Wall clock time and date at job start Tue Mar 31 2020 14:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38258 * 119.99972 * 2 1 4 4 C 1.38209 * 120.00127 * 180.34585 * 3 2 1 5 5 C 1.38259 * 119.99903 * 359.90723 * 4 3 2 6 6 S 1.76199 * 120.00256 * 180.02562 * 5 4 3 7 7 O 1.42106 * 106.40199 * 356.93526 * 6 5 4 8 8 O 1.42101 * 106.40578 * 129.85069 * 6 5 4 9 9 N 1.65597 * 107.21980 * 243.39408 * 6 5 4 10 10 C 1.46926 * 120.63116 * 263.79962 * 9 6 5 11 11 C 1.52762 * 109.00848 * 233.58440 * 10 9 6 12 12 C 1.53037 * 109.38030 * 305.58718 * 11 10 9 13 13 C 1.50706 * 109.44462 * 181.25715 * 12 11 10 14 14 H 1.08008 * 119.99523 * 245.34556 * 13 12 11 15 15 C 1.37869 * 120.00501 * 65.34211 * 13 12 11 16 16 N 1.31517 * 119.99818 * 6.42303 * 15 13 12 17 17 Si 1.86797 * 120.00424 * 186.42120 * 15 13 12 18 18 H 1.48500 * 109.47176 * 94.98312 * 17 15 13 19 19 H 1.48500 * 109.47195 * 214.98545 * 17 15 13 20 20 H 1.48504 * 109.47101 * 334.98233 * 17 15 13 21 21 C 1.53037 * 109.53981 * 61.24359 * 12 11 10 22 22 C 1.46927 * 120.63010 * 84.07868 * 9 6 5 23 23 C 1.38217 * 120.00137 * 0.04667 * 5 4 3 24 24 C 1.50701 * 120.00173 * 180.02562 * 23 5 4 25 25 C 1.38209 * 119.99755 * 180.27407 * 2 1 3 26 26 H 1.08999 * 109.46828 * 269.72843 * 1 2 3 27 27 H 1.08999 * 109.46723 * 29.72698 * 1 2 3 28 28 H 1.09003 * 109.46847 * 149.72673 * 1 2 3 29 29 H 1.07997 * 120.00080 * 0.27626 * 3 2 1 30 30 H 1.08000 * 120.00376 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.58484 * 353.41691 * 10 9 6 32 32 H 1.09005 * 109.58448 * 113.84286 * 10 9 6 33 33 H 1.09006 * 109.56140 * 185.55137 * 11 10 9 34 34 H 1.09003 * 109.35956 * 65.49812 * 11 10 9 35 35 H 1.09001 * 109.46178 * 301.21436 * 12 11 10 36 36 H 0.96998 * 120.00222 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.49869 * 178.67804 * 21 12 11 38 38 H 1.09001 * 109.52532 * 58.59715 * 21 12 11 39 39 H 1.08998 * 109.58841 * 246.15322 * 22 9 6 40 40 H 1.09001 * 109.58654 * 6.44287 * 22 9 6 41 41 H 1.08996 * 109.46817 * 275.51913 * 24 23 5 42 42 H 1.08994 * 109.46873 * 35.52136 * 24 23 5 43 43 H 1.09000 * 109.46879 * 155.52201 * 24 23 5 44 44 H 1.07994 * 120.00371 * 359.70247 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0072 5 6 4.2717 0.0001 -0.0125 6 16 6.0337 0.0000 -0.0210 7 8 6.4346 1.3614 -0.0937 8 8 6.4401 -0.8752 1.0221 9 7 6.5170 -0.7061 -1.4388 10 6 6.8688 -2.1319 -1.4831 11 6 8.2622 -2.2820 -2.0912 12 6 8.3006 -1.5821 -3.4516 13 6 9.6654 -1.7557 -4.0667 14 1 10.3006 -0.8961 -4.2228 15 6 10.1033 -3.0114 -4.4302 16 7 9.2858 -4.0392 -4.3584 17 14 11.8575 -3.2533 -5.0246 18 1 12.7129 -3.6722 -3.8853 19 1 11.8839 -4.3023 -6.0754 20 1 12.3703 -1.9776 -5.5859 21 6 8.0097 -0.0909 -3.2685 22 6 6.6081 0.0828 -2.6750 23 6 3.5807 -1.1970 -0.0116 24 6 4.3342 -2.5021 -0.0167 25 6 2.1980 -1.1969 -0.0057 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8876 -0.5181 29 1 1.6584 2.1326 0.0045 30 1 4.1204 2.1327 -0.0076 31 1 6.8668 -2.5403 -0.4725 32 1 6.1453 -2.6678 -2.0976 33 1 8.4924 -3.3397 -2.2195 34 1 8.9971 -1.8270 -1.4271 35 1 7.5485 -2.0211 -4.1072 36 1 9.5936 -4.9226 -4.6144 37 1 8.0603 0.4110 -4.2348 38 1 8.7470 0.3439 -2.5936 39 1 5.8630 -0.2689 -3.3886 40 1 6.4317 1.1348 -2.4510 41 1 4.5972 -2.7656 -1.0411 42 1 5.2426 -2.3994 0.5767 43 1 3.7076 -3.2850 0.4104 44 1 1.6581 -2.1322 -0.0053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336572237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:45 Heat of formation + Delta-G solvation = -60.874897 kcal Electronic energy + Delta-G solvation = -26206.113359 eV Core-core repulsion = 22635.706152 eV Total energy + Delta-G solvation = -3570.407207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67436 -37.80527 -37.16729 -35.63839 -33.93249 -33.35656 -32.24877 -30.85629 -30.20938 -27.70931 -27.05380 -25.73181 -22.73699 -22.45239 -22.27630 -21.30932 -19.54243 -18.54973 -17.56960 -17.20637 -16.30348 -16.06363 -15.26830 -15.21874 -14.53784 -14.51857 -14.37469 -14.02429 -13.74111 -13.41563 -13.30433 -13.11891 -12.94822 -12.72800 -12.68890 -12.39847 -12.27384 -12.05151 -11.94790 -11.85971 -11.54091 -11.37023 -11.28198 -10.92867 -10.85729 -10.64248 -10.52088 -10.34067 -10.11791 -9.59371 -9.23449 -9.12661 -8.99284 -8.91144 -8.36627 -8.29787 -6.02327 -4.04571 0.52201 0.77882 1.16450 3.09633 3.30898 3.38382 3.41117 3.41889 3.94625 4.38308 4.44357 4.50693 4.60301 4.69526 5.02513 5.04443 5.17398 5.22468 5.25525 5.29843 5.40267 5.49111 5.55594 5.66580 5.76308 5.77613 5.87175 5.96815 6.02872 6.07894 6.12483 6.18215 6.26222 6.34212 6.44982 6.45329 6.70934 6.73355 6.92216 7.08407 7.18428 7.38207 7.71021 7.94528 8.00741 8.43555 8.99477 9.59605 11.06116 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.003492 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.623841 B = 8017.385646 C = 8314.940224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.033 4.033 3 C -0.153 4.153 4 C -0.016 4.016 5 C -0.685 4.685 6 S 2.690 3.310 7 O -0.964 6.964 8 O -0.959 6.959 9 N -0.986 5.986 10 C 0.112 3.888 11 C -0.117 4.117 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.120 4.120 22 C 0.122 3.878 23 C 0.031 3.969 24 C -0.182 4.182 25 C -0.148 4.148 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.134 5.979 8.079 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.034 4.034 3 C -0.172 4.172 4 C -0.035 4.035 5 C -0.771 4.771 6 S 2.781 3.219 7 O -0.954 6.954 8 O -0.950 6.950 9 N -0.827 5.827 10 C -0.012 4.012 11 C -0.156 4.156 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.159 4.159 22 C -0.003 4.003 23 C 0.030 3.970 24 C -0.238 4.238 25 C -0.166 4.166 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.632 6.109 8.696 19.738 hybrid contribution 0.132 -0.352 -0.626 0.730 sum -16.500 5.756 8.071 19.249 Atomic orbital electron populations 1.20914 0.90774 1.03303 1.02775 1.20204 0.96258 0.93319 0.93585 1.21103 0.94134 0.97793 1.04155 1.20944 0.94604 0.96705 0.91242 1.31033 1.27955 0.98844 1.19218 1.01977 0.73575 0.73170 0.73154 1.93527 1.80951 1.34504 1.86449 1.93509 1.81068 1.66235 1.54152 1.57492 1.80333 1.19951 1.24874 1.21872 0.99817 0.78151 1.01338 1.21855 0.91792 1.03790 0.98195 1.18616 0.97169 0.88666 0.92511 1.21206 1.00941 0.92997 1.39976 0.92686 1.24950 0.97179 0.96284 0.95456 1.69925 1.34548 0.99749 1.48692 0.86652 0.85501 0.77845 0.78424 1.20761 1.21384 1.19957 1.21964 0.93490 1.01129 0.99351 1.21551 1.00026 0.93785 0.84936 1.19564 0.94044 0.93632 0.89762 1.21919 1.02793 0.93920 1.05140 1.21051 0.93515 0.97904 1.04175 0.90557 0.91054 0.91040 0.85320 0.84072 0.90097 0.91828 0.89262 0.93875 0.94784 0.93069 0.91993 0.92703 0.91992 0.90650 0.88548 0.87527 0.90016 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.03 -0.34 5.88 -104.62 -0.62 -0.96 16 3 C -0.15 -1.64 9.70 -39.58 -0.38 -2.02 16 4 C -0.02 -0.20 9.55 -39.58 -0.38 -0.58 16 5 C -0.68 -9.79 5.90 -39.58 -0.23 -10.02 16 6 S 2.69 44.64 5.10 -107.50 -0.55 44.09 16 7 O -0.96 -17.65 15.74 -57.17 -0.90 -18.55 16 8 O -0.96 -17.59 14.18 -57.17 -0.81 -18.40 16 9 N -0.99 -16.72 3.23 -113.76 -0.37 -17.09 16 10 C 0.11 1.99 4.51 -3.93 -0.02 1.97 16 11 C -0.12 -2.57 5.19 -26.83 -0.14 -2.71 16 12 C 0.05 1.15 1.93 -91.73 -0.18 0.97 16 13 C -0.51 -13.62 8.49 -34.44 -0.29 -13.91 16 14 H 0.05 1.46 7.76 -52.48 -0.41 1.06 16 15 C 0.06 1.68 5.24 -17.82 -0.09 1.59 16 16 N -0.89 -24.53 12.00 55.43 0.67 -23.86 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.12 -2.39 5.30 -26.61 -0.14 -2.54 16 22 C 0.12 2.04 6.46 -3.71 -0.02 2.02 16 23 C 0.03 0.41 5.88 -104.62 -0.61 -0.20 16 24 C -0.18 -2.24 8.14 36.01 0.29 -1.95 16 25 C -0.15 -1.65 9.34 -39.58 -0.37 -2.02 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.66 7.34 -52.49 -0.39 1.28 16 31 H 0.08 1.34 5.48 -51.93 -0.28 1.05 16 32 H 0.06 1.05 6.89 -51.93 -0.36 0.69 16 33 H 0.09 2.16 6.74 -51.93 -0.35 1.81 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.15 7.07 -51.93 -0.37 0.78 16 41 H 0.10 1.15 5.87 -51.93 -0.30 0.84 16 42 H 0.11 1.49 4.01 -51.93 -0.21 1.28 16 43 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -31.09 351.24 -10.95 -42.04 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.44 Total: 1.35 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -2.83 Total: -30.81 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.30 Total: -40.95 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.71 Total: -36.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.55 Total: 44.09 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.09 -10.95 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336572237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.833 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds