Wall clock time and date at job start Tue Mar 31 2020 14:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.99910 * 2 1 4 4 C 1.38209 * 119.99834 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00244 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99755 * 359.81297 * 5 4 3 7 7 C 1.38206 * 120.00178 * 180.02562 * 2 1 3 8 8 C 1.50702 * 119.99934 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46869 * 90.00056 * 8 7 2 10 10 O 1.42102 * 110.54001 * 68.37599 * 9 8 7 11 11 O 1.42094 * 110.54459 * 291.62574 * 9 8 7 12 12 N 1.65607 * 104.44904 * 180.02562 * 9 8 7 13 13 C 1.46924 * 120.63051 * 269.72253 * 12 9 8 14 14 C 1.53187 * 108.77642 * 126.66488 * 13 12 9 15 15 C 1.53041 * 109.31211 * 54.63373 * 14 13 12 16 16 C 1.50699 * 109.45057 * 178.61966 * 15 14 13 17 17 H 1.07998 * 119.99794 * 120.06394 * 16 15 14 18 18 C 1.37878 * 120.00086 * 300.06181 * 16 15 14 19 19 N 1.31518 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47023 * 90.00156 * 20 18 16 22 22 H 1.48496 * 109.47317 * 210.00565 * 20 18 16 23 23 H 1.48500 * 109.47074 * 330.00091 * 20 18 16 24 24 C 1.53038 * 109.53768 * 298.63806 * 15 14 13 25 25 C 1.46926 * 120.62900 * 90.00281 * 12 9 8 26 26 H 1.09002 * 109.46868 * 269.97892 * 1 2 3 27 27 H 1.09003 * 109.46992 * 29.97804 * 1 2 3 28 28 H 1.08992 * 109.47180 * 149.97718 * 1 2 3 29 29 H 1.07998 * 119.99782 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99760 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.00410 * 179.97438 * 5 4 3 32 32 H 1.08006 * 119.99966 * 180.23666 * 6 5 4 33 33 H 1.09002 * 109.47378 * 330.00830 * 8 7 2 34 34 H 1.08995 * 109.47497 * 210.00047 * 8 7 2 35 35 H 1.09003 * 109.58516 * 246.45688 * 13 12 9 36 36 H 1.09002 * 109.58479 * 6.87847 * 13 12 9 37 37 H 1.08999 * 109.49975 * 294.68379 * 14 13 12 38 38 H 1.08998 * 109.50042 * 174.58459 * 14 13 12 39 39 H 1.09007 * 109.45589 * 58.65622 * 15 14 13 40 40 H 0.97003 * 119.99591 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.49677 * 301.40907 * 24 15 14 42 42 H 1.09001 * 109.52131 * 181.33314 * 24 15 14 43 43 H 1.09002 * 109.58798 * 353.11753 * 25 12 9 44 44 H 1.08996 * 109.58781 * 113.40224 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0039 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 16 1.1417 -3.0252 -1.7109 10 8 2.3608 -3.3871 -2.3449 11 8 0.2183 -2.1502 -2.3439 12 7 0.3163 -4.4536 -1.5659 13 6 1.0375 -5.7323 -1.5069 14 6 0.5823 -6.4981 -0.2607 15 6 -0.9417 -6.6364 -0.2803 16 6 -1.3901 -7.4187 0.9271 17 1 -2.0643 -6.9699 1.6416 18 6 -0.9398 -8.7076 1.1197 19 7 -0.1185 -9.2540 0.2498 20 14 -1.4951 -9.6772 2.6167 21 1 -2.7361 -10.4244 2.2901 22 1 -0.4299 -10.6343 3.0096 23 1 -1.7606 -8.7435 3.7405 24 6 -1.5821 -5.2467 -0.2540 25 6 -1.1514 -4.4667 -1.5001 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5141 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3518 0.0001 -0.0014 32 1 4.1207 -2.1322 0.0078 33 1 0.4923 -2.3718 0.5136 34 1 2.0338 -3.2618 0.5129 35 1 0.8147 -6.3190 -2.3981 36 1 2.1097 -5.5447 -1.4491 37 1 0.8867 -5.9529 0.6327 38 1 1.0374 -7.4885 -0.2558 39 1 -1.2472 -7.1600 -1.1862 40 1 0.1980 -10.1610 0.3852 41 1 -1.2574 -4.7133 0.6393 42 1 -2.6675 -5.3459 -0.2441 43 1 -1.5236 -3.4441 -1.4378 44 1 -1.5529 -4.9479 -2.3919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335979583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:41 Heat of formation + Delta-G solvation = -77.305686 kcal Electronic energy + Delta-G solvation = -26019.756641 eV Core-core repulsion = 22448.636941 eV Total energy + Delta-G solvation = -3571.119700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53024 -39.30883 -38.30749 -37.07241 -35.26235 -34.49452 -33.20053 -32.60799 -31.68678 -28.87205 -27.64486 -27.46979 -24.18508 -23.91399 -23.17727 -21.97900 -20.93703 -19.77286 -18.89292 -18.18757 -17.84540 -17.33447 -17.01022 -16.52317 -16.43761 -15.94911 -15.44247 -15.04995 -14.86957 -14.64453 -14.46185 -14.39807 -14.23174 -14.02820 -13.80346 -13.67616 -13.46653 -13.37671 -13.07714 -13.04500 -12.89733 -12.79725 -12.56629 -12.41075 -12.19038 -12.06853 -11.95362 -11.94372 -11.84813 -11.39090 -10.95166 -10.78039 -10.36482 -9.94881 -9.74392 -9.52022 -8.03898 -6.17295 -0.91657 0.35297 0.38530 1.43009 1.45428 1.53613 1.60675 2.46283 2.66883 2.83141 3.03602 3.22928 3.34991 3.70920 3.77195 3.95493 4.02562 4.19750 4.29071 4.39895 4.40990 4.46029 4.53522 4.58017 4.65269 4.75439 4.76798 4.78523 4.83114 4.88132 4.95506 5.05423 5.13946 5.27667 5.33519 5.37745 5.44648 5.52340 5.55951 5.58097 5.66042 5.73467 6.01337 6.05455 6.21947 6.43532 6.95090 7.50849 8.99394 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003464 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.284274 B = 8080.229831 C = 8264.681409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.572 4.572 9 S 2.608 3.392 10 O -0.986 6.986 11 O -0.972 6.972 12 N -0.995 5.995 13 C 0.126 3.874 14 C -0.117 4.117 15 C 0.044 3.956 16 C -0.529 4.529 17 H 0.054 0.946 18 C 0.014 3.986 19 N -0.915 5.915 20 Si 0.948 3.052 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.268 1.268 24 C -0.117 4.117 25 C 0.122 3.878 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.073 0.927 39 H -0.004 1.004 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 19.968 0.873 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.119 4.119 8 C -0.702 4.702 9 S 2.706 3.294 10 O -0.977 6.977 11 O -0.962 6.962 12 N -0.833 5.833 13 C 0.001 3.999 14 C -0.156 4.156 15 C 0.026 3.974 16 C -0.567 4.567 17 H 0.072 0.928 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.774 3.226 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.193 1.193 24 C -0.156 4.156 25 C -0.003 4.003 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.014 0.986 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.482 20.166 -0.015 20.898 hybrid contribution -0.272 -1.467 1.346 2.009 sum 5.210 18.699 1.330 19.457 Atomic orbital electron populations 1.21110 0.90058 1.04344 1.03658 1.20187 0.97333 0.92778 0.98292 1.21432 0.94941 0.97809 1.00406 1.21653 0.94345 0.99235 0.97453 1.21507 1.01515 0.91906 1.00120 1.21456 0.93223 1.00247 0.99220 1.19053 0.94131 0.92085 1.06603 1.29573 1.11356 1.04684 1.24546 1.05072 0.73179 0.72815 0.78338 1.93515 1.47723 1.82506 1.73918 1.93513 1.63154 1.65875 1.73665 1.57612 1.15585 1.20631 1.89448 1.21487 0.95384 0.83561 0.99460 1.21830 0.99397 0.99805 0.94586 1.18586 0.92250 0.91691 0.94922 1.21605 1.27530 0.98723 1.08850 0.92796 1.25677 0.95312 0.98737 0.98764 1.69986 1.33820 1.14768 1.36945 0.85716 0.77728 0.78633 0.80486 1.20632 1.21284 1.19306 1.21911 1.00214 0.96766 0.96749 1.21559 0.77858 1.01810 0.99058 0.89067 0.89471 0.91716 0.83071 0.82624 0.83234 0.84905 0.82307 0.82830 0.92462 0.89607 0.93884 0.90904 0.98605 0.93158 0.91964 0.91532 0.88018 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.19 71.24 0.65 -1.96 16 2 C -0.08 -1.88 5.88 -19.86 -0.12 -1.99 16 3 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 4 C -0.11 -1.76 10.05 22.27 0.22 -1.53 16 5 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 6 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 7 C -0.12 -2.87 5.14 -19.87 -0.10 -2.97 16 8 C -0.57 -13.99 5.57 71.24 0.40 -13.60 16 9 S 2.61 81.28 5.37 -56.49 -0.30 80.97 16 10 O -0.99 -36.26 16.72 -127.65 -2.13 -38.39 16 11 O -0.97 -32.66 15.07 -127.65 -1.92 -34.58 16 12 N -1.00 -33.12 3.22 -513.09 -1.65 -34.77 16 13 C 0.13 4.69 6.31 86.36 0.55 5.24 16 14 C -0.12 -5.08 5.15 30.67 0.16 -4.92 16 15 C 0.04 2.05 2.06 -11.51 -0.02 2.03 16 16 C -0.53 -27.47 8.56 25.60 0.22 -27.25 16 17 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 18 C 0.01 0.72 5.30 84.65 0.45 1.17 16 19 N -0.92 -50.87 11.30 21.45 0.24 -50.63 16 20 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.12 -4.28 5.30 30.67 0.16 -4.12 16 25 C 0.12 3.90 6.31 86.36 0.54 4.45 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 28 H 0.06 1.42 4.95 -2.39 -0.01 1.41 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.16 3.31 6.70 -2.39 -0.02 3.29 16 34 H 0.15 3.40 8.08 -2.39 -0.02 3.38 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.93 7.10 -2.39 -0.02 2.91 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 3.65 6.03 -2.39 -0.01 3.64 16 39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.71 7.10 -2.39 -0.02 2.70 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.90 360.15 1.00 -65.90 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.98 Total: 19.68 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 3.77 Total: -52.38 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -1.41 Total: -85.40 kcal Atomic # 8 Polarization: -68.92 SS G_CDS: -4.06 Total: -72.98 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 81.28 SS G_CDS: -0.30 Total: 80.97 kcal Total: -66.90 1.00 -65.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.410 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds