Wall clock time and date at job start Tue Mar 31 2020 14:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38251 * 120.00068 * 2 1 4 4 C 1.38216 * 119.99755 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00473 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.99774 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00134 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47054 * 90.00178 * 7 6 5 9 9 O 1.42100 * 110.54409 * 291.62542 * 8 7 6 10 10 O 1.42103 * 110.54456 * 68.37321 * 8 7 6 11 11 N 1.65601 * 104.44938 * 179.97438 * 8 7 6 12 12 C 1.46918 * 120.63178 * 269.71961 * 11 8 7 13 13 C 1.53619 * 108.54745 * 126.37000 * 12 11 8 14 14 C 1.53045 * 109.24050 * 54.85257 * 13 12 11 15 15 C 1.50701 * 109.44618 * 178.50019 * 14 13 12 16 16 H 1.08008 * 119.99829 * 120.06512 * 15 14 13 17 17 C 1.37874 * 120.00403 * 300.06242 * 15 14 13 18 18 N 1.31515 * 120.00273 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99736 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46815 * 89.99907 * 19 17 15 21 21 H 1.48496 * 109.47078 * 209.99625 * 19 17 15 22 22 H 1.48494 * 109.47155 * 330.00073 * 19 17 15 23 23 C 1.53039 * 109.54165 * 298.51522 * 14 13 12 24 24 C 1.46925 * 120.63067 * 90.00259 * 11 8 7 25 25 C 1.38214 * 119.99951 * 180.27804 * 2 1 3 26 26 H 1.09000 * 109.47000 * 89.99464 * 1 2 3 27 27 H 1.08997 * 109.47362 * 209.99787 * 1 2 3 28 28 H 1.08997 * 109.46853 * 330.00063 * 1 2 3 29 29 H 1.07999 * 120.00480 * 0.02562 * 3 2 1 30 30 H 1.08006 * 120.00197 * 180.02562 * 4 3 2 31 31 H 1.07993 * 120.00641 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47247 * 330.00207 * 7 6 5 33 33 H 1.09001 * 109.47358 * 209.99633 * 7 6 5 34 34 H 1.09008 * 109.58618 * 246.20363 * 12 11 8 35 35 H 1.08998 * 109.58892 * 6.62441 * 12 11 8 36 36 H 1.09006 * 109.63040 * 294.86839 * 13 12 11 37 37 H 1.08995 * 109.43682 * 174.72645 * 13 12 11 38 38 H 1.08997 * 109.45457 * 58.53925 * 14 13 12 39 39 H 0.96994 * 119.99981 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49826 * 301.41650 * 23 14 13 41 41 H 1.08994 * 109.52678 * 181.33290 * 23 14 13 42 42 H 1.09009 * 109.58762 * 353.36712 * 24 11 8 43 43 H 1.09002 * 109.59145 * 113.65367 * 24 11 8 44 44 H 1.08002 * 119.99741 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 4.3341 -2.5022 0.0000 8 16 4.6370 -3.0262 1.7100 9 8 5.5604 -2.1515 2.3435 10 8 3.4179 -3.3884 2.3440 11 7 5.4611 -4.4552 1.5644 12 6 4.7388 -5.7332 1.5052 13 6 5.1927 -6.4933 0.2497 14 6 6.7166 -6.6333 0.2682 15 6 7.1638 -7.4104 -0.9430 16 1 7.8382 -6.9589 -1.6556 17 6 6.7121 -8.6979 -1.1415 18 7 7.1028 -9.3763 -2.1983 19 14 5.5451 -9.4786 0.0906 20 1 4.1429 -9.1906 -0.3046 21 1 5.7609 -10.9476 0.1146 22 1 5.8037 -8.9181 1.4412 23 6 7.3585 -5.2441 0.2483 24 6 6.9288 -4.4696 1.4982 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0005 32 1 5.2863 -2.3718 -0.5142 33 1 3.7448 -3.2617 -0.5138 34 1 4.9650 -6.3223 2.3941 35 1 3.6665 -5.5449 1.4523 36 1 4.8886 -5.9436 -0.6411 37 1 4.7365 -7.4832 0.2403 38 1 7.0217 -7.1614 1.1716 39 1 6.7847 -10.2818 -2.3381 40 1 7.0340 -4.7062 -0.6425 41 1 8.4437 -5.3444 0.2376 42 1 7.3020 -3.4470 1.4406 43 1 7.3300 -4.9554 2.3876 44 1 1.6580 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336592690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:47 Heat of formation + Delta-G solvation = -74.992986 kcal Electronic energy + Delta-G solvation = -25725.510076 eV Core-core repulsion = 22154.490662 eV Total energy + Delta-G solvation = -3571.019414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.45106 -39.51475 -38.31272 -37.09325 -35.26195 -34.70786 -33.09386 -33.01377 -31.98549 -28.74403 -27.79036 -27.67379 -24.36614 -23.85243 -23.19193 -22.00331 -21.03859 -19.82164 -18.94193 -18.65907 -17.75736 -17.28007 -17.21689 -16.64770 -16.42251 -15.86633 -15.55731 -15.32830 -14.88804 -14.78567 -14.63219 -14.46595 -14.28054 -14.13531 -14.00073 -13.79378 -13.66421 -13.27383 -13.23778 -13.08348 -12.97953 -12.81066 -12.73318 -12.29435 -12.23876 -12.09165 -11.99337 -11.95917 -11.70957 -11.45781 -11.07478 -10.95042 -10.62704 -10.00269 -9.77045 -9.55650 -8.26286 -6.29373 -0.94125 0.33011 0.36327 1.32461 1.39756 1.48458 1.57570 2.35452 2.64765 2.80314 3.02974 3.09685 3.31547 3.68016 3.70414 3.96355 4.07076 4.14949 4.17499 4.25185 4.32429 4.39141 4.45518 4.48908 4.52742 4.58325 4.68982 4.74299 4.79707 4.82406 4.91112 4.94723 5.03563 5.04873 5.17970 5.26084 5.40762 5.42560 5.45584 5.46338 5.58847 5.66262 5.72492 5.80143 5.99414 6.35567 6.78897 7.36507 8.90417 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.003494 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.458901 B = 8012.087674 C = 8299.454899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.107 4.107 7 C -0.573 4.573 8 S 2.612 3.388 9 O -0.976 6.976 10 O -0.981 6.981 11 N -0.995 5.995 12 C 0.119 3.881 13 C -0.136 4.136 14 C 0.012 3.988 15 C -0.513 4.513 16 H 0.035 0.965 17 C 0.009 3.991 18 N -0.953 5.953 19 Si 0.943 3.057 20 H -0.262 1.262 21 H -0.306 1.306 22 H -0.242 1.242 23 C -0.111 4.111 24 C 0.121 3.879 25 C -0.129 4.129 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 20.922 5.807 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.109 4.109 7 C -0.703 4.703 8 S 2.710 3.290 9 O -0.967 6.967 10 O -0.971 6.971 11 N -0.833 5.833 12 C -0.006 4.006 13 C -0.175 4.175 14 C -0.007 4.007 15 C -0.551 4.551 16 H 0.053 0.947 17 C -0.188 4.188 18 N -0.594 5.594 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.234 1.234 22 H -0.165 1.165 23 C -0.150 4.150 24 C -0.004 4.004 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.422 21.143 6.582 24.916 hybrid contribution 0.023 -1.362 -0.832 1.596 sum -11.399 19.780 5.751 23.543 Atomic orbital electron populations 1.20884 0.89078 1.03893 1.03423 1.20316 0.97856 0.92740 0.98646 1.21535 0.94470 0.98528 0.99019 1.21536 0.94818 0.98535 0.98770 1.21472 1.01276 0.92181 1.00018 1.19161 0.94048 0.92726 1.04935 1.29595 1.11337 1.04653 1.24668 1.04970 0.73120 0.72762 0.78195 1.93528 1.63434 1.66047 1.73660 1.93524 1.47439 1.82386 1.73770 1.57610 1.15653 1.20568 1.89440 1.21633 0.96312 0.84010 0.98661 1.22368 0.98650 0.98760 0.97689 1.19085 0.92106 0.94231 0.95310 1.21418 1.27385 0.98437 1.07837 0.94693 1.25892 0.98120 0.97873 0.96866 1.70056 1.47256 1.11978 1.30119 0.85939 0.79664 0.76022 0.81399 1.18844 1.23428 1.16539 1.21772 1.00389 0.95652 0.97156 1.21614 0.77708 1.02128 0.98965 1.21329 0.93280 0.99511 1.00702 0.89905 0.91278 0.89777 0.82939 0.82882 0.84283 0.82087 0.82592 0.90835 0.88310 0.91239 0.93649 0.95697 0.92794 0.91941 0.91354 0.87903 0.90596 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 4 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 5 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 6 C -0.11 -2.44 5.14 -19.86 -0.10 -2.55 16 7 C -0.57 -12.47 6.31 71.24 0.45 -12.02 16 8 S 2.61 72.75 5.40 -56.49 -0.30 72.44 16 9 O -0.98 -30.98 16.73 -127.65 -2.14 -33.11 16 10 O -0.98 -32.06 16.71 -127.65 -2.13 -34.20 16 11 N -1.00 -28.77 3.21 -512.29 -1.65 -30.42 16 12 C 0.12 3.66 6.34 86.51 0.55 4.21 16 13 C -0.14 -5.06 4.86 30.82 0.15 -4.91 16 14 C 0.01 0.49 1.65 -11.51 -0.02 0.47 16 15 C -0.51 -27.63 9.14 25.60 0.23 -27.39 16 16 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 17 C 0.01 0.50 5.45 84.65 0.46 0.96 16 18 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 19 Si 0.94 43.18 24.38 68.60 1.67 44.85 16 20 H -0.26 -11.29 6.86 99.48 0.68 -10.60 16 21 H -0.31 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.24 -10.11 6.53 99.48 0.65 -9.46 16 23 C -0.11 -3.77 5.30 30.67 0.16 -3.60 16 24 C 0.12 3.41 6.31 86.36 0.55 3.95 16 25 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 28 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.16 2.89 8.09 -2.39 -0.02 2.88 16 33 H 0.16 2.97 8.08 -2.39 -0.02 2.95 16 34 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.10 2.68 7.09 -2.39 -0.02 2.67 16 36 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.05 1.80 3.24 -2.39 -0.01 1.80 16 38 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.10 2.47 7.10 -2.38 -0.02 2.46 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -72.84 360.44 0.54 -72.30 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.90 Total: 18.47 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 3.89 Total: -52.10 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -1.35 Total: -88.65 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -4.27 Total: -67.31 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Atomic # 16 Polarization: 72.75 SS G_CDS: -0.30 Total: 72.44 kcal Total: -72.84 0.54 -72.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336592690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.696 kcal (2) G-P(sol) polarization free energy of solvation -72.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds