Wall clock time and date at job start Tue Mar 31 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 120.00068 * 2 1 4 4 C 1.38216 * 119.99755 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00473 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00134 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47054 * 90.00178 * 7 6 5 9 9 O 1.42100 * 110.54409 * 291.62542 * 8 7 6 10 10 O 1.42103 * 110.54456 * 68.37321 * 8 7 6 11 11 N 1.65601 * 104.44938 * 179.97438 * 8 7 6 12 12 C 1.46918 * 120.63178 * 269.71961 * 11 8 7 13 13 C 1.53619 * 108.54745 * 126.37000 * 12 11 8 14 14 C 1.53045 * 109.24050 * 54.85257 * 13 12 11 15 15 C 1.50701 * 109.44618 * 178.50019 * 14 13 12 16 16 H 1.08008 * 119.99829 * 120.06512 * 15 14 13 17 17 C 1.37874 * 120.00403 * 300.06242 * 15 14 13 18 18 N 1.31515 * 120.00273 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99736 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46815 * 89.99907 * 19 17 15 21 21 H 1.48496 * 109.47078 * 209.99625 * 19 17 15 22 22 H 1.48494 * 109.47155 * 330.00073 * 19 17 15 23 23 C 1.53039 * 109.54165 * 298.51522 * 14 13 12 24 24 C 1.46925 * 120.63067 * 90.00259 * 11 8 7 25 25 C 1.38214 * 119.99951 * 180.27804 * 2 1 3 26 26 H 1.09000 * 109.47000 * 89.99464 * 1 2 3 27 27 H 1.08997 * 109.47362 * 209.99787 * 1 2 3 28 28 H 1.08997 * 109.46853 * 330.00063 * 1 2 3 29 29 H 1.07999 * 120.00480 * 0.02562 * 3 2 1 30 30 H 1.08006 * 120.00197 * 180.02562 * 4 3 2 31 31 H 1.07993 * 120.00641 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47247 * 330.00207 * 7 6 5 33 33 H 1.09001 * 109.47358 * 209.99633 * 7 6 5 34 34 H 1.09008 * 109.58618 * 246.20363 * 12 11 8 35 35 H 1.08998 * 109.58892 * 6.62441 * 12 11 8 36 36 H 1.09006 * 109.63040 * 294.86839 * 13 12 11 37 37 H 1.08995 * 109.43682 * 174.72645 * 13 12 11 38 38 H 1.08997 * 109.45457 * 58.53925 * 14 13 12 39 39 H 0.96994 * 119.99981 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49826 * 301.41650 * 23 14 13 41 41 H 1.08994 * 109.52678 * 181.33290 * 23 14 13 42 42 H 1.09009 * 109.58762 * 353.36712 * 24 11 8 43 43 H 1.09002 * 109.59145 * 113.65367 * 24 11 8 44 44 H 1.08002 * 119.99741 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 4.3341 -2.5022 0.0000 8 16 4.6370 -3.0262 1.7100 9 8 5.5604 -2.1515 2.3435 10 8 3.4179 -3.3884 2.3440 11 7 5.4611 -4.4552 1.5644 12 6 4.7388 -5.7332 1.5052 13 6 5.1927 -6.4933 0.2497 14 6 6.7166 -6.6333 0.2682 15 6 7.1638 -7.4104 -0.9430 16 1 7.8382 -6.9589 -1.6556 17 6 6.7121 -8.6979 -1.1415 18 7 7.1028 -9.3763 -2.1983 19 14 5.5451 -9.4786 0.0906 20 1 4.1429 -9.1906 -0.3046 21 1 5.7609 -10.9476 0.1146 22 1 5.8037 -8.9181 1.4412 23 6 7.3585 -5.2441 0.2483 24 6 6.9288 -4.4696 1.4982 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0005 32 1 5.2863 -2.3718 -0.5142 33 1 3.7448 -3.2617 -0.5138 34 1 4.9650 -6.3223 2.3941 35 1 3.6665 -5.5449 1.4523 36 1 4.8886 -5.9436 -0.6411 37 1 4.7365 -7.4832 0.2403 38 1 7.0217 -7.1614 1.1716 39 1 6.7847 -10.2818 -2.3381 40 1 7.0340 -4.7062 -0.6425 41 1 8.4437 -5.3444 0.2376 42 1 7.3020 -3.4470 1.4406 43 1 7.3300 -4.9554 2.3876 44 1 1.6580 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336592690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:48 Heat of formation + Delta-G solvation = -53.658886 kcal Electronic energy + Delta-G solvation = -25724.584960 eV Core-core repulsion = 22154.490662 eV Total energy + Delta-G solvation = -3570.094298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70131 -38.09539 -37.09206 -35.87030 -33.93807 -33.46867 -32.28173 -31.28714 -30.61272 -27.91705 -27.01949 -25.98579 -22.95823 -22.50105 -22.19598 -21.14320 -19.63838 -18.57036 -17.58231 -16.88105 -16.75855 -16.25697 -16.18231 -15.51260 -15.14914 -14.77002 -14.27197 -14.04539 -13.80032 -13.59731 -13.33049 -13.23894 -13.20682 -12.96011 -12.84352 -12.50760 -12.47017 -12.36229 -12.24956 -12.01724 -11.67047 -11.52622 -11.35453 -11.26761 -11.09679 -10.99384 -10.77708 -10.24561 -10.06484 -9.80114 -9.47760 -9.15536 -9.03271 -8.84518 -8.59826 -8.47477 -6.12740 -4.12318 0.16242 1.11120 1.14916 2.72635 3.20974 3.33268 3.35504 3.46141 3.83013 4.10950 4.23620 4.35182 4.52794 4.63162 4.86332 4.90063 4.92266 5.04877 5.17053 5.19792 5.32469 5.35203 5.42374 5.47966 5.56134 5.67436 5.72265 5.78479 5.87267 5.87966 5.91332 6.06294 6.14754 6.18354 6.24048 6.31148 6.31463 6.58445 6.63837 6.71846 6.82709 6.89428 7.15692 7.44843 7.70357 8.46120 8.91203 9.49648 11.00494 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.003494 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.458901 B = 8012.087674 C = 8299.454899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.083 4.083 7 C -0.590 4.590 8 S 2.607 3.393 9 O -0.954 6.954 10 O -0.954 6.954 11 N -0.992 5.992 12 C 0.116 3.884 13 C -0.137 4.137 14 C 0.016 3.984 15 C -0.514 4.514 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.263 1.263 23 C -0.115 4.115 24 C 0.117 3.883 25 C -0.107 4.107 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 18.726 4.718 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.717 4.717 8 S 2.700 3.300 9 O -0.944 6.944 10 O -0.945 6.945 11 N -0.830 5.830 12 C -0.009 4.009 13 C -0.176 4.176 14 C -0.003 4.003 15 C -0.552 4.552 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.188 1.188 23 C -0.154 4.154 24 C -0.008 4.008 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.799 18.937 5.439 22.004 hybrid contribution -0.525 -0.819 -0.387 1.047 sum -10.323 18.118 5.052 21.456 Atomic orbital electron populations 1.20822 0.90781 1.03150 1.02529 1.19934 0.96402 0.92864 0.99340 1.21130 0.94322 0.97623 1.00381 1.21153 0.94304 0.97971 0.99766 1.21185 1.00517 0.91775 0.99625 1.19012 0.93609 0.92470 1.03389 1.29785 1.09985 1.04122 1.27785 1.05196 0.74065 0.73441 0.77251 1.93563 1.62943 1.65850 1.72080 1.93565 1.46729 1.82092 1.72077 1.57639 1.15613 1.20653 1.89117 1.21702 0.95142 0.83823 1.00262 1.22486 1.00663 0.98756 0.95689 1.19089 0.90159 0.92824 0.98238 1.21053 1.28909 0.98129 1.07116 0.90864 1.25044 0.96135 0.97086 0.95059 1.69896 1.44952 1.11466 1.27600 0.86897 0.81180 0.77685 0.82801 1.20497 1.22497 1.18828 1.21858 1.00654 0.97454 0.95435 1.21622 0.77701 1.01186 1.00251 1.21085 0.93108 0.98550 0.99877 0.90960 0.91129 0.91356 0.85714 0.85400 0.85150 0.83848 0.83891 0.91254 0.90211 0.91715 0.92437 0.95231 0.92650 0.92371 0.91239 0.90163 0.91186 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 6 C -0.08 -1.02 5.14 -104.62 -0.54 -1.56 16 7 C -0.59 -7.02 6.31 36.01 0.23 -6.80 16 8 S 2.61 38.72 5.40 -107.50 -0.58 38.14 16 9 O -0.95 -15.95 16.73 -57.54 -0.96 -16.91 16 10 O -0.95 -16.32 16.71 -57.54 -0.96 -17.28 16 11 N -0.99 -15.45 3.21 -113.27 -0.36 -15.81 16 12 C 0.12 1.92 6.34 -3.49 -0.02 1.90 16 13 C -0.14 -2.68 4.86 -26.39 -0.13 -2.81 16 14 C 0.02 0.34 1.65 -91.73 -0.15 0.19 16 15 C -0.51 -13.60 9.14 -34.44 -0.31 -13.91 16 16 H 0.07 2.10 7.99 -52.48 -0.42 1.69 16 17 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 18 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 19 Si 0.88 20.98 24.38 -169.99 -4.14 16.84 16 20 H -0.28 -6.36 6.86 56.52 0.39 -5.98 16 21 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.26 -5.91 6.53 56.52 0.37 -5.54 16 23 C -0.12 -2.02 5.30 -26.61 -0.14 -2.17 16 24 C 0.12 1.79 6.31 -3.71 -0.02 1.76 16 25 C -0.11 -1.26 9.36 -39.58 -0.37 -1.63 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.46 8.09 -51.92 -0.42 1.04 16 33 H 0.14 1.52 8.08 -51.92 -0.42 1.10 16 34 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 35 H 0.08 1.19 7.09 -51.93 -0.37 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.21 3.24 -51.93 -0.17 1.04 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.07 7.10 -51.92 -0.37 0.70 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -33.17 360.44 -10.57 -43.74 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.79 Total: 1.74 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -2.98 Total: -29.87 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.41 Total: -41.83 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.92 Total: -34.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 16 Polarization: 38.72 SS G_CDS: -0.58 Total: 38.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.17 -10.57 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336592690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.918 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds