Wall clock time and date at job start Tue Mar 31 2020 13:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86805 * 119.99580 * 2 1 4 4 H 1.48507 * 109.47189 * 269.99892 * 3 2 1 5 5 H 1.48497 * 109.47066 * 30.00185 * 3 2 1 6 6 H 1.48504 * 109.46563 * 150.00251 * 3 2 1 7 7 C 1.40221 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00076 * 196.38387 * 7 2 1 9 9 C 1.41108 * 119.99855 * 16.38306 * 7 2 1 10 10 C 1.40896 * 120.10154 * 204.21227 * 9 7 2 11 11 C 1.36317 * 119.88767 * 179.97438 * 10 9 7 12 12 C 1.40006 * 120.11084 * 359.97438 * 11 10 9 13 13 C 1.47648 * 119.89760 * 180.02562 * 12 11 10 14 14 O 1.21585 * 120.00256 * 317.24802 * 13 12 11 15 15 N 1.34773 * 119.99917 * 137.24446 * 13 12 11 16 16 C 1.47306 * 121.32603 * 4.51671 * 15 13 12 17 17 C 1.53080 * 107.97520 * 117.58728 * 16 15 13 18 18 C 1.50002 * 110.40745 * 45.72654 * 17 16 15 19 19 C 1.31552 * 124.31840 * 341.03841 * 18 17 16 20 20 C 1.47078 * 118.30566 * 180.78401 * 19 18 17 21 21 C 1.36224 * 125.95649 * 65.00589 * 20 19 18 22 22 C 1.40830 * 106.72246 * 179.97438 * 21 20 19 23 23 C 1.34800 * 107.06646 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.71610 * 359.73694 * 23 22 21 25 25 C 1.46987 * 121.32757 * 184.23362 * 15 13 12 26 26 C 1.40014 * 120.21208 * 0.04726 * 12 11 10 27 27 C 1.36323 * 120.10268 * 359.94756 * 26 12 11 28 28 H 0.96994 * 120.00149 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.05106 * 359.70586 * 10 9 7 30 30 H 1.07996 * 119.94267 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.75804 * 237.20102 * 16 15 13 32 32 H 1.08993 * 109.76357 * 357.91446 * 16 15 13 33 33 H 1.08990 * 109.31704 * 166.01872 * 17 16 15 34 34 H 1.09002 * 109.31356 * 285.44511 * 17 16 15 35 35 H 1.07996 * 117.83448 * 161.01969 * 18 17 16 36 36 H 1.08001 * 126.63965 * 359.97424 * 21 20 19 37 37 H 1.08000 * 126.46569 * 179.97438 * 22 21 20 38 38 H 1.07994 * 125.64046 * 180.02562 * 23 22 21 39 39 H 1.09003 * 109.52159 * 343.25378 * 25 15 13 40 40 H 1.09003 * 109.52439 * 103.44508 * 25 15 13 41 41 H 1.07997 * 119.95290 * 179.97438 * 26 12 11 42 42 H 1.07998 * 120.05512 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0466 -1.4001 5 1 1.4378 2.6527 0.7001 6 1 3.5380 1.4402 0.7000 7 6 2.0077 -1.2143 -0.0005 8 1 3.0547 -1.2334 0.2633 9 6 1.3451 -2.4114 -0.3458 10 6 1.8344 -3.6488 0.1175 11 6 1.1906 -4.8025 -0.2183 12 6 0.0447 -4.7592 -1.0215 13 6 -0.6492 -6.0117 -1.3818 14 8 -0.0065 -6.9897 -1.7114 15 7 -1.9952 -6.0708 -1.3453 16 6 -2.8063 -4.8782 -1.0460 17 6 -3.6754 -4.5787 -2.2701 18 6 -4.3122 -5.8374 -2.7802 19 6 -3.8890 -7.0503 -2.4964 20 6 -4.6039 -8.1936 -3.0839 21 6 -4.6764 -8.4956 -4.4102 22 6 -5.4552 -9.6641 -4.5177 23 6 -5.8159 -10.0155 -3.2673 24 8 -5.2951 -9.1289 -2.4033 25 6 -2.7124 -7.3265 -1.6085 26 6 -0.4451 -3.5320 -1.4846 27 6 0.1918 -2.3730 -1.1541 28 1 -0.4850 0.8400 0.0004 29 1 2.7205 -3.6834 0.7338 30 1 1.5652 -5.7515 0.1360 31 1 -3.4415 -5.0720 -0.1817 32 1 -2.1531 -4.0303 -0.8405 33 1 -4.4536 -3.8671 -1.9944 34 1 -3.0557 -4.1447 -3.0548 35 1 -5.1751 -5.7416 -3.4224 36 1 -4.2243 -7.9455 -5.2222 37 1 -5.7145 -10.1810 -5.4298 38 1 -6.4196 -10.8712 -3.0035 39 1 -2.0428 -8.0322 -2.1004 40 1 -3.0622 -7.7505 -0.6672 41 1 -1.3291 -3.5036 -2.1043 42 1 -0.1864 -1.4269 -1.5121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335948010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:10 Heat of formation + Delta-G solvation = 11.471659 kcal Electronic energy + Delta-G solvation = -26032.490666 eV Core-core repulsion = 22329.776689 eV Total energy + Delta-G solvation = -3702.713977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44141 -41.36892 -39.18668 -38.36899 -35.72757 -34.79795 -33.75496 -32.85319 -31.91170 -31.33432 -29.41300 -28.01109 -26.51348 -24.84764 -23.52705 -22.85950 -22.61153 -22.22601 -20.78764 -19.36152 -19.17786 -18.44276 -17.80505 -17.56975 -17.09897 -16.82898 -16.23163 -16.08720 -15.74031 -15.47435 -15.16196 -14.94782 -14.53194 -14.43095 -14.16540 -13.88718 -13.81646 -13.68321 -13.52339 -13.40869 -13.26165 -12.96218 -12.83324 -12.61983 -12.61401 -12.34627 -11.98562 -11.76464 -11.32577 -11.07280 -10.91785 -10.71558 -10.28840 -9.75508 -9.48538 -9.38528 -9.25041 -8.73533 -6.44458 0.44162 0.54737 0.99297 1.13498 1.41138 1.45313 1.54449 1.66852 1.89908 1.98843 2.19309 2.26745 2.71031 3.58291 3.62735 3.68351 3.95233 4.02602 4.10080 4.14341 4.24337 4.29387 4.37015 4.41275 4.44345 4.51197 4.66966 4.87143 4.89767 4.93332 4.95734 5.01874 5.05666 5.11700 5.19213 5.29888 5.34613 5.51458 5.56607 5.59937 5.63233 5.81601 5.99491 6.01482 6.14299 6.24643 6.43778 6.57373 6.81641 6.91264 7.25221 8.20393 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.002638 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.927527 B =10611.232317 C =11282.416822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.249 4.249 11 C -0.039 4.039 12 C -0.283 4.283 13 C 0.580 3.420 14 O -0.601 6.601 15 N -0.609 5.609 16 C 0.079 3.921 17 C -0.105 4.105 18 C -0.087 4.087 19 C -0.095 4.095 20 C 0.003 3.997 21 C -0.203 4.203 22 C -0.223 4.223 23 C -0.038 4.038 24 O -0.188 6.188 25 C 0.159 3.841 26 C -0.060 4.060 27 C -0.191 4.191 28 H 0.297 0.703 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.241 0.759 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -7.127 -5.530 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.269 4.269 11 C -0.059 4.059 12 C -0.288 4.288 13 C 0.374 3.626 14 O -0.484 6.484 15 N -0.341 5.341 16 C -0.042 4.042 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.096 4.096 20 C -0.047 4.047 21 C -0.222 4.222 22 C -0.242 4.242 23 C -0.105 4.105 24 O -0.084 6.084 25 C 0.036 3.964 26 C -0.079 4.079 27 C -0.210 4.210 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.191 0.809 38 H 0.257 0.743 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.389 -7.486 -5.354 17.081 hybrid contribution 0.580 0.277 -0.068 0.646 sum -13.809 -7.208 -5.422 16.494 Atomic orbital electron populations 1.69728 1.08920 1.31439 1.31933 1.26832 0.95625 1.04499 0.90996 0.85150 0.79081 0.75583 0.79692 1.18535 1.18826 1.18448 1.20056 0.98128 0.92083 1.39972 0.90067 1.18115 0.91701 0.92748 0.87908 1.20816 1.04433 0.92791 1.08846 1.20374 0.93215 0.96936 0.95334 1.19012 1.02789 0.91955 1.15010 1.18607 0.81349 0.87742 0.74952 1.90627 1.66733 1.39897 1.51116 1.48023 1.04912 1.11075 1.70085 1.22508 0.94736 0.88672 0.98283 1.20924 0.99891 0.95875 0.97490 1.22699 0.98242 0.92406 0.97220 1.18765 0.97189 0.90803 1.02839 1.20694 1.00511 0.92842 0.90650 1.22135 1.04496 1.00130 0.95448 1.22090 1.03543 0.98871 0.99649 1.24956 1.01803 0.95923 0.87841 1.84147 1.53390 1.32281 1.38591 1.20027 0.91363 0.86652 0.98320 1.20786 0.97933 0.91068 0.98068 1.21072 0.99748 0.97394 1.02828 0.89218 0.87886 0.88346 0.89856 0.87331 0.85815 0.89622 0.84895 0.82963 0.80946 0.74284 0.90558 0.90138 0.85382 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.67 10.83 21.87 0.24 -36.44 16 2 C 0.04 1.79 5.17 85.35 0.44 2.23 16 3 Si 0.98 34.38 29.59 68.60 2.03 36.41 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 7 C -0.47 -23.69 9.05 23.46 0.21 -23.48 16 8 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 9 C 0.10 5.03 5.59 -21.28 -0.12 4.91 16 10 C -0.25 -12.24 9.73 22.47 0.22 -12.02 16 11 C -0.04 -1.88 9.59 22.25 0.21 -1.66 16 12 C -0.28 -12.90 5.37 -19.93 -0.11 -13.01 16 13 C 0.58 25.25 7.33 86.73 0.64 25.88 16 14 O -0.60 -29.83 16.49 -3.98 -0.07 -29.89 16 15 N -0.61 -21.22 2.97 -827.64 -2.45 -23.67 16 16 C 0.08 2.25 5.65 86.25 0.49 2.74 16 17 C -0.10 -2.27 6.06 29.66 0.18 -2.09 16 18 C -0.09 -1.94 9.49 24.90 0.24 -1.70 16 19 C -0.10 -2.51 5.76 -18.34 -0.11 -2.61 16 20 C 0.00 0.07 6.42 24.12 0.15 0.23 16 21 C -0.20 -4.58 10.84 22.43 0.24 -4.34 16 22 C -0.22 -3.97 10.88 22.11 0.24 -3.73 16 23 C -0.04 -0.64 12.08 67.03 0.81 0.17 16 24 O -0.19 -4.51 10.67 -6.94 -0.07 -4.58 16 25 C 0.16 4.99 6.29 85.31 0.54 5.52 16 26 C -0.06 -2.59 7.29 22.25 0.16 -2.42 16 27 C -0.19 -9.19 8.64 22.47 0.19 -9.00 16 28 H 0.30 12.09 8.29 -92.71 -0.77 11.32 16 29 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.11 3.54 3.82 -2.39 -0.01 3.53 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.94 7.29 -2.39 -0.02 1.92 16 35 H 0.13 2.40 7.94 -2.91 -0.02 2.38 16 36 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.08 2.73 7.17 -2.39 -0.02 2.71 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.13 4.66 5.16 -2.91 -0.02 4.64 16 42 H 0.12 5.78 6.06 -2.91 -0.02 5.76 16 Total: -1.00 -63.74 351.47 5.36 -58.38 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 1.05 Total: 34.19 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 4.63 Total: -34.40 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -2.22 Total: -60.11 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.14 Total: -34.47 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -63.74 5.36 -58.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335948010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.853 kcal (2) G-P(sol) polarization free energy of solvation -63.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds