Wall clock time and date at job start Tue Mar 31 2020 14:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.99910 * 2 1 4 4 C 1.38209 * 119.99834 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00244 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99755 * 359.81297 * 5 4 3 7 7 C 1.38206 * 120.00178 * 180.02562 * 2 1 3 8 8 C 1.50702 * 119.99934 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46869 * 90.00056 * 8 7 2 10 10 O 1.42102 * 110.54001 * 68.37599 * 9 8 7 11 11 O 1.42094 * 110.54459 * 291.62574 * 9 8 7 12 12 N 1.65607 * 104.44904 * 180.02562 * 9 8 7 13 13 C 1.46924 * 120.63051 * 269.72253 * 12 9 8 14 14 C 1.53187 * 108.77642 * 126.66488 * 13 12 9 15 15 C 1.53041 * 109.31211 * 54.63373 * 14 13 12 16 16 C 1.50699 * 109.45057 * 178.61966 * 15 14 13 17 17 H 1.07998 * 119.99794 * 120.06394 * 16 15 14 18 18 C 1.37878 * 120.00086 * 300.06181 * 16 15 14 19 19 N 1.31518 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47023 * 90.00156 * 20 18 16 22 22 H 1.48496 * 109.47317 * 210.00565 * 20 18 16 23 23 H 1.48500 * 109.47074 * 330.00091 * 20 18 16 24 24 C 1.53038 * 109.53768 * 298.63806 * 15 14 13 25 25 C 1.46926 * 120.62900 * 90.00281 * 12 9 8 26 26 H 1.09002 * 109.46868 * 269.97892 * 1 2 3 27 27 H 1.09003 * 109.46992 * 29.97804 * 1 2 3 28 28 H 1.08992 * 109.47180 * 149.97718 * 1 2 3 29 29 H 1.07998 * 119.99782 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99760 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.00410 * 179.97438 * 5 4 3 32 32 H 1.08006 * 119.99966 * 180.23666 * 6 5 4 33 33 H 1.09002 * 109.47378 * 330.00830 * 8 7 2 34 34 H 1.08995 * 109.47497 * 210.00047 * 8 7 2 35 35 H 1.09003 * 109.58516 * 246.45688 * 13 12 9 36 36 H 1.09002 * 109.58479 * 6.87847 * 13 12 9 37 37 H 1.08999 * 109.49975 * 294.68379 * 14 13 12 38 38 H 1.08998 * 109.50042 * 174.58459 * 14 13 12 39 39 H 1.09007 * 109.45589 * 58.65622 * 15 14 13 40 40 H 0.97003 * 119.99591 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.49677 * 301.40907 * 24 15 14 42 42 H 1.09001 * 109.52131 * 181.33314 * 24 15 14 43 43 H 1.09002 * 109.58798 * 353.11753 * 25 12 9 44 44 H 1.08996 * 109.58781 * 113.40224 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0039 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 16 1.1417 -3.0252 -1.7109 10 8 2.3608 -3.3871 -2.3449 11 8 0.2183 -2.1502 -2.3439 12 7 0.3163 -4.4536 -1.5659 13 6 1.0375 -5.7323 -1.5069 14 6 0.5823 -6.4981 -0.2607 15 6 -0.9417 -6.6364 -0.2803 16 6 -1.3901 -7.4187 0.9271 17 1 -2.0643 -6.9699 1.6416 18 6 -0.9398 -8.7076 1.1197 19 7 -0.1185 -9.2540 0.2498 20 14 -1.4951 -9.6772 2.6167 21 1 -2.7361 -10.4244 2.2901 22 1 -0.4299 -10.6343 3.0096 23 1 -1.7606 -8.7435 3.7405 24 6 -1.5821 -5.2467 -0.2540 25 6 -1.1514 -4.4667 -1.5001 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5141 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3518 0.0001 -0.0014 32 1 4.1207 -2.1322 0.0078 33 1 0.4923 -2.3718 0.5136 34 1 2.0338 -3.2618 0.5129 35 1 0.8147 -6.3190 -2.3981 36 1 2.1097 -5.5447 -1.4491 37 1 0.8867 -5.9529 0.6327 38 1 1.0374 -7.4885 -0.2558 39 1 -1.2472 -7.1600 -1.1862 40 1 0.1980 -10.1610 0.3852 41 1 -1.2574 -4.7133 0.6393 42 1 -2.6675 -5.3459 -0.2441 43 1 -1.5236 -3.4441 -1.4378 44 1 -1.5529 -4.9479 -2.3919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335979583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:42 Heat of formation + Delta-G solvation = -59.841384 kcal Electronic energy + Delta-G solvation = -26018.999332 eV Core-core repulsion = 22448.636941 eV Total energy + Delta-G solvation = -3570.362391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72009 -37.77385 -36.98284 -35.74426 -33.65578 -33.45183 -32.36847 -30.89680 -30.12151 -27.98754 -26.68583 -25.77976 -22.61780 -22.36824 -22.27107 -21.09651 -19.44267 -18.39779 -17.46892 -16.85636 -16.33563 -16.19112 -15.97827 -15.38950 -15.13198 -14.59630 -14.05261 -13.89846 -13.51599 -13.39400 -13.24085 -13.14256 -12.93100 -12.85563 -12.72691 -12.42715 -12.26858 -12.14029 -11.92258 -11.83665 -11.37465 -11.26407 -11.17307 -11.11317 -10.98401 -10.82021 -10.65399 -10.41994 -10.10121 -9.63862 -9.27965 -9.06513 -8.95582 -8.73699 -8.42211 -8.25714 -6.04758 -4.11457 0.28994 1.18110 1.21997 2.89318 3.26080 3.33642 3.35940 3.53320 3.95207 4.21411 4.35082 4.38546 4.63499 4.75148 4.82107 4.99530 5.11451 5.15209 5.24949 5.34819 5.40506 5.52607 5.54147 5.67067 5.72176 5.84432 5.87204 6.04650 6.06636 6.12798 6.24133 6.30020 6.30959 6.38736 6.39564 6.41519 6.68371 6.78520 6.86267 7.03275 7.12707 7.37374 7.67006 7.90602 8.03955 8.37836 8.92405 9.53854 11.00553 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003464 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.284274 B = 8080.229831 C = 8264.681409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.102 4.102 7 C -0.088 4.088 8 C -0.593 4.593 9 S 2.606 3.394 10 O -0.955 6.955 11 O -0.956 6.956 12 N -0.991 5.991 13 C 0.117 3.883 14 C -0.125 4.125 15 C 0.050 3.950 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.125 4.125 25 C 0.121 3.879 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 17.496 -0.353 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.090 4.090 8 C -0.719 4.719 9 S 2.699 3.301 10 O -0.946 6.946 11 O -0.946 6.946 12 N -0.830 5.830 13 C -0.007 4.007 14 C -0.165 4.165 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.164 4.164 25 C -0.004 4.004 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.340 17.707 -1.200 18.534 hybrid contribution -0.260 -0.808 1.704 1.904 sum 5.080 16.899 0.504 17.653 Atomic orbital electron populations 1.21030 0.90661 1.04351 1.02641 1.19896 0.96557 0.92416 0.98168 1.21046 0.94306 0.97360 1.01195 1.21217 0.94312 0.98196 0.99320 1.21143 1.00148 0.92200 1.00826 1.21204 0.93136 0.99149 0.98602 1.18917 0.93607 0.91983 1.04511 1.29819 1.09995 1.03968 1.28133 1.05215 0.74147 0.73552 0.77204 1.93560 1.46833 1.82149 1.72027 1.93542 1.62898 1.66019 1.72147 1.57661 1.15434 1.20916 1.88992 1.21728 0.94483 0.83060 1.01413 1.22047 1.00553 1.00941 0.92933 1.18588 0.90997 0.89749 0.97497 1.21209 1.27777 0.98157 1.08049 0.92736 1.24966 0.95055 0.97628 0.96340 1.69842 1.32865 1.14669 1.35504 0.86632 0.78343 0.79945 0.83272 1.20745 1.21281 1.20040 1.22038 1.00194 0.99046 0.95159 1.21532 0.77983 1.00611 1.00243 0.90620 0.90762 0.90379 0.85553 0.85734 0.85524 0.85117 0.84011 0.83916 0.91494 0.90993 0.94407 0.87772 0.95321 0.92942 0.93054 0.92071 0.90768 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.19 36.01 0.33 -1.08 16 2 C -0.07 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.09 10.05 -39.59 -0.40 -1.48 16 5 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 6 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 7 C -0.09 -1.16 5.14 -104.63 -0.54 -1.70 16 8 C -0.59 -7.71 5.57 36.01 0.20 -7.51 16 9 S 2.61 41.64 5.37 -107.50 -0.58 41.06 16 10 O -0.96 -17.62 16.72 -57.54 -0.96 -18.59 16 11 O -0.96 -16.54 15.07 -57.54 -0.87 -17.40 16 12 N -0.99 -16.75 3.22 -113.53 -0.37 -17.11 16 13 C 0.12 2.16 6.31 -3.71 -0.02 2.13 16 14 C -0.13 -2.68 5.15 -26.61 -0.14 -2.82 16 15 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 16 C -0.51 -13.23 8.56 -34.44 -0.29 -13.52 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -24.12 11.30 55.43 0.63 -23.49 16 20 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.13 -2.33 5.30 -26.62 -0.14 -2.47 16 25 C 0.12 2.00 6.31 -3.71 -0.02 1.97 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.08 0.93 4.95 -51.93 -0.26 0.68 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.14 1.63 6.70 -51.92 -0.35 1.28 16 34 H 0.14 1.68 8.08 -51.93 -0.42 1.26 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 39 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.06 7.10 -51.93 -0.37 0.69 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -30.84 360.15 -11.52 -42.35 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.69 Total: 2.76 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -3.09 Total: -30.46 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.26 Total: -40.60 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.83 Total: -35.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 41.64 SS G_CDS: -0.58 Total: 41.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.84 -11.52 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.487 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds