0.05 -2.11 16 25 C 0.16 2.46 6.29 -5.28 -0.03 2.43 16 26 C -0.08 -1.61 7.29 -39.61 -0.29 -1.90 16 27 C -0.17 -4.12 8.64 -39.27 -0.34 -4.46 16 28 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.13 2.13 3.82 -51.93 -0.20 1.94 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.10 7.29 -51.93 -0.38 0.72 16 35 H 0.11 1.18 7.94 -52.49 -0.42 0.76 16 36 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.20 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.10 1.70 7.17 -51.93 -0.37 1.33 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.85 5.16 -52.49 -0.27 1.58 16 42 H 0.12 2.97 6.06 -52.49 -0.32 2.65 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -28.66 351.47 -9.38 -38.04 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.89 Total: 10.15 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -4.98 Total: -21.17 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.08 Total: -28.71 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.13 Total: -15.64 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.66 -9.38 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335948010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.961 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds