Wall clock time and date at job start Tue Mar 31 2020 13:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 120.00127 * 2 1 4 4 C 1.38235 * 119.99726 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00085 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99714 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47175 * 89.99618 * 6 5 4 8 8 S 1.81405 * 109.47155 * 179.97438 * 7 6 5 9 9 O 1.42088 * 110.54238 * 291.62641 * 8 7 6 10 10 O 1.42107 * 110.54018 * 68.37243 * 8 7 6 11 11 N 1.65594 * 104.44956 * 179.97438 * 8 7 6 12 12 C 1.46503 * 120.00319 * 65.00129 * 11 8 7 13 13 C 1.52999 * 109.47485 * 164.42787 * 12 11 8 14 14 C 1.50701 * 115.54727 * 65.12147 * 13 12 11 15 15 H 1.08005 * 120.00124 * 264.73313 * 14 13 12 16 16 C 1.37872 * 120.00211 * 84.73498 * 14 13 12 17 17 N 1.31516 * 119.99779 * 352.54388 * 16 14 13 18 18 Si 1.86800 * 120.00210 * 172.54064 * 16 14 13 19 19 H 1.48495 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47034 * 120.00033 * 18 16 14 21 21 H 1.48496 * 109.47456 * 239.99934 * 18 16 14 22 22 C 1.52998 * 117.49809 * 279.45257 * 13 12 11 23 23 C 1.52994 * 117.49892 * 210.79173 * 13 12 11 24 24 C 1.38231 * 119.99883 * 0.24276 * 5 4 3 25 25 C 1.38233 * 120.00122 * 359.47711 * 24 5 4 26 26 H 1.09003 * 109.47245 * 89.99509 * 1 2 3 27 27 H 1.08998 * 109.47086 * 209.99743 * 1 2 3 28 28 H 1.08999 * 109.47001 * 329.99672 * 1 2 3 29 29 H 1.07992 * 119.99985 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.99936 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47034 * 209.99679 * 6 5 4 32 32 H 1.09001 * 109.47135 * 329.99335 * 6 5 4 33 33 H 1.09008 * 109.46983 * 299.99723 * 7 6 5 34 34 H 1.08992 * 109.47374 * 59.99835 * 7 6 5 35 35 H 0.97006 * 119.99868 * 245.00325 * 11 8 7 36 36 H 1.08999 * 109.46565 * 284.43418 * 12 11 8 37 37 H 1.09001 * 109.46482 * 44.43017 * 12 11 8 38 38 H 0.97005 * 119.99984 * 185.01588 * 17 16 14 39 39 H 1.09000 * 117.49999 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50011 * 145.02216 * 22 13 12 41 41 H 1.09004 * 117.50197 * 214.97795 * 23 13 12 42 42 H 1.09001 * 117.50078 * 359.97438 * 23 13 12 43 43 H 1.08007 * 119.99486 * 179.73468 * 24 5 4 44 44 H 1.07997 * 119.99792 * 180.27381 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2716 -0.0002 0.0005 6 6 5.7787 -0.0002 0.0005 7 6 6.2887 -0.0001 1.4430 8 16 8.1027 -0.0009 1.4430 9 8 8.6008 -1.2380 0.9529 10 8 8.6019 1.2359 0.9522 11 7 8.5159 0.0000 3.0465 12 6 8.1790 -1.1491 3.8905 13 6 8.9864 -1.0829 5.1884 14 6 8.6724 0.0829 6.0904 15 1 9.2693 0.9815 6.0391 16 6 7.6231 0.0023 6.9811 17 7 6.8069 -1.0283 6.9442 18 14 7.3608 1.3568 8.2405 19 1 8.4077 2.3967 8.0743 20 1 6.0217 1.9667 8.0398 21 1 7.4439 0.7841 9.6080 22 6 10.4354 -1.5721 5.1448 23 6 9.3660 -2.4078 5.8527 24 6 3.5804 -1.1972 -0.0051 25 6 2.1981 -1.1972 0.0002 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 6.1420 -0.8902 -0.5132 32 1 6.1420 0.8898 -0.5134 33 1 5.9253 0.8900 1.9568 34 1 5.9254 -0.8899 1.9569 35 1 8.9811 0.7615 3.4271 36 1 7.1144 -1.1291 4.1233 37 1 8.4179 -2.0713 3.3607 38 1 6.0272 -1.0505 7.5209 39 1 10.8134 -1.9415 4.1915 40 1 11.1615 -1.0511 5.7688 41 1 9.3891 -2.4363 6.9421 42 1 9.0402 -3.3267 5.3652 43 1 4.1205 -2.1326 -0.0094 44 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337163692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:50 Heat of formation + Delta-G solvation = -60.460973 kcal Electronic energy + Delta-G solvation = -24806.410066 eV Core-core repulsion = 21236.020808 eV Total energy + Delta-G solvation = -3570.389258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39382 -38.79451 -38.08717 -37.00315 -35.86094 -34.82626 -33.91949 -32.21969 -31.82437 -27.87877 -27.80106 -26.61616 -24.43604 -23.63963 -22.88466 -21.59591 -21.20857 -20.14426 -18.57433 -18.23862 -17.41568 -17.17326 -16.82508 -16.59534 -16.52251 -15.95857 -15.84568 -15.40474 -14.84254 -14.68248 -14.52038 -14.26975 -14.15402 -13.90868 -13.84843 -13.72356 -13.20841 -13.10158 -13.07469 -12.96598 -12.92143 -12.84712 -12.62886 -12.37843 -12.31472 -12.26923 -12.00539 -11.78150 -11.56864 -11.36485 -10.82051 -10.46877 -10.14236 -9.93823 -9.83915 -9.40632 -8.07924 -6.18561 -0.67337 0.38424 0.48979 1.41359 1.47247 1.55380 1.83975 2.44583 2.71785 2.88549 3.19614 3.26721 3.53532 3.69074 3.75973 3.83663 4.02109 4.09325 4.15210 4.20894 4.36251 4.45690 4.57201 4.59174 4.64344 4.66714 4.70398 4.83310 4.84811 4.87247 4.88020 4.97810 5.04061 5.19330 5.28779 5.29616 5.35740 5.49573 5.64934 5.67251 5.70175 5.73859 5.81415 6.11963 6.27792 6.43851 6.87231 7.49854 8.99635 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003649 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.618216 B = 7671.006090 C = 9066.933644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.093 4.093 6 C -0.076 4.076 7 C -0.608 4.608 8 S 2.625 3.375 9 O -0.991 6.991 10 O -0.991 6.991 11 N -1.104 6.104 12 C 0.166 3.834 13 C 0.014 3.986 14 C -0.505 4.505 15 H 0.055 0.945 16 C 0.034 3.966 17 N -0.901 5.901 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.286 1.286 22 C -0.192 4.192 23 C -0.158 4.158 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.419 0.581 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 1.512 -13.979 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.739 4.739 8 S 2.721 3.279 9 O -0.981 6.981 10 O -0.982 6.982 11 N -0.863 5.863 12 C 0.040 3.960 13 C 0.012 3.988 14 C -0.543 4.543 15 H 0.074 0.926 16 C -0.167 4.167 17 N -0.538 5.538 18 Si 0.768 3.232 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.213 1.213 22 C -0.229 4.229 23 C -0.197 4.197 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.151 0.849 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.492 1.240 -14.637 18.051 hybrid contribution -0.495 0.814 1.641 1.897 sum -10.987 2.053 -12.996 17.141 Atomic orbital electron populations 1.20831 0.89496 1.03499 1.03104 1.20315 0.97559 0.93128 0.99001 1.21313 0.94075 0.98555 1.00790 1.21331 0.94877 0.98021 1.00005 1.19686 0.94350 0.93984 1.01434 1.20420 0.93503 1.05417 0.92176 1.30507 1.24232 1.13369 1.05837 1.04308 0.78301 0.72932 0.72401 1.93527 1.78431 1.46575 1.79598 1.93530 1.79322 1.45934 1.79411 1.55172 1.73901 1.28722 1.28491 1.20680 0.99122 0.85719 0.90516 1.19050 0.91890 0.94273 0.93608 1.20650 1.15065 0.99957 1.18621 0.92647 1.25530 0.95926 0.97123 0.98111 1.70056 1.13483 1.30512 1.39792 0.85768 0.77887 0.80004 0.79508 1.19426 1.20812 1.21263 1.23006 0.93292 1.05524 1.01082 1.22491 1.04037 0.95151 0.97980 1.21331 0.94907 0.98055 1.00006 1.21313 0.94069 0.98590 1.00780 0.90130 0.90924 0.90872 0.84327 0.84754 0.88551 0.88379 0.83595 0.84096 0.74640 0.92388 0.92566 0.93048 0.89742 0.90334 0.91929 0.90405 0.84924 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.73 16 2 C -0.10 -1.86 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 4 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 5 C -0.09 -2.07 5.13 -19.87 -0.10 -2.17 16 6 C -0.08 -1.66 5.35 29.85 0.16 -1.50 16 7 C -0.61 -14.90 6.05 71.98 0.44 -14.46 16 8 S 2.62 81.80 5.46 -56.49 -0.31 81.50 16 9 O -0.99 -36.09 17.49 -127.65 -2.23 -38.32 16 10 O -0.99 -35.02 18.08 -127.65 -2.31 -37.33 16 11 N -1.10 -39.39 5.84 -187.49 -1.09 -40.48 16 12 C 0.17 6.72 5.96 86.38 0.52 7.23 16 13 C 0.01 0.62 1.43 -52.93 -0.08 0.54 16 14 C -0.51 -25.33 8.47 25.60 0.22 -25.12 16 15 H 0.06 2.78 7.83 -2.91 -0.02 2.76 16 16 C 0.03 1.74 5.38 84.65 0.46 2.20 16 17 N -0.90 -47.58 12.97 21.45 0.28 -47.30 16 18 Si 0.94 41.04 29.55 68.60 2.03 43.07 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.19 -7.93 9.96 30.62 0.30 -7.62 16 23 C -0.16 -7.02 9.48 30.62 0.29 -6.73 16 24 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 25 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 28 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.10 1.88 8.08 -2.39 -0.02 1.86 16 32 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 33 H 0.15 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.42 15.13 8.34 -96.74 -0.81 14.32 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.16 7.64 -2.39 -0.02 2.15 16 38 H 0.26 13.23 8.32 -92.70 -0.77 12.46 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -64.48 384.46 0.20 -64.28 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.18 Total: 34.32 kcal Atomic # 6 Polarization: -63.40 SS G_CDS: 3.66 Total: -59.74 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -0.82 Total: -87.78 kcal Atomic # 8 Polarization: -71.11 SS G_CDS: -4.54 Total: -75.65 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 81.80 SS G_CDS: -0.31 Total: 81.50 kcal Total: -64.48 0.20 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337163692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.819 kcal (2) G-P(sol) polarization free energy of solvation -64.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds