Wall clock time and date at job start Tue Mar 31 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38239 * 119.99722 * 2 1 4 4 C 1.38242 * 119.99608 * 180.29057 * 3 2 1 5 5 C 1.38230 * 120.00260 * 359.71394 * 4 3 2 6 6 C 1.38240 * 119.99966 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99946 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00011 * 0.02562 * 6 5 4 9 9 C 1.50697 * 120.00140 * 179.97438 * 8 6 5 10 10 S 1.81395 * 109.46997 * 90.00350 * 9 8 6 11 11 O 1.42104 * 110.54652 * 68.37701 * 10 9 8 12 12 O 1.42104 * 110.54626 * 291.62415 * 10 9 8 13 13 N 1.65595 * 104.45317 * 180.02562 * 10 9 8 14 14 C 1.46505 * 119.99977 * 64.99385 * 13 10 9 15 15 C 1.53002 * 109.46901 * 159.13983 * 14 13 10 16 16 C 1.50703 * 115.55188 * 294.33082 * 15 14 13 17 17 H 1.08006 * 119.99748 * 95.26870 * 16 15 14 18 18 C 1.37880 * 120.00217 * 274.99662 * 16 15 14 19 19 N 1.31513 * 119.99735 * 355.55841 * 18 16 15 20 20 Si 1.86800 * 119.99867 * 175.55535 * 18 16 15 21 21 H 1.48501 * 109.47033 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46723 * 119.99816 * 20 18 16 23 23 H 1.48495 * 109.46936 * 239.99871 * 20 18 16 24 24 C 1.53000 * 117.49957 * 80.00538 * 15 14 13 25 25 C 1.52998 * 117.49824 * 148.66641 * 15 14 13 26 26 H 1.09006 * 109.47122 * 270.24895 * 1 2 3 27 27 H 1.08999 * 109.47351 * 30.25473 * 1 2 3 28 28 H 1.09002 * 109.47303 * 150.25410 * 1 2 3 29 29 H 1.07998 * 120.00495 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99827 * 179.72535 * 4 3 2 31 31 H 1.08001 * 120.00104 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47305 * 270.02415 * 7 6 5 33 33 H 1.09003 * 109.47270 * 30.02383 * 7 6 5 34 34 H 1.09006 * 109.47430 * 150.02261 * 7 6 5 35 35 H 1.09004 * 109.46992 * 330.00404 * 9 8 6 36 36 H 1.09000 * 109.47415 * 210.00572 * 9 8 6 37 37 H 0.97006 * 120.00489 * 245.00382 * 13 10 9 38 38 H 1.08999 * 109.46879 * 39.14621 * 14 13 10 39 39 H 1.08996 * 109.47680 * 279.13935 * 14 13 10 40 40 H 0.97007 * 119.99528 * 185.00583 * 19 18 16 41 41 H 1.09001 * 117.49774 * 215.00127 * 24 15 14 42 42 H 1.08993 * 117.49727 * 0.02562 * 24 15 14 43 43 H 1.09004 * 117.50046 * 359.97438 * 25 15 14 44 44 H 1.09003 * 117.50238 * 144.97193 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0061 5 6 4.2717 0.0001 -0.0062 6 6 3.5805 -1.1971 -0.0007 7 6 4.3340 -2.5021 -0.0014 8 6 2.1982 -1.1971 0.0043 9 6 1.4447 -2.5022 0.0096 10 16 1.1485 -3.0223 1.7220 11 8 0.2275 -2.1461 2.3571 12 8 2.3701 -3.3831 2.3520 13 7 0.3238 -4.4516 1.5830 14 6 0.9767 -5.6188 0.9849 15 6 0.2513 -6.8913 1.4273 16 6 0.3333 -7.2082 2.8983 17 1 -0.4600 -6.8983 3.5625 18 6 1.4183 -7.8987 3.3954 19 7 2.3383 -8.3568 2.5748 20 14 1.5816 -8.1833 5.2343 21 1 0.4230 -7.5729 5.9345 22 1 1.6123 -9.6425 5.5085 23 1 2.8389 -7.5615 5.7217 24 6 -1.0423 -7.2573 0.6968 25 6 0.2320 -8.0691 0.4510 26 1 -0.3634 0.0045 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5099 29 1 1.6581 2.1325 0.0004 30 1 4.1204 2.1325 -0.0106 31 1 5.3517 0.0001 -0.0113 32 1 4.5116 -2.8186 -1.0292 33 1 5.2885 -2.3708 0.5084 34 1 3.7471 -3.2609 0.5162 35 1 2.0320 -3.2629 -0.5048 36 1 0.4905 -2.3730 -0.5011 37 1 -0.5916 -4.5160 1.8975 38 1 2.0158 -5.6609 1.3113 39 1 0.9400 -5.5388 -0.1015 40 1 3.0630 -8.9042 2.9156 41 1 -1.8340 -7.7272 1.2803 42 1 -1.3763 -6.5918 -0.0991 43 1 0.7356 -7.9374 -0.5067 44 1 0.2789 -9.0732 0.8726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338978441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:48 Heat of formation + Delta-G solvation = -34.049616 kcal Electronic energy + Delta-G solvation = -25915.394870 eV Core-core repulsion = 22346.150894 eV Total energy + Delta-G solvation = -3569.243976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90302 -37.11298 -36.64692 -35.49996 -33.68037 -33.62056 -33.30638 -31.89277 -28.79919 -26.74137 -26.53221 -25.97640 -24.86185 -21.31940 -21.11956 -20.82689 -19.38209 -18.79940 -17.28666 -16.65118 -16.53368 -16.17908 -15.74806 -15.23581 -14.70998 -14.58822 -14.23381 -13.93137 -13.50593 -13.30695 -13.25470 -13.16437 -13.04695 -12.84181 -12.73946 -12.24340 -12.03056 -11.85263 -11.71187 -11.57734 -11.49826 -11.25829 -11.06063 -11.05170 -10.93319 -10.91638 -10.84006 -10.47383 -10.23293 -9.53252 -9.19595 -8.77057 -8.65260 -8.51448 -8.43366 -8.15406 -6.03037 -4.09990 0.45860 1.24522 1.30514 3.22077 3.31849 3.41749 3.44357 3.57617 4.08512 4.32269 4.42615 4.45876 4.71977 4.75276 4.85266 5.03136 5.16886 5.25119 5.27359 5.31975 5.38666 5.49063 5.54470 5.65312 5.68255 5.78852 5.83914 5.85153 6.10179 6.19722 6.22000 6.22869 6.31879 6.33451 6.40222 6.46592 6.50441 6.68044 6.87409 6.99142 7.06714 7.37383 7.55275 7.68365 7.88557 8.38725 8.90561 9.56829 11.04754 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.003900 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.311994 B = 7178.404027 C = 7508.495212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.133 4.133 8 C -0.090 4.090 9 C -0.599 4.599 10 S 2.606 3.394 11 O -0.965 6.965 12 O -0.942 6.942 13 N -1.097 6.097 14 C 0.155 3.845 15 C 0.034 3.966 16 C -0.492 4.492 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.878 5.878 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.281 1.281 24 C -0.212 4.212 25 C -0.145 4.145 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.415 0.585 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 15.255 -9.458 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.126 4.126 5 C -0.146 4.146 6 C -0.062 4.062 7 C -0.189 4.189 8 C -0.092 4.092 9 C -0.724 4.724 10 S 2.697 3.303 11 O -0.955 6.955 12 O -0.932 6.932 13 N -0.857 5.857 14 C 0.029 3.971 15 C 0.032 3.968 16 C -0.530 4.530 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.514 5.514 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.249 4.249 25 C -0.183 4.183 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.009 15.615 -8.724 17.915 hybrid contribution -0.210 -0.431 0.252 0.541 sum 0.799 15.184 -8.473 17.407 Atomic orbital electron populations 1.21061 0.90804 1.02817 1.04101 1.19831 0.96411 0.92368 0.98008 1.20980 0.94269 0.97258 1.02222 1.21175 0.94290 0.98022 0.99077 1.21023 0.99982 0.91668 1.01908 1.19895 0.92652 0.96260 0.97410 1.21058 1.00966 0.94306 1.02603 1.18706 0.92855 0.91922 1.05717 1.29857 1.09656 1.04286 1.28650 1.05207 0.74836 0.73608 0.76686 1.93536 1.63285 1.66177 1.72489 1.93605 1.46980 1.81755 1.70871 1.55237 1.27785 1.25051 1.77622 1.21013 0.97938 0.85262 0.92922 1.18931 0.93361 0.90709 0.93787 1.20386 1.05281 1.36933 0.90395 0.92157 1.24948 0.95258 0.95236 0.97609 1.69972 1.13295 1.33846 1.34335 0.86605 0.78432 0.77616 0.85828 1.19660 1.21087 1.20716 1.23031 0.92836 1.05557 1.03526 1.22502 0.98782 0.98095 0.98965 0.89057 0.91159 0.91298 0.85689 0.85795 0.85599 0.90673 0.90661 0.90019 0.84106 0.84076 0.74982 0.89937 0.94958 0.92994 0.90336 0.91683 0.91879 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.50 36.00 0.34 -1.09 16 2 C -0.07 -0.82 5.88 -104.63 -0.62 -1.44 16 3 C -0.13 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.13 -1.47 9.70 -39.58 -0.38 -1.86 16 6 C -0.06 -0.82 5.88 -104.62 -0.62 -1.43 16 7 C -0.13 -1.70 9.19 36.00 0.33 -1.37 16 8 C -0.09 -1.24 5.14 -104.62 -0.54 -1.78 16 9 C -0.60 -7.93 5.06 36.00 0.18 -7.75 16 10 S 2.61 45.56 5.42 -107.50 -0.58 44.98 16 11 O -0.96 -18.18 17.47 -57.54 -1.01 -19.18 16 12 O -0.94 -20.02 15.78 -57.54 -0.91 -20.93 16 13 N -1.10 -19.97 5.77 -10.61 -0.06 -20.03 16 14 C 0.15 3.13 6.00 -4.04 -0.02 3.11 16 15 C 0.03 0.78 1.49 -155.66 -0.23 0.55 16 16 C -0.49 -12.99 8.75 -34.44 -0.30 -13.30 16 17 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 18 C 0.07 1.98 5.43 -17.82 -0.10 1.89 16 19 N -0.88 -24.29 12.65 55.43 0.70 -23.59 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.21 -4.24 9.96 -26.69 -0.27 -4.50 16 25 C -0.14 -3.17 9.14 -26.69 -0.24 -3.41 16 26 H 0.09 1.09 7.63 -51.93 -0.40 0.70 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.68 5.94 -51.93 -0.31 0.38 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.08 1.20 4.95 -51.93 -0.26 0.94 16 35 H 0.14 1.67 6.70 -51.92 -0.35 1.32 16 36 H 0.14 1.50 5.94 -51.92 -0.31 1.19 16 37 H 0.42 7.23 8.66 -34.47 -0.30 6.94 16 38 H 0.08 1.88 7.59 -51.93 -0.39 1.49 16 39 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -32.27 371.53 -11.02 -43.28 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.50 Total: 9.15 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: -3.24 Total: -35.72 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.64 Total: -43.62 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.91 Total: -40.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.58 Total: 44.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.27 -11.02 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338978441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.235 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds