Wall clock time and date at job start Tue Mar 31 2020 14:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38398 * 119.84448 * 2 1 4 4 C 1.37915 * 120.15924 * 179.97438 * 3 2 1 5 5 C 1.39706 * 119.83655 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.14834 * 180.02562 * 5 4 3 7 7 O 1.21549 * 120.00225 * 5.56306 * 6 5 4 8 8 C 1.47731 * 119.99489 * 185.29420 * 6 5 4 9 9 C 1.39394 * 120.21078 * 256.50991 * 8 6 5 10 10 C 1.38121 * 119.98299 * 179.72120 * 9 8 6 11 11 C 1.38466 * 120.44561 * 0.55719 * 10 9 8 12 12 C 1.38154 * 120.43609 * 359.71965 * 11 10 9 13 13 C 1.39334 * 119.99487 * 359.97438 * 12 11 10 14 14 C 1.47713 * 120.21304 * 180.02562 * 13 12 11 15 15 O 1.21601 * 120.00323 * 237.41202 * 14 13 12 16 16 N 1.34777 * 120.00301 * 57.40675 * 14 13 12 17 17 C 1.46500 * 119.99742 * 355.33825 * 16 14 13 18 18 C 1.36640 * 120.00381 * 175.32944 * 16 14 13 19 19 H 1.08000 * 119.99652 * 3.05715 * 18 16 14 20 20 C 1.39213 * 119.99997 * 183.05218 * 18 16 14 21 21 N 1.31248 * 120.00103 * 5.38031 * 20 18 16 22 22 Si 1.86804 * 119.99789 * 185.38177 * 20 18 16 23 23 H 1.48505 * 109.47197 * 89.99812 * 22 20 18 24 24 H 1.48502 * 109.46892 * 209.99754 * 22 20 18 25 25 H 1.48497 * 109.47427 * 329.99843 * 22 20 18 26 26 C 1.39699 * 119.69293 * 0.27765 * 5 4 3 27 27 C 1.37921 * 119.83946 * 359.40012 * 26 5 4 28 28 H 1.09005 * 109.46731 * 89.99769 * 1 2 3 29 29 H 1.08998 * 109.47284 * 210.00023 * 1 2 3 30 30 H 1.08996 * 109.46853 * 330.00604 * 1 2 3 31 31 H 1.08007 * 119.91912 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.07923 * 180.02562 * 4 3 2 33 33 H 1.07989 * 120.00734 * 359.97438 * 9 8 6 34 34 H 1.08008 * 119.78016 * 180.28240 * 10 9 8 35 35 H 1.07996 * 119.78275 * 179.74137 * 11 10 9 36 36 H 1.08005 * 120.00207 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47361 * 1.35069 * 17 16 14 38 38 H 1.09004 * 109.47650 * 121.34911 * 17 16 14 39 39 H 1.09000 * 109.47094 * 241.35346 * 17 16 14 40 40 H 0.97008 * 119.99986 * 180.02562 * 21 20 18 41 41 H 1.08002 * 120.07959 * 179.72296 * 26 5 4 42 42 H 1.08000 * 119.91966 * 180.34459 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2004 0.0000 4 6 3.5749 1.2080 0.0005 5 6 4.2766 0.0000 0.0005 6 6 5.7539 0.0000 0.0017 7 8 6.3615 1.0477 0.1047 8 6 6.4926 -1.2739 -0.1164 9 6 7.0858 -1.8474 1.0071 10 6 7.7704 -3.0415 0.8925 11 6 7.8829 -3.6706 -0.3359 12 6 7.3069 -3.1152 -1.4621 13 6 6.6066 -1.9144 -1.3661 14 6 5.9884 -1.3165 -2.5670 15 8 6.2902 -0.1893 -2.9092 16 7 5.0897 -2.0202 -3.2837 17 6 4.8017 -3.4130 -2.9324 18 6 4.4469 -1.4346 -4.3377 19 1 4.6948 -0.4241 -4.6274 20 6 3.4728 -2.1405 -5.0382 21 7 3.0963 -3.3273 -4.6230 22 14 2.7014 -1.3986 -6.5693 23 1 3.4920 -1.7933 -7.7628 24 1 1.3089 -1.8944 -6.7119 25 1 2.6901 0.0816 -6.4504 26 6 3.5748 -1.2079 -0.0059 27 6 2.1956 -1.2004 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6519 2.1336 -0.0004 32 1 4.1110 2.1456 0.0010 33 1 7.0066 -1.3603 1.9677 34 1 8.2249 -3.4853 1.7660 35 1 8.4242 -4.6019 -0.4141 36 1 7.3986 -3.6121 -2.4166 37 1 5.3872 -3.6956 -2.0574 38 1 3.7402 -3.5195 -2.7091 39 1 5.0637 -4.0604 -3.7693 40 1 2.4178 -3.8194 -5.1113 41 1 4.1110 -2.1455 -0.0104 42 1 1.6518 -2.1335 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337548358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:16 Heat of formation + Delta-G solvation = 1.520601 kcal Electronic energy + Delta-G solvation = -27581.524776 eV Core-core repulsion = 23878.379289 eV Total energy + Delta-G solvation = -3703.145487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23591 -38.95740 -37.94372 -37.31125 -34.78401 -32.77759 -31.92672 -31.24565 -30.62067 -30.49258 -27.40006 -26.43123 -24.96029 -23.88586 -22.67574 -22.35732 -21.66597 -20.02168 -19.05719 -17.22544 -16.94209 -16.43565 -16.05825 -15.32431 -15.12766 -14.99965 -14.69203 -14.28412 -14.00007 -13.78556 -13.74494 -13.64965 -13.45663 -13.23403 -13.14293 -12.73290 -12.33874 -12.14241 -11.88214 -11.75871 -11.64682 -11.44772 -11.38540 -11.08475 -11.01330 -10.82840 -10.76456 -10.42361 -10.26514 -9.43416 -9.16004 -8.71869 -8.68924 -8.67146 -8.43438 -8.34407 -7.95763 -6.32994 -3.86582 0.96804 1.32309 1.48561 1.69032 2.73194 3.09658 3.18956 3.25075 3.64064 3.95917 4.04554 4.12385 4.27775 4.73288 4.95783 5.02224 5.04914 5.09445 5.21260 5.22919 5.30969 5.40167 5.51435 5.64584 5.66857 5.67799 5.70845 5.85884 5.88621 6.02938 6.14254 6.20652 6.26551 6.33611 6.50208 6.57698 6.59878 6.66505 6.69134 6.75419 6.98988 7.05883 7.17331 7.33686 7.48865 7.83625 7.96408 8.40618 9.09455 9.33175 9.89021 10.57754 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.006849 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.249015 B = 4087.029617 C = 5948.724392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.054 4.054 5 C -0.159 4.159 6 C 0.456 3.544 7 O -0.441 6.441 8 C -0.117 4.117 9 C -0.093 4.093 10 C -0.123 4.123 11 C -0.111 4.111 12 C -0.099 4.099 13 C -0.050 4.050 14 C 0.456 3.544 15 O -0.584 6.584 16 N -0.423 5.423 17 C 0.099 3.901 18 C -0.295 4.295 19 H 0.106 0.894 20 C 0.030 3.970 21 N -0.878 5.878 22 Si 0.930 3.070 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.050 4.050 27 C -0.127 4.127 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -2.955 11.640 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.155 4.155 4 C -0.073 4.073 5 C -0.160 4.160 6 C 0.333 3.667 7 O -0.315 6.315 8 C -0.119 4.119 9 C -0.111 4.111 10 C -0.141 4.141 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.054 4.054 14 C 0.244 3.756 15 O -0.470 6.470 16 N -0.139 5.139 17 C -0.044 4.044 18 C -0.423 4.423 19 H 0.123 0.877 20 C -0.172 4.172 21 N -0.519 5.519 22 Si 0.756 3.244 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.193 1.193 26 C -0.068 4.068 27 C -0.145 4.145 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.819 -2.008 11.413 11.730 hybrid contribution -0.387 -0.087 -0.993 1.070 sum -2.206 -2.095 10.419 10.855 Atomic orbital electron populations 1.20842 0.91177 1.02546 1.02710 1.20120 0.96112 0.93242 0.96298 1.20913 0.93786 0.97600 1.03249 1.21266 0.94011 0.97568 0.94415 1.20294 0.94034 0.94546 1.07156 1.20412 0.88055 0.87714 0.70532 1.90561 1.71403 1.33758 1.35735 1.20231 1.01062 0.96770 0.93822 1.20959 0.97246 0.95842 0.97080 1.21043 0.99849 0.95480 0.97743 1.21184 0.99269 0.99950 0.92498 1.21334 0.96779 0.94398 0.99277 1.20245 0.97551 0.94054 0.93568 1.17738 0.85505 0.86988 0.85336 1.90678 1.65494 1.19577 1.71271 1.43533 1.33642 1.10838 1.25844 1.22109 1.02361 0.82192 0.97701 1.19831 1.16249 1.00567 1.05634 0.87654 1.25339 0.96664 0.95773 0.99463 1.70074 1.30578 1.12310 1.38906 0.85854 0.78045 0.79529 0.80958 1.20198 1.20738 1.19279 1.21312 0.94281 0.97191 0.94000 1.20936 0.93903 0.97679 1.02024 0.90700 0.91433 0.91596 0.85768 0.85220 0.85685 0.85675 0.85633 0.85075 0.95025 0.89437 0.92322 0.92189 0.85583 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.00 36.01 0.36 -0.93 16 2 C -0.06 -0.85 5.89 -104.51 -0.62 -1.46 16 3 C -0.14 -2.09 9.68 -39.64 -0.38 -2.48 16 4 C -0.05 -0.97 9.60 -39.15 -0.38 -1.34 16 5 C -0.16 -3.07 5.83 -104.93 -0.61 -3.68 16 6 C 0.46 9.51 5.22 -31.83 -0.17 9.34 16 7 O -0.44 -10.11 17.13 5.32 0.09 -10.02 16 8 C -0.12 -2.24 4.27 -104.58 -0.45 -2.69 16 9 C -0.09 -1.40 9.78 -39.19 -0.38 -1.78 16 10 C -0.12 -1.56 10.03 -39.54 -0.40 -1.96 16 11 C -0.11 -1.48 10.03 -39.53 -0.40 -1.88 16 12 C -0.10 -1.68 7.42 -39.20 -0.29 -1.97 16 13 C -0.05 -1.04 4.77 -104.61 -0.50 -1.54 16 14 C 0.46 11.57 6.43 -12.39 -0.08 11.49 16 15 O -0.58 -17.26 16.06 5.28 0.08 -17.17 16 16 N -0.42 -10.74 3.01 -123.34 -0.37 -11.11 16 17 C 0.10 2.19 8.23 59.85 0.49 2.68 16 18 C -0.29 -8.12 9.57 -15.05 -0.14 -8.26 16 19 H 0.11 3.11 7.16 -52.49 -0.38 2.73 16 20 C 0.03 0.78 5.44 -17.44 -0.09 0.68 16 21 N -0.88 -21.98 9.48 55.51 0.53 -21.46 16 22 Si 0.93 20.47 29.56 -169.99 -5.02 15.44 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.05 -0.87 9.46 -39.15 -0.37 -1.24 16 27 C -0.13 -2.01 9.68 -39.64 -0.38 -2.39 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.13 2.24 7.66 -52.48 -0.40 1.83 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 2.16 7.55 -52.48 -0.40 1.76 16 37 H 0.03 0.60 4.51 -51.93 -0.23 0.36 16 38 H 0.09 2.04 6.56 -51.93 -0.34 1.70 16 39 H 0.06 1.34 7.49 -51.93 -0.39 0.95 16 40 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 41 H 0.13 2.14 7.10 -52.49 -0.37 1.77 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -32.96 358.84 -9.09 -42.05 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.02 Total: 6.26 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.79 Total: -9.41 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.15 Total: -32.57 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.18 Total: -27.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.96 -9.09 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337548358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.574 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds