Wall clock time and date at job start Tue Mar 31 2020 14:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38258 * 119.99972 * 2 1 4 4 C 1.38209 * 120.00127 * 180.34585 * 3 2 1 5 5 C 1.38259 * 119.99903 * 359.90723 * 4 3 2 6 6 S 1.76199 * 120.00256 * 180.02562 * 5 4 3 7 7 O 1.42106 * 106.40199 * 356.93526 * 6 5 4 8 8 O 1.42101 * 106.40578 * 129.85069 * 6 5 4 9 9 N 1.65597 * 107.21980 * 243.39408 * 6 5 4 10 10 C 1.46926 * 120.63116 * 263.79962 * 9 6 5 11 11 C 1.52762 * 109.00848 * 233.58440 * 10 9 6 12 12 C 1.53037 * 109.38030 * 305.58718 * 11 10 9 13 13 C 1.50706 * 109.44462 * 181.25715 * 12 11 10 14 14 H 1.08008 * 119.99523 * 245.34556 * 13 12 11 15 15 C 1.37869 * 120.00501 * 65.34211 * 13 12 11 16 16 N 1.31517 * 119.99818 * 6.42303 * 15 13 12 17 17 Si 1.86797 * 120.00424 * 186.42120 * 15 13 12 18 18 H 1.48500 * 109.47176 * 94.98312 * 17 15 13 19 19 H 1.48500 * 109.47195 * 214.98545 * 17 15 13 20 20 H 1.48504 * 109.47101 * 334.98233 * 17 15 13 21 21 C 1.53037 * 109.53981 * 61.24359 * 12 11 10 22 22 C 1.46927 * 120.63010 * 84.07868 * 9 6 5 23 23 C 1.38217 * 120.00137 * 0.04667 * 5 4 3 24 24 C 1.50701 * 120.00173 * 180.02562 * 23 5 4 25 25 C 1.38209 * 119.99755 * 180.27407 * 2 1 3 26 26 H 1.08999 * 109.46828 * 269.72843 * 1 2 3 27 27 H 1.08999 * 109.46723 * 29.72698 * 1 2 3 28 28 H 1.09003 * 109.46847 * 149.72673 * 1 2 3 29 29 H 1.07997 * 120.00080 * 0.27626 * 3 2 1 30 30 H 1.08000 * 120.00376 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.58484 * 353.41691 * 10 9 6 32 32 H 1.09005 * 109.58448 * 113.84286 * 10 9 6 33 33 H 1.09006 * 109.56140 * 185.55137 * 11 10 9 34 34 H 1.09003 * 109.35956 * 65.49812 * 11 10 9 35 35 H 1.09001 * 109.46178 * 301.21436 * 12 11 10 36 36 H 0.96998 * 120.00222 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.49869 * 178.67804 * 21 12 11 38 38 H 1.09001 * 109.52532 * 58.59715 * 21 12 11 39 39 H 1.08998 * 109.58841 * 246.15322 * 22 9 6 40 40 H 1.09001 * 109.58654 * 6.44287 * 22 9 6 41 41 H 1.08996 * 109.46817 * 275.51913 * 24 23 5 42 42 H 1.08994 * 109.46873 * 35.52136 * 24 23 5 43 43 H 1.09000 * 109.46879 * 155.52201 * 24 23 5 44 44 H 1.07994 * 120.00371 * 359.70247 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0072 5 6 4.2717 0.0001 -0.0125 6 16 6.0337 0.0000 -0.0210 7 8 6.4346 1.3614 -0.0937 8 8 6.4401 -0.8752 1.0221 9 7 6.5170 -0.7061 -1.4388 10 6 6.8688 -2.1319 -1.4831 11 6 8.2622 -2.2820 -2.0912 12 6 8.3006 -1.5821 -3.4516 13 6 9.6654 -1.7557 -4.0667 14 1 10.3006 -0.8961 -4.2228 15 6 10.1033 -3.0114 -4.4302 16 7 9.2858 -4.0392 -4.3584 17 14 11.8575 -3.2533 -5.0246 18 1 12.7129 -3.6722 -3.8853 19 1 11.8839 -4.3023 -6.0754 20 1 12.3703 -1.9776 -5.5859 21 6 8.0097 -0.0909 -3.2685 22 6 6.6081 0.0828 -2.6750 23 6 3.5807 -1.1970 -0.0116 24 6 4.3342 -2.5021 -0.0167 25 6 2.1980 -1.1969 -0.0057 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8876 -0.5181 29 1 1.6584 2.1326 0.0045 30 1 4.1204 2.1327 -0.0076 31 1 6.8668 -2.5403 -0.4725 32 1 6.1453 -2.6678 -2.0976 33 1 8.4924 -3.3397 -2.2195 34 1 8.9971 -1.8270 -1.4271 35 1 7.5485 -2.0211 -4.1072 36 1 9.5936 -4.9226 -4.6144 37 1 8.0603 0.4110 -4.2348 38 1 8.7470 0.3439 -2.5936 39 1 5.8630 -0.2689 -3.3886 40 1 6.4317 1.1348 -2.4510 41 1 4.5972 -2.7656 -1.0411 42 1 5.2426 -2.3994 0.5767 43 1 3.7076 -3.2850 0.4104 44 1 1.6581 -2.1322 -0.0053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336572237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:44 Heat of formation + Delta-G solvation = -79.064335 kcal Electronic energy + Delta-G solvation = -26206.902113 eV Core-core repulsion = 22635.706152 eV Total energy + Delta-G solvation = -3571.195961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53806 -39.36490 -38.52651 -37.01141 -35.32298 -34.64997 -33.15233 -32.60468 -31.78326 -28.43266 -27.96736 -27.58792 -24.24295 -23.96372 -23.39320 -22.21571 -21.15242 -19.79029 -18.98790 -18.45226 -18.17866 -17.28317 -16.53100 -16.33871 -16.09525 -15.50672 -15.40559 -15.32680 -14.95976 -14.89847 -14.47381 -14.46034 -14.21213 -14.01271 -13.79224 -13.67790 -13.37504 -13.18893 -13.08285 -12.98327 -12.87869 -12.77930 -12.63914 -12.55481 -12.42232 -12.11690 -12.06912 -11.86645 -11.60527 -11.40678 -10.87694 -10.79923 -10.37690 -10.10308 -9.88855 -9.74158 -8.08476 -6.16713 -0.69467 -0.20786 0.29564 1.41241 1.44048 1.52551 1.88352 2.44788 2.46210 2.71673 3.21396 3.25609 3.64406 3.78181 3.80549 3.83992 4.24152 4.27612 4.31707 4.38427 4.43926 4.47959 4.61820 4.63753 4.65683 4.70648 4.77384 4.81362 4.82731 4.91388 4.97299 5.08392 5.10292 5.15133 5.25966 5.28731 5.30921 5.33405 5.47757 5.57520 5.62012 5.73130 5.90330 6.04113 6.09664 6.43160 6.94152 7.49777 8.98636 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.003492 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.623841 B = 8017.385646 C = 8314.940224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.153 4.153 4 C -0.032 4.032 5 C -0.696 4.696 6 S 2.698 3.302 7 O -0.988 6.988 8 O -0.984 6.984 9 N -0.990 5.990 10 C 0.123 3.877 11 C -0.112 4.112 12 C 0.047 3.953 13 C -0.534 4.534 14 H 0.047 0.953 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.117 4.117 22 C 0.125 3.875 23 C 0.017 3.983 24 C -0.185 4.185 25 C -0.153 4.153 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.849 6.486 8.273 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 C -0.172 4.172 4 C -0.051 4.051 5 C -0.786 4.786 6 S 2.794 3.206 7 O -0.978 6.978 8 O -0.975 6.975 9 N -0.829 5.829 10 C -0.001 4.001 11 C -0.152 4.152 12 C 0.028 3.972 13 C -0.572 4.572 14 H 0.065 0.935 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.156 4.156 22 C 0.000 4.000 23 C 0.015 3.985 24 C -0.241 4.241 25 C -0.171 4.171 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.295 6.625 8.886 22.252 hybrid contribution 0.865 -0.480 -0.663 1.190 sum -18.431 6.145 8.223 21.097 Atomic orbital electron populations 1.21008 0.87993 1.04624 1.04000 1.20685 0.98264 0.92668 0.91256 1.21479 0.93280 0.99502 1.02934 1.21148 0.95879 0.96246 0.91833 1.30495 1.25447 1.00313 1.22359 1.01381 0.74575 0.72207 0.72418 1.93486 1.82237 1.35497 1.86585 1.93476 1.82377 1.66664 1.54936 1.57414 1.81139 1.19344 1.25006 1.21688 0.97400 0.79147 1.01899 1.21684 0.94268 1.01709 0.97563 1.18572 0.95104 0.91013 0.92464 1.21582 1.02416 0.92936 1.40309 0.93469 1.25614 1.00476 0.96170 0.95821 1.70019 1.35884 0.99957 1.49319 0.85760 0.81434 0.77779 0.77954 1.20608 1.20882 1.19621 1.21867 0.95427 0.98538 0.99803 1.21549 0.98230 0.95011 0.85171 1.19746 0.95190 0.93209 0.90349 1.21926 1.02484 0.94674 1.04999 1.21399 0.92721 0.99597 1.03434 0.89150 0.89656 0.89910 0.82400 0.83838 0.88961 0.90312 0.91860 0.95421 0.96844 0.93033 0.91351 0.93909 0.90137 0.88832 0.88487 0.89489 0.87602 0.82808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.03 -0.47 5.88 -19.86 -0.12 -0.59 16 3 C -0.15 -2.79 9.70 22.27 0.22 -2.58 16 4 C -0.03 -0.76 9.55 22.27 0.21 -0.54 16 5 C -0.70 -19.15 5.90 22.27 0.13 -19.02 16 6 S 2.70 89.71 5.10 -56.49 -0.29 89.43 16 7 O -0.99 -36.33 15.74 -128.00 -2.02 -38.34 16 8 O -0.98 -36.70 14.18 -128.00 -1.82 -38.52 16 9 N -0.99 -33.52 3.23 -513.83 -1.66 -35.18 16 10 C 0.12 4.42 4.51 86.22 0.39 4.81 16 11 C -0.11 -5.13 5.19 30.53 0.16 -4.97 16 12 C 0.05 2.27 1.93 -11.51 -0.02 2.25 16 13 C -0.53 -29.12 8.49 25.60 0.22 -28.91 16 14 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 15 C 0.02 1.00 5.24 84.65 0.44 1.44 16 16 N -0.91 -51.28 12.00 21.44 0.26 -51.02 16 17 Si 0.94 43.56 29.54 68.60 2.03 45.58 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 C -0.12 -4.73 5.30 30.67 0.16 -4.57 16 22 C 0.13 4.13 6.46 86.36 0.56 4.68 16 23 C 0.02 0.40 5.88 -19.86 -0.12 0.29 16 24 C -0.18 -4.32 8.14 71.24 0.58 -3.74 16 25 C -0.15 -2.93 9.34 22.27 0.21 -2.72 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.14 3.24 7.34 -2.91 -0.02 3.22 16 31 H 0.09 3.10 5.48 -2.39 -0.01 3.09 16 32 H 0.08 2.59 6.89 -2.38 -0.02 2.57 16 33 H 0.06 3.19 6.74 -2.38 -0.02 3.17 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.01 0.70 8.11 -2.39 -0.02 0.68 16 36 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 2.76 7.07 -2.39 -0.02 2.74 16 41 H 0.10 2.20 5.87 -2.39 -0.01 2.19 16 42 H 0.09 2.41 4.01 -2.39 -0.01 2.40 16 43 H 0.11 1.87 8.05 -2.39 -0.02 1.85 16 44 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -68.21 351.24 1.24 -66.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.00 Total: 15.62 kcal Atomic # 6 Polarization: -58.28 SS G_CDS: 3.73 Total: -54.54 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.40 Total: -86.20 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -3.83 Total: -76.86 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 89.71 SS G_CDS: -0.29 Total: 89.43 kcal Total: -68.21 1.24 -66.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336572237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.093 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds