Wall clock time and date at job start Tue Mar 31 2020 13:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 120.00127 * 2 1 4 4 C 1.38235 * 119.99726 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00085 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99714 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47175 * 89.99618 * 6 5 4 8 8 S 1.81405 * 109.47155 * 179.97438 * 7 6 5 9 9 O 1.42088 * 110.54238 * 291.62641 * 8 7 6 10 10 O 1.42107 * 110.54018 * 68.37243 * 8 7 6 11 11 N 1.65594 * 104.44956 * 179.97438 * 8 7 6 12 12 C 1.46503 * 120.00319 * 65.00129 * 11 8 7 13 13 C 1.52999 * 109.47485 * 164.42787 * 12 11 8 14 14 C 1.50701 * 115.54727 * 65.12147 * 13 12 11 15 15 H 1.08005 * 120.00124 * 264.73313 * 14 13 12 16 16 C 1.37872 * 120.00211 * 84.73498 * 14 13 12 17 17 N 1.31516 * 119.99779 * 352.54388 * 16 14 13 18 18 Si 1.86800 * 120.00210 * 172.54064 * 16 14 13 19 19 H 1.48495 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47034 * 120.00033 * 18 16 14 21 21 H 1.48496 * 109.47456 * 239.99934 * 18 16 14 22 22 C 1.52998 * 117.49809 * 279.45257 * 13 12 11 23 23 C 1.52994 * 117.49892 * 210.79173 * 13 12 11 24 24 C 1.38231 * 119.99883 * 0.24276 * 5 4 3 25 25 C 1.38233 * 120.00122 * 359.47711 * 24 5 4 26 26 H 1.09003 * 109.47245 * 89.99509 * 1 2 3 27 27 H 1.08998 * 109.47086 * 209.99743 * 1 2 3 28 28 H 1.08999 * 109.47001 * 329.99672 * 1 2 3 29 29 H 1.07992 * 119.99985 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.99936 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47034 * 209.99679 * 6 5 4 32 32 H 1.09001 * 109.47135 * 329.99335 * 6 5 4 33 33 H 1.09008 * 109.46983 * 299.99723 * 7 6 5 34 34 H 1.08992 * 109.47374 * 59.99835 * 7 6 5 35 35 H 0.97006 * 119.99868 * 245.00325 * 11 8 7 36 36 H 1.08999 * 109.46565 * 284.43418 * 12 11 8 37 37 H 1.09001 * 109.46482 * 44.43017 * 12 11 8 38 38 H 0.97005 * 119.99984 * 185.01588 * 17 16 14 39 39 H 1.09000 * 117.49999 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50011 * 145.02216 * 22 13 12 41 41 H 1.09004 * 117.50197 * 214.97795 * 23 13 12 42 42 H 1.09001 * 117.50078 * 359.97438 * 23 13 12 43 43 H 1.08007 * 119.99486 * 179.73468 * 24 5 4 44 44 H 1.07997 * 119.99792 * 180.27381 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2716 -0.0002 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2887 -0.0001 1.4430 8 16 8.1027 -0.0009 1.4430 9 8 8.6008 -1.2380 0.9529 10 8 8.6019 1.2359 0.9522 11 7 8.5159 0.0000 3.0465 12 6 8.1790 -1.1491 3.8905 13 6 8.9864 -1.0829 5.1884 14 6 8.6724 0.0829 6.0904 15 1 9.2693 0.9815 6.0391 16 6 7.6231 0.0023 6.9811 17 7 6.8069 -1.0283 6.9442 18 14 7.3608 1.3568 8.2405 19 1 8.4077 2.3967 8.0743 20 1 6.0217 1.9667 8.0398 21 1 7.4439 0.7841 9.6080 22 6 10.4354 -1.5721 5.1448 23 6 9.3660 -2.4078 5.8527 24 6 3.5804 -1.1972 -0.0051 25 6 2.1981 -1.1972 0.0002 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 6.1420 -0.8902 -0.5132 32 1 6.1420 0.8898 -0.5134 33 1 5.9253 0.8900 1.9568 34 1 5.9254 -0.8899 1.9569 35 1 8.9811 0.7615 3.4271 36 1 7.1144 -1.1291 4.1233 37 1 8.4179 -2.0713 3.3607 38 1 6.0272 -1.0505 7.5209 39 1 10.8134 -1.9415 4.1915 40 1 11.1615 -1.0511 5.7688 41 1 9.3891 -2.4363 6.9421 42 1 9.0402 -3.3267 5.3652 43 1 4.1205 -2.1326 -0.0094 44 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337163692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:50 Heat of formation + Delta-G solvation = -42.575882 kcal Electronic energy + Delta-G solvation = -24805.634510 eV Core-core repulsion = 21236.020808 eV Total energy + Delta-G solvation = -3569.613702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.61364 -37.10215 -36.66515 -35.61437 -34.99757 -33.27139 -32.00096 -31.39345 -31.04815 -27.07144 -25.97634 -24.90523 -23.54821 -22.85783 -21.13904 -20.78013 -19.44904 -18.79914 -17.24589 -16.63090 -16.12799 -16.01038 -15.80554 -15.40789 -15.14136 -14.71831 -14.36308 -13.99515 -13.96593 -13.59430 -13.48961 -13.15863 -12.98844 -12.83245 -12.47226 -12.39144 -12.04664 -11.84031 -11.77914 -11.65682 -11.50405 -11.44391 -11.33220 -11.06001 -11.01152 -10.98729 -10.53940 -10.42153 -10.23673 -9.59618 -9.05096 -9.04149 -8.68546 -8.58452 -8.45753 -8.18805 -6.13400 -4.20192 0.60650 1.19623 1.28726 3.18795 3.21410 3.31201 3.34804 3.58381 4.08985 4.32064 4.45602 4.57330 4.64609 4.76460 4.82942 4.88886 4.89783 5.14651 5.17473 5.29731 5.31426 5.36767 5.37561 5.47119 5.61185 5.62968 5.84017 5.89974 5.95519 5.97027 6.24994 6.28328 6.34081 6.39844 6.45625 6.49414 6.55357 6.75204 6.88548 7.00379 7.06242 7.37581 7.50238 7.75887 7.79520 8.33261 8.81847 9.46564 10.94635 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003649 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.618216 B = 7671.006090 C = 9066.933644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.077 4.077 6 C -0.071 4.071 7 C -0.629 4.629 8 S 2.611 3.389 9 O -0.964 6.964 10 O -0.971 6.971 11 N -1.098 6.098 12 C 0.157 3.843 13 C 0.036 3.964 14 C -0.497 4.497 15 H 0.062 0.938 16 C 0.074 3.926 17 N -0.877 5.877 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.208 4.208 23 C -0.153 4.153 24 C -0.111 4.111 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.420 0.580 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 1.048 -13.325 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.110 4.110 7 C -0.757 4.757 8 S 2.703 3.297 9 O -0.954 6.954 10 O -0.962 6.962 11 N -0.859 5.859 12 C 0.031 3.969 13 C 0.034 3.966 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.514 5.514 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.245 4.245 23 C -0.191 4.191 24 C -0.129 4.129 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.256 0.744 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.396 0.773 -13.986 16.867 hybrid contribution -0.801 0.954 1.484 1.938 sum -10.197 1.727 -12.502 16.225 Atomic orbital electron populations 1.20784 0.91307 1.02808 1.02143 1.19934 0.96057 0.93296 1.00003 1.21011 0.94099 0.97538 1.01061 1.21080 0.94234 0.97688 0.99970 1.19632 0.94527 0.93473 1.00207 1.20296 0.93160 1.04225 0.93272 1.30720 1.28346 1.12449 1.04187 1.04780 0.77196 0.74088 0.73651 1.93569 1.76737 1.45660 1.79432 1.93560 1.77885 1.45270 1.79437 1.55200 1.73085 1.29363 1.28248 1.20936 1.00195 0.84624 0.91169 1.18896 0.90311 0.94720 0.92671 1.20432 1.15328 0.99491 1.18172 0.92011 1.24973 0.95901 0.95390 0.96750 1.69975 1.13096 1.29253 1.39046 0.86600 0.78041 0.82068 0.81683 1.19635 1.21087 1.20940 1.23017 0.94101 1.06720 1.00709 1.22548 1.02968 0.94603 0.99008 1.21094 0.94246 0.97727 0.99811 1.21022 0.94109 0.97557 1.00938 0.91315 0.91549 0.91592 0.86088 0.85789 0.89492 0.89540 0.84668 0.84702 0.74396 0.91375 0.93307 0.92952 0.91322 0.90377 0.89925 0.91628 0.85712 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 6 C -0.07 -0.82 5.35 -27.88 -0.15 -0.97 16 7 C -0.63 -8.15 6.05 37.16 0.22 -7.92 16 8 S 2.61 41.74 5.46 -107.50 -0.59 41.16 16 9 O -0.96 -17.90 17.49 -57.54 -1.01 -18.91 16 10 O -0.97 -17.51 18.08 -57.54 -1.04 -18.55 16 11 N -1.10 -19.89 5.84 -10.61 -0.06 -19.96 16 12 C 0.16 3.21 5.96 -4.04 -0.02 3.19 16 13 C 0.04 0.83 1.43 -155.66 -0.22 0.60 16 14 C -0.50 -12.50 8.47 -34.44 -0.29 -12.79 16 15 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 16 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 17 N -0.88 -23.19 12.97 55.43 0.72 -22.47 16 18 Si 0.89 20.09 29.55 -169.99 -5.02 15.07 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 23 C -0.15 -3.41 9.48 -26.70 -0.25 -3.67 16 24 C -0.11 -1.25 9.70 -39.59 -0.38 -1.64 16 25 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 34 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.42 7.65 8.34 -34.47 -0.29 7.36 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.05 0.96 7.64 -51.93 -0.40 0.56 16 38 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -31.18 384.46 -11.59 -42.77 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.98 Total: 9.57 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: -3.41 Total: -34.47 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.66 Total: -42.43 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -2.05 Total: -37.46 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 41.74 SS G_CDS: -0.59 Total: 41.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.18 -11.59 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337163692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.194 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds