Wall clock time and date at job start Tue Mar 31 2020 14:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38398 * 119.84448 * 2 1 4 4 C 1.37915 * 120.15924 * 179.97438 * 3 2 1 5 5 C 1.39706 * 119.83655 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.14834 * 180.02562 * 5 4 3 7 7 O 1.21549 * 120.00225 * 5.56306 * 6 5 4 8 8 C 1.47731 * 119.99489 * 185.29420 * 6 5 4 9 9 C 1.39394 * 120.21078 * 256.50991 * 8 6 5 10 10 C 1.38121 * 119.98299 * 179.72120 * 9 8 6 11 11 C 1.38466 * 120.44561 * 0.55719 * 10 9 8 12 12 C 1.38154 * 120.43609 * 359.71965 * 11 10 9 13 13 C 1.39334 * 119.99487 * 359.97438 * 12 11 10 14 14 C 1.47713 * 120.21304 * 180.02562 * 13 12 11 15 15 O 1.21601 * 120.00323 * 237.41202 * 14 13 12 16 16 N 1.34777 * 120.00301 * 57.40675 * 14 13 12 17 17 C 1.46500 * 119.99742 * 355.33825 * 16 14 13 18 18 C 1.36640 * 120.00381 * 175.32944 * 16 14 13 19 19 H 1.08000 * 119.99652 * 3.05715 * 18 16 14 20 20 C 1.39213 * 119.99997 * 183.05218 * 18 16 14 21 21 N 1.31248 * 120.00103 * 5.38031 * 20 18 16 22 22 Si 1.86804 * 119.99789 * 185.38177 * 20 18 16 23 23 H 1.48505 * 109.47197 * 89.99812 * 22 20 18 24 24 H 1.48502 * 109.46892 * 209.99754 * 22 20 18 25 25 H 1.48497 * 109.47427 * 329.99843 * 22 20 18 26 26 C 1.39699 * 119.69293 * 0.27765 * 5 4 3 27 27 C 1.37921 * 119.83946 * 359.40012 * 26 5 4 28 28 H 1.09005 * 109.46731 * 89.99769 * 1 2 3 29 29 H 1.08998 * 109.47284 * 210.00023 * 1 2 3 30 30 H 1.08996 * 109.46853 * 330.00604 * 1 2 3 31 31 H 1.08007 * 119.91912 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.07923 * 180.02562 * 4 3 2 33 33 H 1.07989 * 120.00734 * 359.97438 * 9 8 6 34 34 H 1.08008 * 119.78016 * 180.28240 * 10 9 8 35 35 H 1.07996 * 119.78275 * 179.74137 * 11 10 9 36 36 H 1.08005 * 120.00207 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47361 * 1.35069 * 17 16 14 38 38 H 1.09004 * 109.47650 * 121.34911 * 17 16 14 39 39 H 1.09000 * 109.47094 * 241.35346 * 17 16 14 40 40 H 0.97008 * 119.99986 * 180.02562 * 21 20 18 41 41 H 1.08002 * 120.07959 * 179.72296 * 26 5 4 42 42 H 1.08000 * 119.91966 * 180.34459 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2004 0.0000 4 6 3.5749 1.2080 0.0005 5 6 4.2766 0.0000 0.0005 6 6 5.7539 0.0000 0.0017 7 8 6.3615 1.0477 0.1047 8 6 6.4926 -1.2739 -0.1164 9 6 7.0858 -1.8474 1.0071 10 6 7.7704 -3.0415 0.8925 11 6 7.8829 -3.6706 -0.3359 12 6 7.3069 -3.1152 -1.4621 13 6 6.6066 -1.9144 -1.3661 14 6 5.9884 -1.3165 -2.5670 15 8 6.2902 -0.1893 -2.9092 16 7 5.0897 -2.0202 -3.2837 17 6 4.8017 -3.4130 -2.9324 18 6 4.4469 -1.4346 -4.3377 19 1 4.6948 -0.4241 -4.6274 20 6 3.4728 -2.1405 -5.0382 21 7 3.0963 -3.3273 -4.6230 22 14 2.7014 -1.3986 -6.5693 23 1 3.4920 -1.7933 -7.7628 24 1 1.3089 -1.8944 -6.7119 25 1 2.6901 0.0816 -6.4504 26 6 3.5748 -1.2079 -0.0059 27 6 2.1956 -1.2004 0.0003 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6519 2.1336 -0.0004 32 1 4.1110 2.1456 0.0010 33 1 7.0066 -1.3603 1.9677 34 1 8.2249 -3.4853 1.7660 35 1 8.4242 -4.6019 -0.4141 36 1 7.3986 -3.6121 -2.4166 37 1 5.3872 -3.6956 -2.0574 38 1 3.7402 -3.5195 -2.7091 39 1 5.0637 -4.0604 -3.7693 40 1 2.4178 -3.8194 -5.1113 41 1 4.1110 -2.1455 -0.0104 42 1 1.6518 -2.1335 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337548358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:15 Heat of formation + Delta-G solvation = -16.941143 kcal Electronic energy + Delta-G solvation = -27582.325337 eV Core-core repulsion = 23878.379289 eV Total energy + Delta-G solvation = -3703.946048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72064 -40.47135 -39.48520 -38.80369 -36.79939 -34.02549 -33.82061 -32.51333 -32.07663 -31.78129 -28.59307 -28.28078 -26.74673 -25.27090 -24.12440 -23.64417 -22.94594 -21.55996 -20.54464 -19.09747 -18.50057 -18.07618 -17.51186 -16.88269 -16.70842 -16.29932 -16.10120 -16.02877 -15.52332 -15.41175 -15.08885 -14.88320 -14.85453 -14.51743 -14.45649 -14.38569 -13.90834 -13.54693 -13.44877 -13.05985 -12.90642 -12.87372 -12.83699 -12.68540 -12.58949 -12.33420 -12.21533 -12.16190 -12.00463 -11.11859 -10.95524 -10.54331 -9.99374 -9.96735 -9.93385 -9.80607 -9.71043 -8.29263 -5.94290 -0.42025 0.01734 0.23949 0.39176 1.29271 1.32232 1.36716 1.47861 1.92345 2.20775 2.63187 2.73106 2.89118 3.00554 3.09086 3.73265 3.85298 3.89110 3.92631 3.96097 4.05071 4.17589 4.35623 4.40622 4.43149 4.45980 4.61804 4.72274 4.75244 4.76480 4.83304 4.94527 5.02754 5.12977 5.19100 5.29569 5.30374 5.35698 5.37664 5.38777 5.42866 5.50121 5.53655 5.89051 5.93370 5.97332 6.31200 6.42406 7.09134 7.37512 7.94286 8.58710 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.006849 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.249015 B = 4087.029617 C = 5948.724392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.138 4.138 4 C -0.077 4.077 5 C -0.192 4.192 6 C 0.448 3.552 7 O -0.484 6.484 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.096 4.096 11 C -0.092 4.092 12 C -0.108 4.108 13 C -0.085 4.085 14 C 0.452 3.548 15 O -0.644 6.644 16 N -0.430 5.430 17 C 0.114 3.886 18 C -0.342 4.342 19 H 0.068 0.932 20 C 0.009 3.991 21 N -0.879 5.879 22 Si 0.985 3.015 23 H -0.269 1.269 24 H -0.260 1.260 25 H -0.282 1.282 26 C -0.057 4.057 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.276 0.724 41 H 0.127 0.873 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -5.882 13.326 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.156 4.156 4 C -0.095 4.095 5 C -0.193 4.193 6 C 0.328 3.672 7 O -0.362 6.362 8 C -0.140 4.140 9 C -0.111 4.111 10 C -0.114 4.114 11 C -0.109 4.109 12 C -0.126 4.126 13 C -0.088 4.088 14 C 0.242 3.758 15 O -0.535 6.535 16 N -0.145 5.145 17 C -0.028 4.028 18 C -0.470 4.470 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.517 5.517 22 Si 0.809 3.191 23 H -0.194 1.194 24 H -0.185 1.185 25 H -0.207 1.207 26 C -0.075 4.075 27 C -0.154 4.154 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.138 0.862 33 H 0.165 0.835 34 H 0.195 0.805 35 H 0.191 0.809 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.831 -5.011 13.114 14.322 hybrid contribution -0.073 0.765 -1.433 1.626 sum -2.904 -4.245 11.681 12.763 Atomic orbital electron populations 1.20929 0.88007 1.04727 1.03311 1.20625 0.98361 0.92437 0.93945 1.21283 0.92741 0.99455 1.02111 1.21441 0.95523 0.97012 0.95562 1.20429 0.93627 0.95819 1.09410 1.20995 0.89123 0.88136 0.68921 1.90509 1.72249 1.35144 1.38292 1.20277 1.02491 0.96373 0.94829 1.21339 0.96436 0.96757 0.96519 1.21646 0.96997 0.93523 0.99242 1.21678 0.97326 1.00875 0.91047 1.21448 0.97011 0.93184 1.01006 1.19889 1.00567 0.96425 0.91937 1.18510 0.84776 0.86278 0.86253 1.90609 1.67336 1.22318 1.73207 1.43664 1.33310 1.11925 1.25570 1.21987 1.02053 0.80297 0.98462 1.19631 1.18861 1.00033 1.08436 0.91427 1.25954 0.96084 0.96125 1.01224 1.70136 1.30133 1.12260 1.39201 0.85061 0.78218 0.78013 0.77828 1.19435 1.18456 1.20706 1.21403 0.95268 0.96544 0.94285 1.21316 0.93305 0.99302 1.01476 0.90584 0.89504 0.89331 0.82773 0.86182 0.83535 0.80487 0.80950 0.85127 0.91782 0.90692 0.93358 0.91314 0.85508 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.00 71.24 0.71 -1.48 16 2 C -0.05 -1.51 5.89 -19.79 -0.12 -1.63 16 3 C -0.14 -4.21 9.68 22.23 0.22 -4.00 16 4 C -0.08 -2.93 9.60 22.55 0.22 -2.71 16 5 C -0.19 -7.87 5.83 -20.06 -0.12 -7.98 16 6 C 0.45 19.99 5.22 27.29 0.14 20.13 16 7 O -0.48 -24.19 17.13 -3.87 -0.07 -24.25 16 8 C -0.14 -5.40 4.27 -19.84 -0.08 -5.48 16 9 C -0.09 -2.59 9.78 22.52 0.22 -2.37 16 10 C -0.10 -1.97 10.03 22.30 0.22 -1.75 16 11 C -0.09 -2.03 10.03 22.30 0.22 -1.81 16 12 C -0.11 -3.51 7.42 22.51 0.17 -3.34 16 13 C -0.08 -3.59 4.77 -19.86 -0.09 -3.69 16 14 C 0.45 24.40 6.43 86.75 0.56 24.95 16 15 O -0.64 -41.45 16.06 -4.03 -0.06 -41.52 16 16 N -0.43 -22.95 3.01 -662.38 -2.00 -24.95 16 17 C 0.11 5.11 8.23 127.77 1.05 6.16 16 18 C -0.34 -19.91 9.57 84.18 0.81 -19.10 16 19 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 20 C 0.01 0.47 5.44 85.01 0.46 0.94 16 21 N -0.88 -43.79 9.48 21.71 0.21 -43.58 16 22 Si 0.99 42.33 29.56 68.60 2.03 44.36 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 C -0.06 -2.06 9.46 22.55 0.21 -1.84 16 27 C -0.14 -4.21 9.68 22.23 0.22 -4.00 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 30 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.12 4.61 7.66 -2.91 -0.02 4.58 16 33 H 0.15 3.41 8.06 -2.92 -0.02 3.39 16 34 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.13 4.19 7.55 -2.91 -0.02 4.17 16 37 H 0.06 2.41 4.51 -2.38 -0.01 2.40 16 38 H 0.07 3.51 6.56 -2.38 -0.02 3.50 16 39 H 0.05 2.22 7.49 -2.39 -0.02 2.20 16 40 H 0.28 12.75 8.31 -92.70 -0.77 11.98 16 41 H 0.13 4.42 7.10 -2.91 -0.02 4.40 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -80.44 358.84 6.17 -74.27 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.05 Total: 24.66 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.01 Total: -8.99 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.79 Total: -68.53 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -0.13 Total: -65.77 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -80.44 6.17 -74.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337548358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.332 kcal (2) G-P(sol) polarization free energy of solvation -80.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds